RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 COL5A2P05997 1499 aaPredicted RBP24.7■■□□□ 1.55
VPS53-218ENST00000575207 PCNTO95613 3336 aa24.7■■□□□ 1.54
VPS53-218ENST00000575207 PAPPAQ13219 1627 aa24.69■■□□□ 1.54
VPS53-218ENST00000575207 KIF3CO14782 793 aa24.69■■□□□ 1.54
VPS53-218ENST00000575207 ZNF526Q8TF50 670 aaPredicted RBP24.69■■□□□ 1.54
VPS53-218ENST00000575207 C14orf93Q9H972 538 aaKnown RBP24.69■■□□□ 1.54
VPS53-218ENST00000575207 COL24A1Q17RW2 1714 aa24.69■■□□□ 1.54
VPS53-218ENST00000575207 TULP4Q9NRJ4 1543 aa24.67■■□□□ 1.54
VPS53-218ENST00000575207 NUTM2GQ5VZR2 741 aa24.66■■□□□ 1.54
VPS53-218ENST00000575207 RGL3Q3MIN7 710 aa24.65■■□□□ 1.54
VPS53-218ENST00000575207 SPATA31E1Q6ZUB1 1445 aa24.65■■□□□ 1.54
VPS53-218ENST00000575207 JMYQ8N9B5 988 aa24.65■■□□□ 1.54
VPS53-218ENST00000575207 POGKQ9P215 609 aa24.65■■□□□ 1.54
VPS53-218ENST00000575207 ZNF827Q17R98 1081 aa24.64■■□□□ 1.54
VPS53-218ENST00000575207 ITGAEP38570 1179 aa24.63■■□□□ 1.53
VPS53-218ENST00000575207 HIRIP3Q9BW71 556 aaPredicted RBP24.62■■□□□ 1.53
VPS53-218ENST00000575207 TOPAZ1Q8N9V7 1692 aa24.62■■□□□ 1.53
VPS53-218ENST00000575207 WASLO00401 505 aaPredicted RBP24.6■■□□□ 1.53
VPS53-218ENST00000575207 CDCA7Q9BWT1 371 aaPredicted RBP24.6■■□□□ 1.53
VPS53-218ENST00000575207 USP19O94966 1318 aa24.6■■□□□ 1.53
VPS53-218ENST00000575207 LOC105371045A0A1W2PR82 267 aa24.59■■□□□ 1.53
VPS53-218ENST00000575207 AKAP12Q02952 1782 aa24.58■■□□□ 1.53
VPS53-218ENST00000575207 CFAP70Q5T0N1 1121 aa24.58■■□□□ 1.53
VPS53-218ENST00000575207 KLRG1Q96E93 195 aa24.58■■□□□ 1.53
VPS53-218ENST00000575207 AKT1S1Q96B36 256 aa24.56■■□□□ 1.52
VPS53-218ENST00000575207 GCP02774 474 aa24.55■■□□□ 1.52
VPS53-218ENST00000575207 TOMM70O94826 608 aa24.54■■□□□ 1.52
VPS53-218ENST00000575207 MINK1Q8N4C8 1332 aaPredicted RBP24.54■■□□□ 1.52
VPS53-218ENST00000575207 QSER1Q2KHR3 1735 aa24.53■■□□□ 1.52
VPS53-218ENST00000575207 TOM1L2Q6ZVM7 507 aa24.53■■□□□ 1.52
VPS53-218ENST00000575207 SLC4A1APQ9BWU0 796 aaKnown RBP24.53■■□□□ 1.52
VPS53-218ENST00000575207 LRRC4BQ9NT99 713 aa24.53■■□□□ 1.52
VPS53-218ENST00000575207 PNPLA7Q6ZV29 1317 aa24.53■■□□□ 1.52
VPS53-218ENST00000575207 ABTB2Q8N961 1025 aa24.52■■□□□ 1.52
VPS53-218ENST00000575207 WNK3Q9BYP7 1800 aa24.51■■□□□ 1.51
VPS53-218ENST00000575207 WDR90Q96KV7 1748 aa24.49■■□□□ 1.51
VPS53-218ENST00000575207 WWC3Q9ULE0 1092 aa24.49■■□□□ 1.51
VPS53-218ENST00000575207 POLR3AO14802 1390 aaPredicted RBP24.49■■□□□ 1.51
VPS53-218ENST00000575207 NHSQ6T4R5 1651 aa24.49■■□□□ 1.51
VPS53-218ENST00000575207 NUDT16Q96DE0 195 aaKnown RBP24.48■■□□□ 1.51
VPS53-218ENST00000575207 ITSN1Q15811 1721 aa24.47■■□□□ 1.51
VPS53-218ENST00000575207 BRD4O60885 1362 aaPredicted RBP24.47■■□□□ 1.51
VPS53-218ENST00000575207 EXOC5O00471 708 aa24.47■■□□□ 1.51
VPS53-218ENST00000575207 NLRP13Q86W25 1043 aa24.47■■□□□ 1.51
VPS53-218ENST00000575207 WDR17Q8IZU2 1322 aa24.46■■□□□ 1.51
VPS53-218ENST00000575207 ACEP12821 1306 aa24.43■■□□□ 1.5
VPS53-218ENST00000575207 TRAK1Q9UPV9 953 aa24.43■■□□□ 1.5
VPS53-218ENST00000575207 CD2APQ9Y5K6 639 aa24.43■■□□□ 1.5
VPS53-218ENST00000575207 ARHGEF28Q8N1W1 1705 aaKnown RBP24.43■■□□□ 1.5
VPS53-218ENST00000575207 HTRA3P83110 453 aa24.42■■□□□ 1.5
VPS53-218ENST00000575207 ACSBG1Q96GR2 724 aa24.42■■□□□ 1.5
VPS53-218ENST00000575207 USP6P35125 1406 aa24.42■■□□□ 1.5
VPS53-218ENST00000575207 SLC27A3Q5K4L6 730 aa24.41■■□□□ 1.5
VPS53-218ENST00000575207 TFCP2L1Q9NZI6 479 aa24.41■■□□□ 1.5
VPS53-218ENST00000575207 CARD10Q9BWT7 1032 aa24.4■■□□□ 1.5
VPS53-218ENST00000575207 ADGRB1O14514 1584 aa24.4■■□□□ 1.5
VPS53-218ENST00000575207 TNS2Q63HR2 1409 aa24.39■■□□□ 1.5
VPS53-218ENST00000575207 PLEKHG3A1L390 1219 aa24.38■■□□□ 1.49
VPS53-218ENST00000575207 AXIN2Q9Y2T1 843 aa24.38■■□□□ 1.49
VPS53-218ENST00000575207 BTAF1O14981 1849 aa24.38■■□□□ 1.49
VPS53-218ENST00000575207 COL18A1P39060 1754 aa24.37■■□□□ 1.49
VPS53-218ENST00000575207 ZBTB7CA1YPR0 619 aa24.36■■□□□ 1.49
VPS53-218ENST00000575207 RBM46Q8TBY0 533 aaKnown RBP24.36■■□□□ 1.49
VPS53-218ENST00000575207 TUBGCP6Q96RT7 1819 aa24.35■■□□□ 1.49
VPS53-218ENST00000575207 CCDC61Q9Y6R9 512 aa24.34■■□□□ 1.49
VPS53-218ENST00000575207 SLIT3O75094 1523 aa24.3■■□□□ 1.48
VPS53-218ENST00000575207 HSPA1AP0DMV8 641 aaKnown RBP24.3■■□□□ 1.48
VPS53-218ENST00000575207 HSPA1BP0DMV9 641 aaKnown RBP24.3■■□□□ 1.48
VPS53-218ENST00000575207 ABCC6O95255 1503 aa24.3■■□□□ 1.48
VPS53-218ENST00000575207 CCDC7Q96M83 1385 aa24.29■■□□□ 1.48
VPS53-218ENST00000575207 FSTL1Q12841 308 aa24.29■■□□□ 1.48
VPS53-218ENST00000575207 CDK19Q9BWU1 502 aa24.28■■□□□ 1.48
VPS53-218ENST00000575207 NMRK2Q9NPI5 230 aa24.28■■□□□ 1.48
VPS53-218ENST00000575207 TRPM1Q7Z4N2 1603 aa24.28■■□□□ 1.48
VPS53-218ENST00000575207 COL23A1Q86Y22 540 aaPredicted RBP24.27■■□□□ 1.48
VPS53-218ENST00000575207 PPIP5K1Q6PFW1 1433 aa24.26■■□□□ 1.47
VPS53-218ENST00000575207 CSB-PGBD3P0DP91 1061 aa24.25■■□□□ 1.47
VPS53-218ENST00000575207 IGSF1Q8N6C5 1336 aa24.25■■□□□ 1.47
VPS53-218ENST00000575207 CICQ96RK0 1608 aaPredicted RBP24.24■■□□□ 1.47
VPS53-218ENST00000575207 KAT6BQ8WYB5 2073 aa24.24■■□□□ 1.47
VPS53-218ENST00000575207 NLRP6P59044 892 aa24.24■■□□□ 1.47
VPS53-218ENST00000575207 MSL1Q68DK7 614 aa24.24■■□□□ 1.47
VPS53-218ENST00000575207 CPSF1Q10570 1443 aaKnown RBP24.24■■□□□ 1.47
VPS53-218ENST00000575207 KCNQ4P56696 695 aa24.23■■□□□ 1.47
VPS53-218ENST00000575207 ARHGEF25Q86VW2 580 aa24.23■■□□□ 1.47
VPS53-218ENST00000575207 MSH5O43196 834 aa24.22■■□□□ 1.47
VPS53-218ENST00000575207 C16orf71Q8IYS4 520 aaPredicted RBP24.18■■□□□ 1.46
VPS53-218ENST00000575207 RGPD5Q99666 1765 aa24.16■■□□□ 1.46
VPS53-218ENST00000575207 IL2RBP14784 551 aa24.13■■□□□ 1.45
VPS53-218ENST00000575207 MPHOSPH9Q99550 1183 aa24.12■■□□□ 1.45
VPS53-218ENST00000575207 LY75O60449 1722 aa24.12■■□□□ 1.45
VPS53-218ENST00000575207 FAM161AQ3B820 660 aa24.11■■□□□ 1.45
VPS53-218ENST00000575207 KCNH5Q8NCM2 988 aa24.11■■□□□ 1.45
VPS53-218ENST00000575207 CCNL1Q9UK58 526 aaPredicted RBP24.1■■□□□ 1.45
VPS53-218ENST00000575207 C10orf71Q711Q0 1435 aa24.1■■□□□ 1.45
VPS53-218ENST00000575207 PIK3C2AO00443 1686 aa24.09■■□□□ 1.45
VPS53-218ENST00000575207 FLAD1Q8NFF5 587 aa24.08■■□□□ 1.45
VPS53-218ENST00000575207 SMC1BQ8NDV3 1235 aa24.05■■□□□ 1.44
VPS53-218ENST00000575207 NSD2O96028 1365 aa24.04■■□□□ 1.44
VPS53-218ENST00000575207 ANKRD36BQ8N2N9 1353 aa24.04■■□□□ 1.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms