RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 ZBTB33Q86T24 672 aa11.52□□□□□ -0.57
SMCHD1-202ENST00000577300 CCDC116Q8IYX3 515 aa11.52□□□□□ -0.57
SMCHD1-202ENST00000577300 PURBQ96QR8 312 aaKnown RBP11.52□□□□□ -0.57
SMCHD1-202ENST00000577300 OCSTAMPQ9BR26 566 aa11.52□□□□□ -0.57
SMCHD1-202ENST00000577300 EMILIN1Q9Y6C2 1016 aa11.52□□□□□ -0.57
SMCHD1-202ENST00000577300 SLC10A4Q96EP9 437 aa11.51□□□□□ -0.57
SMCHD1-202ENST00000577300 MEIOBQ8N635 442 aa11.5□□□□□ -0.57
SMCHD1-202ENST00000577300 NXF1Q9UBU9 619 aaKnown RBP11.5□□□□□ -0.57
SMCHD1-202ENST00000577300 TPRNQ4KMQ1 711 aa11.49□□□□□ -0.57
SMCHD1-202ENST00000577300 NPAS3Q8IXF0 933 aa11.49□□□□□ -0.57
SMCHD1-202ENST00000577300 KCTD15Q96SI1 283 aaPredicted RBP11.49□□□□□ -0.57
SMCHD1-202ENST00000577300 WIPF1O43516 503 aa11.47□□□□□ -0.57
SMCHD1-202ENST00000577300 LINC00528Q8N1L1 170 aa11.47□□□□□ -0.57
SMCHD1-202ENST00000577300 ADAM32Q8TC27 787 aa11.47□□□□□ -0.57
SMCHD1-202ENST00000577300 TRIM34Q9BYJ4 488 aa11.47□□□□□ -0.57
SMCHD1-202ENST00000577300 UPP2O95045 317 aa11.46□□□□□ -0.57
SMCHD1-202ENST00000577300 PPP1R26Q5T8A7 1209 aaPredicted RBP11.46□□□□□ -0.57
SMCHD1-202ENST00000577300 LCE2CQ5TA81 110 aa11.46□□□□□ -0.57
SMCHD1-202ENST00000577300 SLC16A10Q8TF71 515 aa11.46□□□□□ -0.57
SMCHD1-202ENST00000577300 PGPEP1Q9NXJ5 209 aa11.45□□□□□ -0.58
SMCHD1-202ENST00000577300 DHX9Q08211 1270 aaKnown RBP11.44□□□□□ -0.58
SMCHD1-202ENST00000577300 C6orf118Q5T5N4 469 aa11.44□□□□□ -0.58
SMCHD1-202ENST00000577300 TSEN34Q9BSV6 310 aaKnown RBP11.44□□□□□ -0.58
SMCHD1-202ENST00000577300 BMP2P12643 396 aa11.43□□□□□ -0.58
SMCHD1-202ENST00000577300 NBPF20Q3BBV1 942 aa11.43□□□□□ -0.58
SMCHD1-202ENST00000577300 INTS6LQ5JSJ4 861 aaKnown RBP11.43□□□□□ -0.58
SMCHD1-202ENST00000577300 Q6ZVU0 165 aa11.42□□□□□ -0.58
SMCHD1-202ENST00000577300 GJD4Q96KN9 370 aaPredicted RBP11.42□□□□□ -0.58
SMCHD1-202ENST00000577300 H3BM21 787 aa11.41□□□□□ -0.58
SMCHD1-202ENST00000577300 SOBPA7XYQ1 873 aa11.4□□□□□ -0.58
SMCHD1-202ENST00000577300 DZIP3Q86Y13 1208 aaKnown RBP11.4□□□□□ -0.58
SMCHD1-202ENST00000577300 BANK1Q8NDB2 785 aa11.4□□□□□ -0.58
SMCHD1-202ENST00000577300 SOS2Q07890 1332 aaPredicted RBP11.39□□□□□ -0.59
SMCHD1-202ENST00000577300 SOCS7O14512 581 aa11.39□□□□□ -0.59
SMCHD1-202ENST00000577300 MAN1A2O60476 641 aa11.39□□□□□ -0.59
SMCHD1-202ENST00000577300 IRF7Q92985 503 aa11.39□□□□□ -0.59
SMCHD1-202ENST00000577300 CBLBQ13191 982 aa11.38□□□□□ -0.59
SMCHD1-202ENST00000577300 INSM1Q01101 510 aaPredicted RBP11.37□□□□□ -0.59
SMCHD1-202ENST00000577300 ZBBXA8MT70 800 aa11.36□□□□□ -0.59
SMCHD1-202ENST00000577300 ESPNB1AK53 854 aa11.36□□□□□ -0.59
SMCHD1-202ENST00000577300 VEGFBP49765 207 aa11.36□□□□□ -0.59
SMCHD1-202ENST00000577300 SPINT1O43278 529 aa11.35□□□□□ -0.59
SMCHD1-202ENST00000577300 DNMT3LQ9UJW3 386 aa11.35□□□□□ -0.59
SMCHD1-202ENST00000577300 SEPT12Q8IYM1 358 aa11.34□□□□□ -0.59
SMCHD1-202ENST00000577300 TTLL8A6PVC2 850 aa11.33□□□□□ -0.6
SMCHD1-202ENST00000577300 ERVH48-1M5A8F1 160 aa11.32□□□□□ -0.6
SMCHD1-202ENST00000577300 FBXO45P0C2W1 286 aa11.32□□□□□ -0.6
SMCHD1-202ENST00000577300 GMPRP36959 345 aa11.32□□□□□ -0.6
SMCHD1-202ENST00000577300 TMPRSS4Q9NRS4 437 aa11.32□□□□□ -0.6
SMCHD1-202ENST00000577300 ERBB4Q15303 1308 aa11.32□□□□□ -0.6
SMCHD1-202ENST00000577300 VSIG8P0DPA2 414 aa11.31□□□□□ -0.6
SMCHD1-202ENST00000577300 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.31□□□□□ -0.6
SMCHD1-202ENST00000577300 ZNF784Q8NCA9 323 aaPredicted RBP11.31□□□□□ -0.6
SMCHD1-202ENST00000577300 MTMR14Q8NCE2 650 aa11.31□□□□□ -0.6
SMCHD1-202ENST00000577300 RAB15P59190 212 aa11.3□□□□□ -0.6
SMCHD1-202ENST00000577300 STK17AQ9UEE5 414 aa11.3□□□□□ -0.6
SMCHD1-202ENST00000577300 APBB1O00213 710 aa11.29□□□□□ -0.6
SMCHD1-202ENST00000577300 LILRA1O75019 489 aa11.29□□□□□ -0.6
SMCHD1-202ENST00000577300 TRIM52Q96A61 297 aa11.29□□□□□ -0.6
SMCHD1-202ENST00000577300 AGBL1Q96MI9 1066 aa11.29□□□□□ -0.6
SMCHD1-202ENST00000577300 PCDHB9Q9Y5E1 797 aa11.29□□□□□ -0.6
SMCHD1-202ENST00000577300 NDUFB9Q9Y6M9 179 aa11.29□□□□□ -0.6
SMCHD1-202ENST00000577300 GPR37L1O60883 481 aa11.28□□□□□ -0.6
SMCHD1-202ENST00000577300 PPFIA3O75145 1194 aa11.28□□□□□ -0.6
SMCHD1-202ENST00000577300 ADH1AP07327 375 aa11.28□□□□□ -0.6
SMCHD1-202ENST00000577300 MCCD1P59942 119 aaPredicted RBP11.28□□□□□ -0.6
SMCHD1-202ENST00000577300 NR1H3Q13133 447 aa11.28□□□□□ -0.6
SMCHD1-202ENST00000577300 CCDC125Q86Z20 511 aa11.28□□□□□ -0.6
SMCHD1-202ENST00000577300 RELBQ01201 579 aa11.27□□□□□ -0.61
SMCHD1-202ENST00000577300 ZNF592Q92610 1267 aa11.27□□□□□ -0.61
SMCHD1-202ENST00000577300 SNRKQ9NRH2 765 aa11.27□□□□□ -0.61
SMCHD1-202ENST00000577300 GIGYF1O75420 1035 aaPredicted RBP11.26□□□□□ -0.61
SMCHD1-202ENST00000577300 ADD1P35611 737 aaKnown RBP11.26□□□□□ -0.61
SMCHD1-202ENST00000577300 FIGNL2A6NMB9 653 aa11.25□□□□□ -0.61
SMCHD1-202ENST00000577300 ZNF330Q9Y3S2 320 aaPredicted RBP11.25□□□□□ -0.61
SMCHD1-202ENST00000577300 CTSOP43234 321 aaPredicted RBP11.24□□□□□ -0.61
SMCHD1-202ENST00000577300 PTSQ03393 145 aa11.24□□□□□ -0.61
SMCHD1-202ENST00000577300 KDF1Q8NAX2 398 aaPredicted RBP11.24□□□□□ -0.61
SMCHD1-202ENST00000577300 INSM2Q96T92 566 aaPredicted RBP11.24□□□□□ -0.61
SMCHD1-202ENST00000577300 PTGIRP43119 386 aa11.23□□□□□ -0.61
SMCHD1-202ENST00000577300 RNF20Q5VTR2 975 aa11.23□□□□□ -0.61
SMCHD1-202ENST00000577300 ZNF395Q9H8N7 513 aaPredicted RBP11.23□□□□□ -0.61
SMCHD1-202ENST00000577300 POLMQ9NP87 494 aaPredicted RBP11.22□□□□□ -0.61
SMCHD1-202ENST00000577300 CYLDQ9NQC7 956 aa11.22□□□□□ -0.61
SMCHD1-202ENST00000577300 LORP23490 312 aaPredicted RBP11.21□□□□□ -0.61
SMCHD1-202ENST00000577300 RNF217Q8TC41 542 aa11.21□□□□□ -0.61
SMCHD1-202ENST00000577300 SLC35F4A4IF30 521 aa11.19□□□□□ -0.62
SMCHD1-202ENST00000577300 ZSCAN1Q8NBB4 408 aa11.19□□□□□ -0.62
SMCHD1-202ENST00000577300 ERVK-9P63128 1117 aa11.18□□□□□ -0.62
SMCHD1-202ENST00000577300 FOXD4L5Q5VV16 416 aaPredicted RBP11.18□□□□□ -0.62
SMCHD1-202ENST00000577300 CCDC155Q8N6L0 562 aa11.18□□□□□ -0.62
SMCHD1-202ENST00000577300 CC2D2BQ6DHV5 1058 aa11.17□□□□□ -0.62
SMCHD1-202ENST00000577300 NANOS1Q8WY41 292 aaKnown RBP11.17□□□□□ -0.62
SMCHD1-202ENST00000577300 FAM181BA6NEQ2 426 aa11.16□□□□□ -0.62
SMCHD1-202ENST00000577300 ATP5J2-PTCD1G3V325 749 aa11.16□□□□□ -0.62
SMCHD1-202ENST00000577300 PRM3Q9NNZ6 103 aa11.16□□□□□ -0.62
SMCHD1-202ENST00000577300 PRKCSHP14314 528 aaPredicted RBP11.15□□□□□ -0.62
SMCHD1-202ENST00000577300 TBC1D2BQ9UPU7 963 aa11.15□□□□□ -0.62
SMCHD1-202ENST00000577300 RNF144AP50876 292 aaPredicted RBP11.14□□□□□ -0.63
SMCHD1-202ENST00000577300 ITGA6P23229 1130 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms