RNA–Protein interactions for RNA: ENST00000578996.1

CDK5RAP3-211, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 2

Gene CDK5RAP3, Length 566 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-211ENST00000578996 SLC12A5Q9H2X9 1139 aa13.01□□□□□ -0.33
CDK5RAP3-211ENST00000578996 WDR17Q8IZU2 1322 aa13.01□□□□□ -0.33
CDK5RAP3-211ENST00000578996 MON2Q7Z3U7 1717 aa13.01□□□□□ -0.33
CDK5RAP3-211ENST00000578996 PARP4Q9UKK3 1724 aaKnown RBP13.01□□□□□ -0.33
CDK5RAP3-211ENST00000578996 NME9Q86XW9 330 aa13□□□□□ -0.33
CDK5RAP3-211ENST00000578996 CAMKK2Q96RR4 588 aa13□□□□□ -0.33
CDK5RAP3-211ENST00000578996 COL18A1P39060 1754 aa12.99□□□□□ -0.33
CDK5RAP3-211ENST00000578996 LRRC37A3O60309 1634 aa12.99□□□□□ -0.33
CDK5RAP3-211ENST00000578996 CD163L1Q9NR16 1453 aa12.99□□□□□ -0.33
CDK5RAP3-211ENST00000578996 OVOS2A0A0G2JMS6 1433 aa12.99□□□□□ -0.33
CDK5RAP3-211ENST00000578996 OVOS2A0A0J9YW53 1432 aa12.99□□□□□ -0.33
CDK5RAP3-211ENST00000578996 OVOS2Q6IE36 1432 aa12.99□□□□□ -0.33
CDK5RAP3-211ENST00000578996 NFAT5O94916 1531 aa12.98□□□□□ -0.33
CDK5RAP3-211ENST00000578996 A0A1W2PP64 1363 aa12.98□□□□□ -0.33
CDK5RAP3-211ENST00000578996 ST20-MTHFSA0A0A6YYL1 179 aa12.98□□□□□ -0.33
CDK5RAP3-211ENST00000578996 TERF2IPQ9NYB0 399 aa12.98□□□□□ -0.33
CDK5RAP3-211ENST00000578996 PARD3Q8TEW0 1356 aa12.97□□□□□ -0.33
CDK5RAP3-211ENST00000578996 RGPD5Q99666 1765 aa12.97□□□□□ -0.33
CDK5RAP3-211ENST00000578996 EDC4Q6P2E9 1401 aaKnown RBP12.96□□□□□ -0.33
CDK5RAP3-211ENST00000578996 USP31Q70CQ4 1352 aa12.96□□□□□ -0.33
CDK5RAP3-211ENST00000578996 LRP5O75197 1615 aa12.96□□□□□ -0.33
CDK5RAP3-211ENST00000578996 C11orf95C9JLR9 678 aaPredicted RBP12.96□□□□□ -0.33
CDK5RAP3-211ENST00000578996 CDCA7Q9BWT1 371 aaPredicted RBP12.96□□□□□ -0.33
CDK5RAP3-211ENST00000578996 CARD10Q9BWT7 1032 aa12.96□□□□□ -0.33
CDK5RAP3-211ENST00000578996 WNK3Q9BYP7 1800 aa12.95□□□□□ -0.34
CDK5RAP3-211ENST00000578996 NLRP2Q9NX02 1062 aa12.95□□□□□ -0.34
CDK5RAP3-211ENST00000578996 NBPF14Q5TI25 921 aa12.94□□□□□ -0.34
CDK5RAP3-211ENST00000578996 TESK2Q96S53 571 aa12.94□□□□□ -0.34
CDK5RAP3-211ENST00000578996 CCDC7Q96M83 1385 aa12.94□□□□□ -0.34
CDK5RAP3-211ENST00000578996 PEAK1Q9H792 1746 aa12.93□□□□□ -0.34
CDK5RAP3-211ENST00000578996 ABCC6O95255 1503 aa12.93□□□□□ -0.34
CDK5RAP3-211ENST00000578996 ERBB3P21860 1342 aa12.93□□□□□ -0.34
CDK5RAP3-211ENST00000578996 RREB1Q92766 1687 aa12.93□□□□□ -0.34
CDK5RAP3-211ENST00000578996 EXOC5O00471 708 aa12.93□□□□□ -0.34
CDK5RAP3-211ENST00000578996 MARCH10Q8NA82 808 aaPredicted RBP12.93□□□□□ -0.34
CDK5RAP3-211ENST00000578996 PUS7Q96PZ0 661 aaKnown RBP12.93□□□□□ -0.34
CDK5RAP3-211ENST00000578996 NUP188Q5SRE5 1749 aa12.93□□□□□ -0.34
CDK5RAP3-211ENST00000578996 NINLQ9Y2I6 1382 aa12.93□□□□□ -0.34
CDK5RAP3-211ENST00000578996 USP54Q70EL1 1684 aa12.93□□□□□ -0.34
CDK5RAP3-211ENST00000578996 LTN1O94822 1766 aa12.92□□□□□ -0.34
CDK5RAP3-211ENST00000578996 SLC24A1O60721 1099 aa12.92□□□□□ -0.34
CDK5RAP3-211ENST00000578996 ANKRD24Q8TF21 1146 aa12.92□□□□□ -0.34
CDK5RAP3-211ENST00000578996 USP47Q96K76 1375 aa12.92□□□□□ -0.34
CDK5RAP3-211ENST00000578996 TMF1P82094 1093 aa12.91□□□□□ -0.34
CDK5RAP3-211ENST00000578996 PTF1AQ7RTS3 328 aa12.91□□□□□ -0.34
CDK5RAP3-211ENST00000578996 LTV1Q96GA3 475 aaPredicted RBP12.91□□□□□ -0.34
CDK5RAP3-211ENST00000578996 COG3Q96JB2 828 aa12.91□□□□□ -0.34
CDK5RAP3-211ENST00000578996 PCGF6Q9BYE7 350 aa12.91□□□□□ -0.34
CDK5RAP3-211ENST00000578996 BCL11BQ9C0K0 894 aaPredicted RBP12.91□□□□□ -0.34
CDK5RAP3-211ENST00000578996 TNS2Q63HR2 1409 aa12.9□□□□□ -0.34
CDK5RAP3-211ENST00000578996 PLSCR1O15162 318 aa12.89□□□□□ -0.35
CDK5RAP3-211ENST00000578996 IL2RBP14784 551 aa12.89□□□□□ -0.35
CDK5RAP3-211ENST00000578996 ACSBG1Q96GR2 724 aa12.89□□□□□ -0.35
CDK5RAP3-211ENST00000578996 ANKRD36BQ8N2N9 1353 aa12.89□□□□□ -0.35
CDK5RAP3-211ENST00000578996 SBF2Q86WG5 1849 aa12.88□□□□□ -0.35
CDK5RAP3-211ENST00000578996 AMPHP49418 695 aa12.88□□□□□ -0.35
CDK5RAP3-211ENST00000578996 FBLN1P23142 703 aa12.87□□□□□ -0.35
CDK5RAP3-211ENST00000578996 IP6K1Q92551 441 aa12.87□□□□□ -0.35
CDK5RAP3-211ENST00000578996 BCL9O00512 1426 aa12.87□□□□□ -0.35
CDK5RAP3-211ENST00000578996 KCNQ2O43526 872 aa12.86□□□□□ -0.35
CDK5RAP3-211ENST00000578996 GGNBP2Q9H3C7 697 aa12.86□□□□□ -0.35
CDK5RAP3-211ENST00000578996 ANO8Q9HCE9 1232 aaPredicted RBP12.86□□□□□ -0.35
CDK5RAP3-211ENST00000578996 RGPD3A6NKT7 1758 aaPredicted RBP12.86□□□□□ -0.35
CDK5RAP3-211ENST00000578996 RGPD4Q7Z3J3 1758 aa12.86□□□□□ -0.35
CDK5RAP3-211ENST00000578996 MAP3K19Q56UN5 1328 aa12.86□□□□□ -0.35
CDK5RAP3-211ENST00000578996 HOXC9P31274 260 aa12.85□□□□□ -0.35
CDK5RAP3-211ENST00000578996 RRS1Q15050 365 aaKnown RBP12.85□□□□□ -0.35
CDK5RAP3-211ENST00000578996 CDCA8Q53HL2 280 aa12.85□□□□□ -0.35
CDK5RAP3-211ENST00000578996 DDX54Q8TDD1 881 aaKnown RBP12.85□□□□□ -0.35
CDK5RAP3-211ENST00000578996 PPP1R1BQ9UD71 204 aaPredicted RBP12.85□□□□□ -0.35
CDK5RAP3-211ENST00000578996 TXNRD1Q16881 649 aa12.84□□□□□ -0.35
CDK5RAP3-211ENST00000578996 SPON1Q9HCB6 807 aa12.84□□□□□ -0.35
CDK5RAP3-211ENST00000578996 PROM2Q8N271 834 aa12.83□□□□□ -0.36
CDK5RAP3-211ENST00000578996 POLR3GLQ9BT43 218 aa12.83□□□□□ -0.36
CDK5RAP3-211ENST00000578996 STK32BQ9NY57 414 aa12.83□□□□□ -0.36
CDK5RAP3-211ENST00000578996 NHSQ6T4R5 1651 aa12.83□□□□□ -0.36
CDK5RAP3-211ENST00000578996 FYB1O15117 783 aa12.82□□□□□ -0.36
CDK5RAP3-211ENST00000578996 FAM208AQ9UK61 1670 aaKnown RBP12.82□□□□□ -0.36
CDK5RAP3-211ENST00000578996 SYTL4Q96C24 671 aaPredicted RBP12.81□□□□□ -0.36
CDK5RAP3-211ENST00000578996 TIMELESSQ9UNS1 1208 aa12.81□□□□□ -0.36
CDK5RAP3-211ENST00000578996 RTL1A6NKG5 1358 aa12.81□□□□□ -0.36
CDK5RAP3-211ENST00000578996 SMG6Q86US8 1419 aaKnown RBP12.8□□□□□ -0.36
CDK5RAP3-211ENST00000578996 NSD3Q9BZ95 1437 aa12.8□□□□□ -0.36
CDK5RAP3-211ENST00000578996 ZBTB7AO95365 584 aa12.8□□□□□ -0.36
CDK5RAP3-211ENST00000578996 USHBP1Q8N6Y0 703 aa12.8□□□□□ -0.36
CDK5RAP3-211ENST00000578996 PDGFDQ9GZP0 370 aaPredicted RBP12.8□□□□□ -0.36
CDK5RAP3-211ENST00000578996 CLSPNQ9HAW4 1339 aa12.8□□□□□ -0.36
CDK5RAP3-211ENST00000578996 KIF20BQ96Q89 1820 aa12.79□□□□□ -0.36
CDK5RAP3-211ENST00000578996 SLC15A2Q16348 729 aa12.79□□□□□ -0.36
CDK5RAP3-211ENST00000578996 CCER1Q8TC90 406 aaPredicted RBP12.78□□□□□ -0.36
CDK5RAP3-211ENST00000578996 ATF5Q9Y2D1 282 aaPredicted RBP12.78□□□□□ -0.36
CDK5RAP3-211ENST00000578996 MEGF6O75095 1541 aa12.78□□□□□ -0.36
CDK5RAP3-211ENST00000578996 MYOM1P52179 1685 aa12.77□□□□□ -0.36
CDK5RAP3-211ENST00000578996 RGPD2P0DJD1 1756 aa12.77□□□□□ -0.36
CDK5RAP3-211ENST00000578996 CASZ1Q86V15 1759 aa12.77□□□□□ -0.36
CDK5RAP3-211ENST00000578996 BTAF1O14981 1849 aa12.77□□□□□ -0.37
CDK5RAP3-211ENST00000578996 PPM1GO15355 546 aaPredicted RBP12.77□□□□□ -0.37
CDK5RAP3-211ENST00000578996 NBPF6Q5VWK0 638 aa12.77□□□□□ -0.37
CDK5RAP3-211ENST00000578996 ZCRB1Q8TBF4 217 aaKnown RBP12.77□□□□□ -0.37
CDK5RAP3-211ENST00000578996 RAPGEF4Q8WZA2 1011 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms