RNA–Protein interactions for RNA: ENST00000580540.1

SREBF1-219, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 4

Gene SREBF1, Length 540 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-219ENST00000580540 ANKRD36BQ8N2N9 1353 aa23.15■■□□□ 1.3
SREBF1-219ENST00000580540 SF3B2Q13435 895 aaKnown RBP23.15■■□□□ 1.3
SREBF1-219ENST00000580540 BARGINQ6ZT62 677 aa23.15■■□□□ 1.3
SREBF1-219ENST00000580540 HSPA5P11021 654 aaKnown RBP23.14■■□□□ 1.29
SREBF1-219ENST00000580540 COG3Q96JB2 828 aa23.14■■□□□ 1.29
SREBF1-219ENST00000580540 NFAT5O94916 1531 aa23.13■■□□□ 1.29
SREBF1-219ENST00000580540 CRB1P82279 1406 aa23.13■■□□□ 1.29
SREBF1-219ENST00000580540 COL18A1P39060 1754 aa23.12■■□□□ 1.29
SREBF1-219ENST00000580540 PDE3BQ13370 1112 aa23.12■■□□□ 1.29
SREBF1-219ENST00000580540 THRAP3Q9Y2W1 955 aaKnown RBP23.12■■□□□ 1.29
SREBF1-219ENST00000580540 THSD7AQ9UPZ6 1657 aa23.12■■□□□ 1.29
SREBF1-219ENST00000580540 EP400Q96L91 3159 aa23.11■■□□□ 1.29
SREBF1-219ENST00000580540 WDR17Q8IZU2 1322 aa23.11■■□□□ 1.29
SREBF1-219ENST00000580540 BLMP54132 1417 aaPredicted RBP23.11■■□□□ 1.29
SREBF1-219ENST00000580540 RGPD5Q99666 1765 aa23.09■■□□□ 1.29
SREBF1-219ENST00000580540 OVOS2A0A0J9YW53 1432 aa23.08■■□□□ 1.29
SREBF1-219ENST00000580540 OVOS2Q6IE36 1432 aa23.08■■□□□ 1.29
SREBF1-219ENST00000580540 DEFB132Q7Z7B7 95 aa23.08■■□□□ 1.29
SREBF1-219ENST00000580540 GGNBP2Q9H3C7 697 aa23.08■■□□□ 1.29
SREBF1-219ENST00000580540 USP54Q70EL1 1684 aa23.07■■□□□ 1.28
SREBF1-219ENST00000580540 FYB1O15117 783 aa23.06■■□□□ 1.28
SREBF1-219ENST00000580540 FBLN1P23142 703 aa23.06■■□□□ 1.28
SREBF1-219ENST00000580540 FAM196AQ6ZSG2 479 aa23.05■■□□□ 1.28
SREBF1-219ENST00000580540 CARD10Q9BWT7 1032 aa23.05■■□□□ 1.28
SREBF1-219ENST00000580540 NLRP2Q9NX02 1062 aa23.04■■□□□ 1.28
SREBF1-219ENST00000580540 LTN1O94822 1766 aa23.04■■□□□ 1.28
SREBF1-219ENST00000580540 ANKRD24Q8TF21 1146 aa23.03■■□□□ 1.28
SREBF1-219ENST00000580540 LTV1Q96GA3 475 aaPredicted RBP23.03■■□□□ 1.28
SREBF1-219ENST00000580540 CARD14Q9BXL6 1004 aa23.03■■□□□ 1.28
SREBF1-219ENST00000580540 TRIM37O94972 964 aa23.02■■□□□ 1.28
SREBF1-219ENST00000580540 BAG6P46379 1132 aa23.02■■□□□ 1.28
SREBF1-219ENST00000580540 AMPHP49418 695 aa23.02■■□□□ 1.28
SREBF1-219ENST00000580540 DDB1Q16531 1140 aa23.02■■□□□ 1.28
SREBF1-219ENST00000580540 NSD3Q9BZ95 1437 aa23.01■■□□□ 1.27
SREBF1-219ENST00000580540 IP6K1Q92551 441 aa23.01■■□□□ 1.27
SREBF1-219ENST00000580540 ERBB3P21860 1342 aa23.01■■□□□ 1.27
SREBF1-219ENST00000580540 ABCC6O95255 1503 aa23■■□□□ 1.27
SREBF1-219ENST00000580540 CDCA7Q9BWT1 371 aaPredicted RBP23■■□□□ 1.27
SREBF1-219ENST00000580540 MAP3K19Q56UN5 1328 aa23■■□□□ 1.27
SREBF1-219ENST00000580540 MYOM1P52179 1685 aa23■■□□□ 1.27
SREBF1-219ENST00000580540 RRS1Q15050 365 aaKnown RBP22.99■■□□□ 1.27
SREBF1-219ENST00000580540 CCDC7Q96M83 1385 aa22.98■■□□□ 1.27
SREBF1-219ENST00000580540 EN1Q05925 392 aaPredicted RBP22.97■■□□□ 1.27
SREBF1-219ENST00000580540 PARP4Q9UKK3 1724 aaKnown RBP22.96■■□□□ 1.27
SREBF1-219ENST00000580540 HOXC9P31274 260 aa22.96■■□□□ 1.27
SREBF1-219ENST00000580540 C11orf95C9JLR9 678 aaPredicted RBP22.95■■□□□ 1.26
SREBF1-219ENST00000580540 EXOC5O00471 708 aa22.95■■□□□ 1.26
SREBF1-219ENST00000580540 KIF20BQ96Q89 1820 aa22.95■■□□□ 1.26
SREBF1-219ENST00000580540 CGNL1Q0VF96 1302 aa22.94■■□□□ 1.26
SREBF1-219ENST00000580540 APBA3O96018 575 aa22.94■■□□□ 1.26
SREBF1-219ENST00000580540 PANK3Q9H999 370 aa22.94■■□□□ 1.26
SREBF1-219ENST00000580540 RGPD1P0DJD0 1748 aa22.94■■□□□ 1.26
SREBF1-219ENST00000580540 MARCH10Q8NA82 808 aaPredicted RBP22.92■■□□□ 1.26
SREBF1-219ENST00000580540 LRRC37A3O60309 1634 aa22.92■■□□□ 1.26
SREBF1-219ENST00000580540 IL2RBP14784 551 aa22.91■■□□□ 1.26
SREBF1-219ENST00000580540 WNK3Q9BYP7 1800 aa22.91■■□□□ 1.26
SREBF1-219ENST00000580540 OVOS2A0A0G2JMS6 1433 aa22.91■■□□□ 1.26
SREBF1-219ENST00000580540 DISP2A7MBM2 1401 aa22.91■■□□□ 1.26
SREBF1-219ENST00000580540 PPM1GO15355 546 aaPredicted RBP22.89■■□□□ 1.25
SREBF1-219ENST00000580540 EZH2Q15910 746 aaKnown RBP22.89■■□□□ 1.25
SREBF1-219ENST00000580540 RTL1A6NKG5 1358 aa22.88■■□□□ 1.25
SREBF1-219ENST00000580540 TNNT2P45379 298 aaPredicted RBP22.87■■□□□ 1.25
SREBF1-219ENST00000580540 HSP90AB2PQ58FF8 381 aa22.87■■□□□ 1.25
SREBF1-219ENST00000580540 EMILIN1Q9Y6C2 1016 aa22.87■■□□□ 1.25
SREBF1-219ENST00000580540 TNS1Q9HBL0 1735 aaKnown RBP22.87■■□□□ 1.25
SREBF1-219ENST00000580540 KIF7Q2M1P5 1343 aa22.84■■□□□ 1.25
SREBF1-219ENST00000580540 TNS2Q63HR2 1409 aa22.84■■□□□ 1.25
SREBF1-219ENST00000580540 CAMKK2Q96RR4 588 aa22.84■■□□□ 1.25
SREBF1-219ENST00000580540 FLT4P35916 1363 aa22.84■■□□□ 1.25
SREBF1-219ENST00000580540 SMG6Q86US8 1419 aaKnown RBP22.83■■□□□ 1.25
SREBF1-219ENST00000580540 NBPF6Q5VWK0 638 aa22.83■■□□□ 1.25
SREBF1-219ENST00000580540 USHBP1Q8N6Y0 703 aa22.83■■□□□ 1.25
SREBF1-219ENST00000580540 NBPF4Q96M43 638 aa22.83■■□□□ 1.25
SREBF1-219ENST00000580540 PEAK1Q9H792 1746 aa22.82■■□□□ 1.24
SREBF1-219ENST00000580540 PTF1AQ7RTS3 328 aa22.82■■□□□ 1.24
SREBF1-219ENST00000580540 DDX54Q8TDD1 881 aaKnown RBP22.82■■□□□ 1.24
SREBF1-219ENST00000580540 KNSTRNQ9Y448 316 aa22.82■■□□□ 1.24
SREBF1-219ENST00000580540 FAM208AQ9UK61 1670 aaKnown RBP22.81■■□□□ 1.24
SREBF1-219ENST00000580540 INSRP06213 1382 aa22.81■■□□□ 1.24
SREBF1-219ENST00000580540 PSDA5PKW4 1024 aaPredicted RBP22.81■■□□□ 1.24
SREBF1-219ENST00000580540 BCL11BQ9C0K0 894 aaPredicted RBP22.81■■□□□ 1.24
SREBF1-219ENST00000580540 RGPD2P0DJD1 1756 aa22.81■■□□□ 1.24
SREBF1-219ENST00000580540 ACSBG1Q96GR2 724 aa22.8■■□□□ 1.24
SREBF1-219ENST00000580540 KIF24Q5T7B8 1368 aa22.79■■□□□ 1.24
SREBF1-219ENST00000580540 MORC1Q86VD1 984 aa22.78■■□□□ 1.24
SREBF1-219ENST00000580540 POLKQ9UBT6 870 aa22.78■■□□□ 1.24
SREBF1-219ENST00000580540 SBF2Q86WG5 1849 aa22.78■■□□□ 1.24
SREBF1-219ENST00000580540 PARD3Q8TEW0 1356 aa22.77■■□□□ 1.24
SREBF1-219ENST00000580540 KCNQ2O43526 872 aa22.77■■□□□ 1.24
SREBF1-219ENST00000580540 RAPGEF4Q8WZA2 1011 aa22.77■■□□□ 1.24
SREBF1-219ENST00000580540 BCL9O00512 1426 aa22.76■■□□□ 1.23
SREBF1-219ENST00000580540 MAP2P11137 1827 aaKnown RBP22.76■■□□□ 1.23
SREBF1-219ENST00000580540 R3HDM1Q15032 1099 aaKnown RBP22.76■■□□□ 1.23
SREBF1-219ENST00000580540 ZCRB1Q8TBF4 217 aaKnown RBP22.76■■□□□ 1.23
SREBF1-219ENST00000580540 KAT6BQ8WYB5 2073 aa22.76■■□□□ 1.23
SREBF1-219ENST00000580540 WASHC2AQ641Q2 1341 aa22.75■■□□□ 1.23
SREBF1-219ENST00000580540 TATP17735 454 aaPredicted RBP22.74■■□□□ 1.23
SREBF1-219ENST00000580540 NSD2O96028 1365 aa22.74■■□□□ 1.23
SREBF1-219ENST00000580540 MEGF6O75095 1541 aa22.73■■□□□ 1.23
SREBF1-219ENST00000580540 PLSCR1O15162 318 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms