RNA–Protein interactions for RNA: ENST00000583363.5

CDK5RAP3-228, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 4

Gene CDK5RAP3, Length 558 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-228ENST00000583363 USP54Q70EL1 1684 aa22.06■■□□□ 1.12
CDK5RAP3-228ENST00000583363 GCP02774 474 aa22.05■■□□□ 1.12
CDK5RAP3-228ENST00000583363 ABCA3Q99758 1704 aa22.03■■□□□ 1.12
CDK5RAP3-228ENST00000583363 SOX12O15370 315 aa22.03■■□□□ 1.12
CDK5RAP3-228ENST00000583363 RRS1Q15050 365 aaKnown RBP22.03■■□□□ 1.12
CDK5RAP3-228ENST00000583363 CABLES1Q8TDN4 633 aa22.03■■□□□ 1.12
CDK5RAP3-228ENST00000583363 PLCH1Q4KWH8 1693 aa22.03■■□□□ 1.12
CDK5RAP3-228ENST00000583363 PLEKHG5O94827 1062 aa22.02■■□□□ 1.12
CDK5RAP3-228ENST00000583363 BLMP54132 1417 aaPredicted RBP22.02■■□□□ 1.12
CDK5RAP3-228ENST00000583363 SLIT3O75094 1523 aa22.01■■□□□ 1.11
CDK5RAP3-228ENST00000583363 NWD2Q9ULI1 1742 aa22■■□□□ 1.11
CDK5RAP3-228ENST00000583363 HAP1P54257 671 aaPredicted RBP22■■□□□ 1.11
CDK5RAP3-228ENST00000583363 MRS2Q9HD23 443 aa22■■□□□ 1.11
CDK5RAP3-228ENST00000583363 EMILIN1Q9Y6C2 1016 aa22■■□□□ 1.11
CDK5RAP3-228ENST00000583363 MAP2P11137 1827 aaKnown RBP21.99■■□□□ 1.11
CDK5RAP3-228ENST00000583363 VPS72Q15906 364 aa21.99■■□□□ 1.11
CDK5RAP3-228ENST00000583363 MAP3K19Q56UN5 1328 aa21.99■■□□□ 1.11
CDK5RAP3-228ENST00000583363 ARHGEF25Q86VW2 580 aa21.98■■□□□ 1.11
CDK5RAP3-228ENST00000583363 SEPT12Q8IYM1 358 aa21.98■■□□□ 1.11
CDK5RAP3-228ENST00000583363 PPM1GO15355 546 aaPredicted RBP21.97■■□□□ 1.11
CDK5RAP3-228ENST00000583363 DEFB132Q7Z7B7 95 aa21.97■■□□□ 1.11
CDK5RAP3-228ENST00000583363 INSRP06213 1382 aa21.97■■□□□ 1.11
CDK5RAP3-228ENST00000583363 NFAT5O94916 1531 aa21.96■■□□□ 1.11
CDK5RAP3-228ENST00000583363 CFAP53Q96M91 514 aa21.96■■□□□ 1.11
CDK5RAP3-228ENST00000583363 SMG6Q86US8 1419 aaKnown RBP21.96■■□□□ 1.11
CDK5RAP3-228ENST00000583363 ONECUT3O60422 494 aaPredicted RBP21.95■■□□□ 1.1
CDK5RAP3-228ENST00000583363 AMPHP49418 695 aa21.95■■□□□ 1.1
CDK5RAP3-228ENST00000583363 ZC3H6P61129 1189 aaKnown RBP21.95■■□□□ 1.1
CDK5RAP3-228ENST00000583363 PNISRQ8TF01 805 aaKnown RBP21.94■■□□□ 1.1
CDK5RAP3-228ENST00000583363 FAM83GA6ND36 823 aa21.93■■□□□ 1.1
CDK5RAP3-228ENST00000583363 KIF24Q5T7B8 1368 aa21.93■■□□□ 1.1
CDK5RAP3-228ENST00000583363 IP6K1Q92551 441 aa21.93■■□□□ 1.1
CDK5RAP3-228ENST00000583363 CCDC9Q9Y3X0 531 aaKnown RBP21.93■■□□□ 1.1
CDK5RAP3-228ENST00000583363 NRAPQ86VF7 1730 aa21.92■■□□□ 1.1
CDK5RAP3-228ENST00000583363 CRYBG1Q9Y4K1 1723 aa21.92■■□□□ 1.1
CDK5RAP3-228ENST00000583363 HOXC9P31274 260 aa21.92■■□□□ 1.1
CDK5RAP3-228ENST00000583363 HSP90AB2PQ58FF8 381 aa21.92■■□□□ 1.1
CDK5RAP3-228ENST00000583363 CPDO75976 1380 aa21.91■■□□□ 1.1
CDK5RAP3-228ENST00000583363 PHRF1Q9P1Y6 1649 aaKnown RBP21.91■■□□□ 1.1
CDK5RAP3-228ENST00000583363 ZBTB7CA1YPR0 619 aa21.9■■□□□ 1.1
CDK5RAP3-228ENST00000583363 DIAPH1O60610 1272 aaKnown RBP21.9■■□□□ 1.1
CDK5RAP3-228ENST00000583363 KRT27Q7Z3Y8 459 aa21.9■■□□□ 1.1
CDK5RAP3-228ENST00000583363 FLT4P35916 1363 aa21.89■■□□□ 1.1
CDK5RAP3-228ENST00000583363 SF3B2Q13435 895 aaKnown RBP21.89■■□□□ 1.09
CDK5RAP3-228ENST00000583363 RTL1A6NKG5 1358 aa21.88■■□□□ 1.09
CDK5RAP3-228ENST00000583363 KIAA0232Q92628 1395 aa21.88■■□□□ 1.09
CDK5RAP3-228ENST00000583363 IL13P35225 146 aa21.88■■□□□ 1.09
CDK5RAP3-228ENST00000583363 PEAK1Q9H792 1746 aa21.88■■□□□ 1.09
CDK5RAP3-228ENST00000583363 AXIN2Q9Y2T1 843 aa21.87■■□□□ 1.09
CDK5RAP3-228ENST00000583363 COL3A1P02461 1466 aaPredicted RBP21.87■■□□□ 1.09
CDK5RAP3-228ENST00000583363 EIF4A2Q14240 407 aaKnown RBP21.86■■□□□ 1.09
CDK5RAP3-228ENST00000583363 CHRNA2Q15822 529 aa21.86■■□□□ 1.09
CDK5RAP3-228ENST00000583363 NUDCQ9Y266 331 aa21.86■■□□□ 1.09
CDK5RAP3-228ENST00000583363 LTN1O94822 1766 aa21.85■■□□□ 1.09
CDK5RAP3-228ENST00000583363 COL14A1Q05707 1796 aaKnown RBP21.85■■□□□ 1.09
CDK5RAP3-228ENST00000583363 FAM9BQ8IZU0 186 aa21.85■■□□□ 1.09
CDK5RAP3-228ENST00000583363 PRDM11Q9NQV5 511 aa21.85■■□□□ 1.09
CDK5RAP3-228ENST00000583363 BTG4Q9NY30 223 aa21.85■■□□□ 1.09
CDK5RAP3-228ENST00000583363 A0A0G2JS52 829 aa21.84■■□□□ 1.09
CDK5RAP3-228ENST00000583363 MYT1Q01538 1121 aa21.84■■□□□ 1.09
CDK5RAP3-228ENST00000583363 FAM98CQ17RN3 349 aaKnown RBP21.84■■□□□ 1.09
CDK5RAP3-228ENST00000583363 WDR43Q15061 677 aaKnown RBP eCLIP21.83■■□□□ 1.09
CDK5RAP3-228ENST00000583363 ADAMTS8Q9UP79 889 aa21.83■■□□□ 1.09
CDK5RAP3-228ENST00000583363 LRP5O75197 1615 aa21.82■■□□□ 1.08
CDK5RAP3-228ENST00000583363 COL18A1P39060 1754 aa21.82■■□□□ 1.08
CDK5RAP3-228ENST00000583363 LTV1Q96GA3 475 aaPredicted RBP21.81■■□□□ 1.08
CDK5RAP3-228ENST00000583363 U2SURPO15042 1029 aaKnown RBP21.8■■□□□ 1.08
CDK5RAP3-228ENST00000583363 ANKRD24Q8TF21 1146 aa21.8■■□□□ 1.08
CDK5RAP3-228ENST00000583363 U2AF1L5P0DN76 240 aaPredicted RBP21.79■■□□□ 1.08
CDK5RAP3-228ENST00000583363 BAG6P46379 1132 aa21.79■■□□□ 1.08
CDK5RAP3-228ENST00000583363 U2AF1Q01081 240 aaKnown RBP eCLIP21.79■■□□□ 1.08
CDK5RAP3-228ENST00000583363 ABCC6O95255 1503 aa21.79■■□□□ 1.08
CDK5RAP3-228ENST00000583363 EYA1Q99502 592 aa21.78■■□□□ 1.08
CDK5RAP3-228ENST00000583363 SPATA31A5Q5VU36 1347 aa21.78■■□□□ 1.08
CDK5RAP3-228ENST00000583363 SPATA31A7Q8IWB4 1347 aa21.78■■□□□ 1.08
CDK5RAP3-228ENST00000583363 RGPD1P0DJD0 1748 aa21.77■■□□□ 1.08
CDK5RAP3-228ENST00000583363 THSD7AQ9UPZ6 1657 aa21.77■■□□□ 1.08
CDK5RAP3-228ENST00000583363 PSDA5PKW4 1024 aaPredicted RBP21.77■■□□□ 1.08
CDK5RAP3-228ENST00000583363 FAM182BQ5T319 152 aa21.77■■□□□ 1.08
CDK5RAP3-228ENST00000583363 CAMTA1Q9Y6Y1 1673 aa21.75■■□□□ 1.07
CDK5RAP3-228ENST00000583363 NBPF6Q5VWK0 638 aa21.75■■□□□ 1.07
CDK5RAP3-228ENST00000583363 NBPF4Q96M43 638 aa21.75■■□□□ 1.07
CDK5RAP3-228ENST00000583363 ERBB3P21860 1342 aa21.75■■□□□ 1.07
CDK5RAP3-228ENST00000583363 RGPD5Q99666 1765 aa21.74■■□□□ 1.07
CDK5RAP3-228ENST00000583363 FCHSD2O94868 740 aa21.74■■□□□ 1.07
CDK5RAP3-228ENST00000583363 EN1Q05925 392 aaPredicted RBP21.74■■□□□ 1.07
CDK5RAP3-228ENST00000583363 IGSF1Q8N6C5 1336 aa21.74■■□□□ 1.07
CDK5RAP3-228ENST00000583363 LMO7Q8WWI1 1683 aa21.73■■□□□ 1.07
CDK5RAP3-228ENST00000583363 TNS1Q9HBL0 1735 aaKnown RBP21.73■■□□□ 1.07
CDK5RAP3-228ENST00000583363 EVA1CP58658 441 aa21.73■■□□□ 1.07
CDK5RAP3-228ENST00000583363 SULT6B1Q6IMI4 303 aa21.73■■□□□ 1.07
CDK5RAP3-228ENST00000583363 HMOX1P09601 288 aa21.72■■□□□ 1.07
CDK5RAP3-228ENST00000583363 CSB-PGBD3P0DP91 1061 aa21.72■■□□□ 1.07
CDK5RAP3-228ENST00000583363 RSPH6AQ9H0K4 717 aa21.71■■□□□ 1.07
CDK5RAP3-228ENST00000583363 PNNQ9H307 717 aaKnown RBP21.71■■□□□ 1.07
CDK5RAP3-228ENST00000583363 AEBP1Q8IUX7 1158 aa21.7■■□□□ 1.06
CDK5RAP3-228ENST00000583363 PLEKHF1Q96S99 279 aa21.7■■□□□ 1.06
CDK5RAP3-228ENST00000583363 STRN4Q9NRL3 753 aa21.7■■□□□ 1.06
CDK5RAP3-228ENST00000583363 WDR17Q8IZU2 1322 aa21.7■■□□□ 1.06
CDK5RAP3-228ENST00000583363 COL5A2P05997 1499 aaPredicted RBP21.7■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 98.5 ms