RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 ZC3H6P61129 1189 aaKnown RBP14.34□□□□□ -0.11
SS18-213ENST00000579640 FAM9BQ8IZU0 186 aa14.34□□□□□ -0.11
SS18-213ENST00000579640 KIAA0232Q92628 1395 aa14.34□□□□□ -0.11
SS18-213ENST00000579640 HSP90AB2PQ58FF8 381 aa14.34□□□□□ -0.11
SS18-213ENST00000579640 ZBTB7CA1YPR0 619 aa14.33□□□□□ -0.12
SS18-213ENST00000579640 HSPA1LP34931 641 aa14.33□□□□□ -0.12
SS18-213ENST00000579640 IL13P35225 146 aa14.33□□□□□ -0.12
SS18-213ENST00000579640 COL18A1P39060 1754 aa14.32□□□□□ -0.12
SS18-213ENST00000579640 PRDM11Q9NQV5 511 aa14.32□□□□□ -0.12
SS18-213ENST00000579640 EIF4A2Q14240 407 aaKnown RBP14.31□□□□□ -0.12
SS18-213ENST00000579640 SPATA31A6Q5VVP1 1343 aa14.31□□□□□ -0.12
SS18-213ENST00000579640 ILDR1Q86SU0 546 aaPredicted RBP14.31□□□□□ -0.12
SS18-213ENST00000579640 U2SURPO15042 1029 aaKnown RBP14.3□□□□□ -0.12
SS18-213ENST00000579640 ADAMTS8Q9UP79 889 aa14.3□□□□□ -0.12
SS18-213ENST00000579640 COL14A1Q05707 1796 aaKnown RBP14.3□□□□□ -0.12
SS18-213ENST00000579640 LMO7Q8WWI1 1683 aa14.29□□□□□ -0.12
SS18-213ENST00000579640 U2AF1L5P0DN76 240 aaPredicted RBP14.29□□□□□ -0.12
SS18-213ENST00000579640 U2AF1Q01081 240 aaKnown RBP eCLIP14.29□□□□□ -0.122e-6■■■■□ 21.7
SS18-213ENST00000579640 RGPD1P0DJD0 1748 aa14.29□□□□□ -0.12
SS18-213ENST00000579640 PNNQ9H307 717 aaKnown RBP14.29□□□□□ -0.12
SS18-213ENST00000579640 CHRNA2Q15822 529 aa14.28□□□□□ -0.12
SS18-213ENST00000579640 AXIN2Q9Y2T1 843 aa14.28□□□□□ -0.12
SS18-213ENST00000579640 FAM208AQ9UK61 1670 aaKnown RBP14.28□□□□□ -0.12
SS18-213ENST00000579640 RGPD5Q99666 1765 aa14.28□□□□□ -0.12
SS18-213ENST00000579640 ANKRD24Q8TF21 1146 aa14.27□□□□□ -0.12
SS18-213ENST00000579640 ERBB3P21860 1342 aa14.27□□□□□ -0.12
SS18-213ENST00000579640 FAM83GA6ND36 823 aa14.27□□□□□ -0.13
SS18-213ENST00000579640 FCHSD2O94868 740 aa14.27□□□□□ -0.13
SS18-213ENST00000579640 LTV1Q96GA3 475 aaPredicted RBP14.27□□□□□ -0.13
SS18-213ENST00000579640 IGSF1Q8N6C5 1336 aa14.27□□□□□ -0.13
SS18-213ENST00000579640 NUTM2BA6NNL0 878 aaPredicted RBP14.26□□□□□ -0.13
SS18-213ENST00000579640 NUTM2EB1AL46 878 aaPredicted RBP14.26□□□□□ -0.13
SS18-213ENST00000579640 NUTM2AQ8IVF1 878 aaPredicted RBP14.26□□□□□ -0.13
SS18-213ENST00000579640 CAMTA1Q9Y6Y1 1673 aa14.26□□□□□ -0.13
SS18-213ENST00000579640 EYA1Q99502 592 aa14.25□□□□□ -0.13
SS18-213ENST00000579640 COL5A2P05997 1499 aaPredicted RBP14.25□□□□□ -0.13
SS18-213ENST00000579640 KDRP35968 1356 aa14.25□□□□□ -0.13
SS18-213ENST00000579640 RUNDC1Q96C34 613 aa14.25□□□□□ -0.13
SS18-213ENST00000579640 ADAMTS2O95450 1211 aa14.24□□□□□ -0.13
SS18-213ENST00000579640 RSPH6AQ9H0K4 717 aa14.24□□□□□ -0.13
SS18-213ENST00000579640 NCAPD2Q15021 1401 aa14.23□□□□□ -0.13
SS18-213ENST00000579640 WDR17Q8IZU2 1322 aa14.23□□□□□ -0.13
SS18-213ENST00000579640 NEFMP07197 916 aa14.23□□□□□ -0.13
SS18-213ENST00000579640 CSB-PGBD3P0DP91 1061 aa14.23□□□□□ -0.13
SS18-213ENST00000579640 SULT6B1Q6IMI4 303 aa14.23□□□□□ -0.13
SS18-213ENST00000579640 PLCH1Q4KWH8 1693 aa14.23□□□□□ -0.13
SS18-213ENST00000579640 NWD2Q9ULI1 1742 aa14.23□□□□□ -0.13
SS18-213ENST00000579640 HMOX1P09601 288 aa14.22□□□□□ -0.13
SS18-213ENST00000579640 BTG4Q9NY30 223 aa14.22□□□□□ -0.13
SS18-213ENST00000579640 EVA1CP58658 441 aa14.22□□□□□ -0.13
SS18-213ENST00000579640 NBPF6Q5VWK0 638 aa14.22□□□□□ -0.13
SS18-213ENST00000579640 NBPF4Q96M43 638 aa14.22□□□□□ -0.13
SS18-213ENST00000579640 PLEKHF1Q96S99 279 aa14.22□□□□□ -0.13
SS18-213ENST00000579640 LRP6O75581 1613 aa14.21□□□□□ -0.13
SS18-213ENST00000579640 RGPD2P0DJD1 1756 aa14.21□□□□□ -0.13
SS18-213ENST00000579640 MAPK8IP3Q9UPT6 1336 aa14.21□□□□□ -0.13
SS18-213ENST00000579640 PRKAR2BP31323 418 aa14.21□□□□□ -0.13
SS18-213ENST00000579640 HNRNPUQ00839 825 aaKnown RBP eCLIP14.21□□□□□ -0.13
SS18-213ENST00000579640 CCDC146Q8IYE0 955 aa14.21□□□□□ -0.13
SS18-213ENST00000579640 NGEFQ8N5V2 710 aa14.21□□□□□ -0.13
SS18-213ENST00000579640 SLIT2O94813 1529 aa14.21□□□□□ -0.14
SS18-213ENST00000579640 AEBP1Q8IUX7 1158 aa14.2□□□□□ -0.14
SS18-213ENST00000579640 YTHDC1Q96MU7 727 aaKnown RBP14.2□□□□□ -0.14
SS18-213ENST00000579640 NLRP2Q9NX02 1062 aa14.2□□□□□ -0.14
SS18-213ENST00000579640 NCBP3Q53F19 620 aaKnown RBP14.2□□□□□ -0.14
SS18-213ENST00000579640 NRAPQ86VF7 1730 aa14.2□□□□□ -0.14
SS18-213ENST00000579640 PLEKHG2Q9H7P9 1386 aa14.19□□□□□ -0.14
SS18-213ENST00000579640 CRB1P82279 1406 aa14.19□□□□□ -0.14
SS18-213ENST00000579640 TOM1L2Q6ZVM7 507 aa14.19□□□□□ -0.14
SS18-213ENST00000579640 CARD10Q9BWT7 1032 aa14.19□□□□□ -0.14
SS18-213ENST00000579640 STRN4Q9NRL3 753 aa14.19□□□□□ -0.14
SS18-213ENST00000579640 MEX3CQ5U5Q3 659 aaKnown RBP14.18□□□□□ -0.14
SS18-213ENST00000579640 APAF1O14727 1248 aa14.18□□□□□ -0.14
SS18-213ENST00000579640 FNBP4Q8N3X1 1017 aaPredicted RBP14.18□□□□□ -0.14
SS18-213ENST00000579640 TCP11L2Q8N4U5 519 aa14.18□□□□□ -0.14
SS18-213ENST00000579640 USHBP1Q8N6Y0 703 aa14.18□□□□□ -0.14
SS18-213ENST00000579640 NGLY1Q96IV0 654 aa14.18□□□□□ -0.14
SS18-213ENST00000579640 C8orf37Q96NL8 207 aa14.18□□□□□ -0.14
SS18-213ENST00000579640 LARP1Q6PKG0 1096 aaKnown RBP14.17□□□□□ -0.14
SS18-213ENST00000579640 ZBED9Q6R2W3 1325 aa14.16□□□□□ -0.14
SS18-213ENST00000579640 TNKS1BP1Q9C0C2 1729 aaKnown RBP14.16□□□□□ -0.14
SS18-213ENST00000579640 UNC5CLQ8IV45 518 aa14.15□□□□□ -0.14
SS18-213ENST00000579640 RAPGEF4Q8WZA2 1011 aa14.15□□□□□ -0.14
SS18-213ENST00000579640 PHACTR3Q96KR7 559 aa14.15□□□□□ -0.14
SS18-213ENST00000579640 TMPOP42166 694 aaKnown RBP14.15□□□□□ -0.14
SS18-213ENST00000579640 NFE2L2Q16236 605 aa14.15□□□□□ -0.14
SS18-213ENST00000579640 GAS2L2Q8NHY3 880 aa14.15□□□□□ -0.14
SS18-213ENST00000579640 TATP17735 454 aaPredicted RBP14.14□□□□□ -0.15
SS18-213ENST00000579640 CCDC27Q2M243 656 aa14.14□□□□□ -0.15
SS18-213ENST00000579640 AMOTQ4VCS5 1084 aa14.14□□□□□ -0.15
SS18-213ENST00000579640 BCL9LQ86UU0 1499 aa14.14□□□□□ -0.15
SS18-213ENST00000579640 PLEKHO1Q53GL0 409 aaPredicted RBP14.13□□□□□ -0.15
SS18-213ENST00000579640 PARP4Q9UKK3 1724 aaKnown RBP14.13□□□□□ -0.15
SS18-213ENST00000579640 THRAP3Q9Y2W1 955 aaKnown RBP14.13□□□□□ -0.15
SS18-213ENST00000579640 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.13□□□□□ -0.153e-7■■□□□ 13.5
SS18-213ENST00000579640 USP21Q9UK80 565 aa14.13□□□□□ -0.15
SS18-213ENST00000579640 RIPK4P57078 832 aa14.12□□□□□ -0.15
SS18-213ENST00000579640 LMOD3Q0VAK6 560 aa14.12□□□□□ -0.15
SS18-213ENST00000579640 VPS72Q15906 364 aa14.12□□□□□ -0.15
SS18-213ENST00000579640 MEGF6O75095 1541 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms