RNA–Protein interactions for RNA: ENST00000583441.1

SMCHD1-209, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 5

Gene SMCHD1, Length 657 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-209ENST00000583441 CLCN1P35523 988 aa9.6□□□□□ -0.87
SMCHD1-209ENST00000583441 LCE3BQ5TA77 95 aa9.6□□□□□ -0.87
SMCHD1-209ENST00000583441 LYPD8Q6UX82 237 aa9.6□□□□□ -0.87
SMCHD1-209ENST00000583441 NDUFV2P19404 249 aa9.58□□□□□ -0.88
SMCHD1-209ENST00000583441 GAS6Q14393 721 aa9.57□□□□□ -0.88
SMCHD1-209ENST00000583441 KRI1Q8N9T8 703 aaKnown RBP9.57□□□□□ -0.88
SMCHD1-209ENST00000583441 PGPEP1Q9NXJ5 209 aa9.57□□□□□ -0.88
SMCHD1-209ENST00000583441 MAP10Q9P2G4 905 aa9.57□□□□□ -0.88
SMCHD1-209ENST00000583441 MAP4K5Q9Y4K4 846 aa9.57□□□□□ -0.88
SMCHD1-209ENST00000583441 BCRP11274 1271 aa9.56□□□□□ -0.88
SMCHD1-209ENST00000583441 CBLBQ13191 982 aa9.56□□□□□ -0.88
SMCHD1-209ENST00000583441 Q6ZVU0 165 aa9.55□□□□□ -0.88
SMCHD1-209ENST00000583441 CTSOP43234 321 aaPredicted RBP9.54□□□□□ -0.88
SMCHD1-209ENST00000583441 SPIRE2Q8WWL2 714 aa9.54□□□□□ -0.88
SMCHD1-209ENST00000583441 MBIPQ9NS73 344 aa9.54□□□□□ -0.88
SMCHD1-209ENST00000583441 MOXD2PA6NHM9 499 aa9.53□□□□□ -0.88
SMCHD1-209ENST00000583441 MINK1Q8N4C8 1332 aaPredicted RBP9.53□□□□□ -0.88
SMCHD1-209ENST00000583441 SENP3-EIF4A1A0A087X0R7 540 aa9.52□□□□□ -0.89
SMCHD1-209ENST00000583441 F12P00748 615 aaPredicted RBP9.52□□□□□ -0.89
SMCHD1-209ENST00000583441 PPP1R26Q5T8A7 1209 aaPredicted RBP9.52□□□□□ -0.89
SMCHD1-209ENST00000583441 C1QTNF2Q9BXJ5 285 aa9.52□□□□□ -0.89
SMCHD1-209ENST00000583441 POLMQ9NP87 494 aaPredicted RBP9.52□□□□□ -0.89
SMCHD1-209ENST00000583441 IGF1RP08069 1367 aa9.51□□□□□ -0.89
SMCHD1-209ENST00000583441 KRBA1A5PL33 1030 aa9.51□□□□□ -0.89
SMCHD1-209ENST00000583441 INSM2Q96T92 566 aaPredicted RBP9.51□□□□□ -0.89
SMCHD1-209ENST00000583441 BTBD11A6QL63 1104 aa9.49□□□□□ -0.89
SMCHD1-209ENST00000583441 TRMT44Q8IYL2 757 aaKnown RBP9.49□□□□□ -0.89
SMCHD1-209ENST00000583441 ARMC2Q8NEN0 867 aa9.49□□□□□ -0.89
SMCHD1-209ENST00000583441 RELBQ01201 579 aa9.48□□□□□ -0.89
SMCHD1-209ENST00000583441 FOXR1Q6PIV2 292 aa9.48□□□□□ -0.89
SMCHD1-209ENST00000583441 AGBL1Q96MI9 1066 aa9.48□□□□□ -0.89
SMCHD1-209ENST00000583441 KRTAP4-12Q9BQ66 201 aa9.48□□□□□ -0.89
SMCHD1-209ENST00000583441 CUEDC1Q9NWM3 386 aaPredicted RBP9.48□□□□□ -0.89
SMCHD1-209ENST00000583441 MAGEB6P1A0A0J9YX57 407 aa9.47□□□□□ -0.89
SMCHD1-209ENST00000583441 ALYREFQ86V81 257 aaKnown RBP9.47□□□□□ -0.89
SMCHD1-209ENST00000583441 RNF217Q8TC41 542 aa9.47□□□□□ -0.89
SMCHD1-209ENST00000583441 CCDC102AQ96A19 550 aa9.47□□□□□ -0.89
SMCHD1-209ENST00000583441 ACDQ96AP0 544 aa9.46□□□□□ -0.9
SMCHD1-209ENST00000583441 CFAP99D6REC4 459 aa9.45□□□□□ -0.9
SMCHD1-209ENST00000583441 SSTR3P32745 418 aaPredicted RBP9.45□□□□□ -0.9
SMCHD1-209ENST00000583441 NBPF14Q5TI25 921 aa9.44□□□□□ -0.9
SMCHD1-209ENST00000583441 LRRC4BQ9NT99 713 aa9.44□□□□□ -0.9
SMCHD1-209ENST00000583441 GPR25O00155 361 aa9.43□□□□□ -0.9
SMCHD1-209ENST00000583441 GMCL1Q96IK5 515 aa9.43□□□□□ -0.9
SMCHD1-209ENST00000583441 ZNF395Q9H8N7 513 aaPredicted RBP9.43□□□□□ -0.9
SMCHD1-209ENST00000583441 ZMYM1Q5SVZ6 1142 aa9.42□□□□□ -0.9
SMCHD1-209ENST00000583441 CARD14Q9BXL6 1004 aa9.42□□□□□ -0.9
SMCHD1-209ENST00000583441 MKL2Q9ULH7 1088 aa9.42□□□□□ -0.9
SMCHD1-209ENST00000583441 SNRPNP63162 240 aaKnown RBP9.41□□□□□ -0.9
SMCHD1-209ENST00000583441 DHX9Q08211 1270 aaKnown RBP9.41□□□□□ -0.9
SMCHD1-209ENST00000583441 SH3BP5LQ7L8J4 393 aa9.41□□□□□ -0.9
SMCHD1-209ENST00000583441 ZNF837Q96EG3 531 aaPredicted RBP9.41□□□□□ -0.9
SMCHD1-209ENST00000583441 OIP5O43482 229 aa9.4□□□□□ -0.9
SMCHD1-209ENST00000583441 PRPF38BQ5VTL8 546 aaKnown RBP9.4□□□□□ -0.9
SMCHD1-209ENST00000583441 LYSMD3Q7Z3D4 306 aa9.4□□□□□ -0.9
SMCHD1-209ENST00000583441 TRIM22Q8IYM9 498 aa9.4□□□□□ -0.9
SMCHD1-209ENST00000583441 NSFL1CQ9UNZ2 370 aaKnown RBP9.4□□□□□ -0.9
SMCHD1-209ENST00000583441 KRTAP9-9Q9BYP9 154 aa9.39□□□□□ -0.91
SMCHD1-209ENST00000583441 KRTAP9-4Q9BYQ2 154 aa9.39□□□□□ -0.91
SMCHD1-209ENST00000583441 GJA5P36382 358 aa9.38□□□□□ -0.91
SMCHD1-209ENST00000583441 TRERF1Q96PN7 1200 aa9.38□□□□□ -0.91
SMCHD1-209ENST00000583441 SEMA6BQ9H3T3 888 aa9.38□□□□□ -0.91
SMCHD1-209ENST00000583441 ZBTB3Q9H5J0 574 aa9.38□□□□□ -0.91
SMCHD1-209ENST00000583441 PER1O15534 1290 aaPredicted RBP9.37□□□□□ -0.91
SMCHD1-209ENST00000583441 HRCP23327 699 aa9.37□□□□□ -0.91
SMCHD1-209ENST00000583441 COL8A1P27658 744 aa9.37□□□□□ -0.91
SMCHD1-209ENST00000583441 ERFEQ4G0M1 354 aa9.37□□□□□ -0.91
SMCHD1-209ENST00000583441 KCTD15Q96SI1 283 aaPredicted RBP9.37□□□□□ -0.91
SMCHD1-209ENST00000583441 PCDHB15Q9Y5E8 787 aa9.37□□□□□ -0.91
SMCHD1-209ENST00000583441 MX2P20592 715 aa9.36□□□□□ -0.91
SMCHD1-209ENST00000583441 GRIN2CQ14957 1233 aa9.36□□□□□ -0.91
SMCHD1-209ENST00000583441 FOXD4L5Q5VV16 416 aaPredicted RBP9.36□□□□□ -0.91
SMCHD1-209ENST00000583441 RIPOR1Q6ZS17 1223 aa9.36□□□□□ -0.91
SMCHD1-209ENST00000583441 TSC1Q92574 1164 aa9.36□□□□□ -0.91
SMCHD1-209ENST00000583441 RRAGCQ9HB90 399 aa9.36□□□□□ -0.91
SMCHD1-209ENST00000583441 SLC24A1O60721 1099 aa9.35□□□□□ -0.91
SMCHD1-209ENST00000583441 RSBN1LQ6PCB5 846 aaPredicted RBP9.35□□□□□ -0.91
SMCHD1-209ENST00000583441 SCO2A0A1W2PP80 73 aa9.34□□□□□ -0.91
SMCHD1-209ENST00000583441 ITGB7P26010 798 aa9.34□□□□□ -0.91
SMCHD1-209ENST00000583441 DBN1Q16643 649 aa9.34□□□□□ -0.91
SMCHD1-209ENST00000583441 GTPBP3Q969Y2 492 aaKnown RBP9.34□□□□□ -0.91
SMCHD1-209ENST00000583441 CDV3Q9UKY7 258 aaKnown RBP9.34□□□□□ -0.91
SMCHD1-209ENST00000583441 C1QTNF9BB2RNN3 333 aa9.33□□□□□ -0.92
SMCHD1-209ENST00000583441 H7C1W4 665 aa9.33□□□□□ -0.92
SMCHD1-209ENST00000583441 RHOQP17081 205 aa9.33□□□□□ -0.92
SMCHD1-209ENST00000583441 PRICKLE2Q7Z3G6 844 aa9.33□□□□□ -0.92
SMCHD1-209ENST00000583441 DIXDC1Q155Q3 683 aa9.32□□□□□ -0.92
SMCHD1-209ENST00000583441 SLC10A4Q96EP9 437 aa9.32□□□□□ -0.92
SMCHD1-209ENST00000583441 OXCT2Q9BYC2 517 aaPredicted RBP9.32□□□□□ -0.92
SMCHD1-209ENST00000583441 KRTAP4-8A0A0G2JLE6 195 aa9.31□□□□□ -0.92
SMCHD1-209ENST00000583441 GPKOWQ92917 476 aaPredicted RBP eCLIP9.31□□□□□ -0.924e-6■■■□□ 17.1
SMCHD1-209ENST00000583441 TBC1D2Q9BYX2 928 aa9.31□□□□□ -0.92
SMCHD1-209ENST00000583441 ADH1AP07327 375 aa9.3□□□□□ -0.92
SMCHD1-209ENST00000583441 PTGIRP43119 386 aa9.3□□□□□ -0.92
SMCHD1-209ENST00000583441 SHISA8B8ZZ34 492 aa9.29□□□□□ -0.92
SMCHD1-209ENST00000583441 MAP2K3P46734 347 aa9.29□□□□□ -0.92
SMCHD1-209ENST00000583441 INTS6LQ5JSJ4 861 aaKnown RBP9.29□□□□□ -0.92
SMCHD1-209ENST00000583441 CD163Q86VB7 1156 aa9.29□□□□□ -0.92
SMCHD1-209ENST00000583441 CABLES1Q8TDN4 633 aa9.29□□□□□ -0.92
SMCHD1-209ENST00000583441 BEGAINQ9BUH8 593 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms