RNA–Protein interactions for RNA: ENST00000578044.5

SMARCE1-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,184 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-213ENST00000578044 EDC4Q6P2E9 1401 aaKnown RBP20.52■□□□□ 0.87
SMARCE1-213ENST00000578044 CLSPNQ9HAW4 1339 aa20.52■□□□□ 0.87
SMARCE1-213ENST00000578044 TERF2IPQ9NYB0 399 aa20.51■□□□□ 0.87
SMARCE1-213ENST00000578044 HDGFL2Q7Z4V5 671 aaPredicted RBP20.5■□□□□ 0.87
SMARCE1-213ENST00000578044 TESK2Q96S53 571 aa20.5■□□□□ 0.87
SMARCE1-213ENST00000578044 WNK3Q9BYP7 1800 aa20.49■□□□□ 0.87
SMARCE1-213ENST00000578044 USP35Q9P2H5 1018 aa20.49■□□□□ 0.87
SMARCE1-213ENST00000578044 LRP5O75197 1615 aa20.49■□□□□ 0.87
SMARCE1-213ENST00000578044 PEAK1Q9H792 1746 aa20.48■□□□□ 0.87
SMARCE1-213ENST00000578044 CARD10Q9BWT7 1032 aa20.48■□□□□ 0.87
SMARCE1-213ENST00000578044 RGPD3A6NKT7 1758 aaPredicted RBP20.47■□□□□ 0.87
SMARCE1-213ENST00000578044 RGPD4Q7Z3J3 1758 aa20.47■□□□□ 0.87
SMARCE1-213ENST00000578044 RGPD5Q99666 1765 aa20.47■□□□□ 0.87
SMARCE1-213ENST00000578044 CAMKK2Q96RR4 588 aa20.47■□□□□ 0.87
SMARCE1-213ENST00000578044 AXIN2Q9Y2T1 843 aa20.47■□□□□ 0.87
SMARCE1-213ENST00000578044 OVOS2A0A0G2JMS6 1433 aa20.46■□□□□ 0.87
SMARCE1-213ENST00000578044 OVOS2A0A0J9YW53 1432 aa20.46■□□□□ 0.87
SMARCE1-213ENST00000578044 OVOS2Q6IE36 1432 aa20.46■□□□□ 0.87
SMARCE1-213ENST00000578044 CCDC7Q96M83 1385 aa20.46■□□□□ 0.87
SMARCE1-213ENST00000578044 LRRC37A3O60309 1634 aa20.45■□□□□ 0.87
SMARCE1-213ENST00000578044 EN1Q05925 392 aaPredicted RBP20.45■□□□□ 0.86
SMARCE1-213ENST00000578044 FAM182BQ5T319 152 aa20.45■□□□□ 0.86
SMARCE1-213ENST00000578044 SBF2Q86WG5 1849 aa20.45■□□□□ 0.86
SMARCE1-213ENST00000578044 TRIM37O94972 964 aa20.44■□□□□ 0.86
SMARCE1-213ENST00000578044 TOM1L2Q6ZVM7 507 aa20.44■□□□□ 0.86
SMARCE1-213ENST00000578044 SLC12A5Q9H2X9 1139 aa20.44■□□□□ 0.86
SMARCE1-213ENST00000578044 RREB1Q92766 1687 aa20.44■□□□□ 0.86
SMARCE1-213ENST00000578044 ST20-MTHFSA0A0A6YYL1 179 aa20.43■□□□□ 0.86
SMARCE1-213ENST00000578044 A0A1W2PP64 1363 aa20.43■□□□□ 0.86
SMARCE1-213ENST00000578044 DDB1Q16531 1140 aa20.42■□□□□ 0.86
SMARCE1-213ENST00000578044 LTN1O94822 1766 aa20.41■□□□□ 0.86
SMARCE1-213ENST00000578044 TMC1Q8TDI8 760 aa20.41■□□□□ 0.86
SMARCE1-213ENST00000578044 PLSCR1O15162 318 aa20.4■□□□□ 0.86
SMARCE1-213ENST00000578044 APBA3O96018 575 aa20.4■□□□□ 0.86
SMARCE1-213ENST00000578044 ERBB3P21860 1342 aa20.39■□□□□ 0.85
SMARCE1-213ENST00000578044 CDCA8Q53HL2 280 aa20.39■□□□□ 0.85
SMARCE1-213ENST00000578044 SUGP2Q8IX01 1082 aaKnown RBP eCLIP20.39■□□□□ 0.85
SMARCE1-213ENST00000578044 ANKRD36BQ8N2N9 1353 aa20.38■□□□□ 0.85
SMARCE1-213ENST00000578044 EZH2Q15910 746 aaKnown RBP20.38■□□□□ 0.85
SMARCE1-213ENST00000578044 NME9Q86XW9 330 aa20.38■□□□□ 0.85
SMARCE1-213ENST00000578044 FAM208AQ9UK61 1670 aaKnown RBP20.38■□□□□ 0.85
SMARCE1-213ENST00000578044 USP47Q96K76 1375 aa20.37■□□□□ 0.85
SMARCE1-213ENST00000578044 TMF1P82094 1093 aa20.37■□□□□ 0.85
SMARCE1-213ENST00000578044 NUP188Q5SRE5 1749 aa20.36■□□□□ 0.85
SMARCE1-213ENST00000578044 ZBTB7CA1YPR0 619 aa20.36■□□□□ 0.85
SMARCE1-213ENST00000578044 BCL11BQ9C0K0 894 aaPredicted RBP20.36■□□□□ 0.85
SMARCE1-213ENST00000578044 CSB-PGBD3P0DP91 1061 aa20.35■□□□□ 0.85
SMARCE1-213ENST00000578044 TNS2Q63HR2 1409 aa20.35■□□□□ 0.85
SMARCE1-213ENST00000578044 EXOC5O00471 708 aa20.34■□□□□ 0.85
SMARCE1-213ENST00000578044 MARCH10Q8NA82 808 aaPredicted RBP20.33■□□□□ 0.85
SMARCE1-213ENST00000578044 IP6K1Q92551 441 aa20.33■□□□□ 0.85
SMARCE1-213ENST00000578044 NBPF14Q5TI25 921 aa20.32■□□□□ 0.84
SMARCE1-213ENST00000578044 SOX12O15370 315 aa20.31■□□□□ 0.84
SMARCE1-213ENST00000578044 COG3Q96JB2 828 aa20.31■□□□□ 0.84
SMARCE1-213ENST00000578044 R3HDM1Q15032 1099 aaKnown RBP20.3■□□□□ 0.84
SMARCE1-213ENST00000578044 PSDA5PKW4 1024 aaPredicted RBP20.29■□□□□ 0.84
SMARCE1-213ENST00000578044 IL2RBP14784 551 aa20.29■□□□□ 0.84
SMARCE1-213ENST00000578044 RTL1A6NKG5 1358 aa20.29■□□□□ 0.84
SMARCE1-213ENST00000578044 KIF24Q5T7B8 1368 aa20.29■□□□□ 0.84
SMARCE1-213ENST00000578044 ANKRD24Q8TF21 1146 aa20.28■□□□□ 0.84
SMARCE1-213ENST00000578044 NHSQ6T4R5 1651 aa20.26■□□□□ 0.83
SMARCE1-213ENST00000578044 NLRP2Q9NX02 1062 aa20.26■□□□□ 0.83
SMARCE1-213ENST00000578044 FYB1O15117 783 aa20.25■□□□□ 0.83
SMARCE1-213ENST00000578044 POTEDQ86YR6 584 aa20.24■□□□□ 0.83
SMARCE1-213ENST00000578044 MAP3K19Q56UN5 1328 aa20.24■□□□□ 0.83
SMARCE1-213ENST00000578044 HOXC9P31274 260 aa20.23■□□□□ 0.83
SMARCE1-213ENST00000578044 KIF20BQ96Q89 1820 aa20.22■□□□□ 0.83
SMARCE1-213ENST00000578044 MYOM1P52179 1685 aa20.22■□□□□ 0.83
SMARCE1-213ENST00000578044 CGNL1Q0VF96 1302 aa20.22■□□□□ 0.83
SMARCE1-213ENST00000578044 KAT6BQ8WYB5 2073 aa20.21■□□□□ 0.83
SMARCE1-213ENST00000578044 PROM2Q8N271 834 aa20.2■□□□□ 0.82
SMARCE1-213ENST00000578044 AMPHP49418 695 aa20.18■□□□□ 0.82
SMARCE1-213ENST00000578044 CASZ1Q86V15 1759 aa20.17■□□□□ 0.82
SMARCE1-213ENST00000578044 PTF1AQ7RTS3 328 aa20.17■□□□□ 0.82
SMARCE1-213ENST00000578044 INSRP06213 1382 aa20.17■□□□□ 0.82
SMARCE1-213ENST00000578044 BTAF1O14981 1849 aa20.16■□□□□ 0.82
SMARCE1-213ENST00000578044 TXNRD1Q16881 649 aa20.16■□□□□ 0.82
SMARCE1-213ENST00000578044 SPON1Q9HCB6 807 aa20.16■□□□□ 0.82
SMARCE1-213ENST00000578044 FLT4P35916 1363 aa20.15■□□□□ 0.82
SMARCE1-213ENST00000578044 SMG6Q86US8 1419 aaKnown RBP20.15■□□□□ 0.82
SMARCE1-213ENST00000578044 ANKRD26Q9UPS8 1709 aa20.15■□□□□ 0.82
SMARCE1-213ENST00000578044 KCNQ2O43526 872 aa20.14■□□□□ 0.81
SMARCE1-213ENST00000578044 CARD14Q9BXL6 1004 aa20.14■□□□□ 0.81
SMARCE1-213ENST00000578044 GGNBP2Q9H3C7 697 aa20.14■□□□□ 0.81
SMARCE1-213ENST00000578044 RGPD2P0DJD1 1756 aa20.13■□□□□ 0.81
SMARCE1-213ENST00000578044 PCGF6Q9BYE7 350 aa20.13■□□□□ 0.81
SMARCE1-213ENST00000578044 ANO8Q9HCE9 1232 aaPredicted RBP20.12■□□□□ 0.81
SMARCE1-213ENST00000578044 SHANK3Q9BYB0 1731 aa20.12■□□□□ 0.81
SMARCE1-213ENST00000578044 PAPPAQ13219 1627 aa20.12■□□□□ 0.81
SMARCE1-213ENST00000578044 NCAPD2Q15021 1401 aa20.11■□□□□ 0.81
SMARCE1-213ENST00000578044 PLEKHG2Q9H7P9 1386 aa20.11■□□□□ 0.81
SMARCE1-213ENST00000578044 SLC27A3Q5K4L6 730 aa20.11■□□□□ 0.81
SMARCE1-213ENST00000578044 NSD3Q9BZ95 1437 aa20.1■□□□□ 0.81
SMARCE1-213ENST00000578044 HMGB2P26583 209 aaKnown RBP20.1■□□□□ 0.81
SMARCE1-213ENST00000578044 EIF4G2P78344 907 aaKnown RBP eCLIP20.1■□□□□ 0.81
SMARCE1-213ENST00000578044 SLC15A2Q16348 729 aa20.1■□□□□ 0.81
SMARCE1-213ENST00000578044 ZCRB1Q8TBF4 217 aaKnown RBP20.1■□□□□ 0.81
SMARCE1-213ENST00000578044 STK32BQ9NY57 414 aa20.1■□□□□ 0.81
SMARCE1-213ENST00000578044 RRS1Q15050 365 aaKnown RBP20.09■□□□□ 0.81
SMARCE1-213ENST00000578044 NBPF6Q5VWK0 638 aa20.09■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms