RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 ARHGEF25Q86VW2 580 aa30.14■■■□□ 2.42
VPS53-216ENST00000574029 KCNH5Q8NCM2 988 aa30.14■■■□□ 2.42
VPS53-216ENST00000574029 TTC21AQ8NDW8 1320 aa30.14■■■□□ 2.42
VPS53-216ENST00000574029 RGPD5Q99666 1765 aa30.13■■■□□ 2.41
VPS53-216ENST00000574029 SBF2Q86WG5 1849 aa30.13■■■□□ 2.41
VPS53-216ENST00000574029 WDR17Q8IZU2 1322 aa30.13■■■□□ 2.41
VPS53-216ENST00000574029 MON2Q7Z3U7 1717 aa30.11■■■□□ 2.41
VPS53-216ENST00000574029 DDB1Q16531 1140 aa30.1■■■□□ 2.41
VPS53-216ENST00000574029 NBPF14Q5TI25 921 aa30.1■■■□□ 2.41
VPS53-216ENST00000574029 SBNO2Q9Y2G9 1366 aa30.1■■■□□ 2.41
VPS53-216ENST00000574029 RGPD3A6NKT7 1758 aaPredicted RBP30.1■■■□□ 2.41
VPS53-216ENST00000574029 RGPD4Q7Z3J3 1758 aa30.1■■■□□ 2.41
VPS53-216ENST00000574029 NFAT5O94916 1531 aa30.09■■■□□ 2.41
VPS53-216ENST00000574029 KTN1Q86UP2 1357 aaKnown RBP30.09■■■□□ 2.41
VPS53-216ENST00000574029 CDCA7Q9BWT1 371 aaPredicted RBP30.06■■■□□ 2.4
VPS53-216ENST00000574029 SOX12O15370 315 aa30.05■■■□□ 2.4
VPS53-216ENST00000574029 ABCC6O95255 1503 aa30.05■■■□□ 2.4
VPS53-216ENST00000574029 USP54Q70EL1 1684 aa30.04■■■□□ 2.4
VPS53-216ENST00000574029 CARD10Q9BWT7 1032 aa30.04■■■□□ 2.4
VPS53-216ENST00000574029 PLSCR1O15162 318 aa30.03■■■□□ 2.4
VPS53-216ENST00000574029 BCL9O00512 1426 aa30.03■■■□□ 2.4
VPS53-216ENST00000574029 USP31Q70CQ4 1352 aa30.02■■■□□ 2.4
VPS53-216ENST00000574029 CD163L1Q9NR16 1453 aa30.01■■■□□ 2.4
VPS53-216ENST00000574029 MARCH10Q8NA82 808 aaPredicted RBP30.01■■■□□ 2.39
VPS53-216ENST00000574029 CARD11Q9BXL7 1154 aa30.01■■■□□ 2.39
VPS53-216ENST00000574029 BCL11BQ9C0K0 894 aaPredicted RBP30.01■■■□□ 2.39
VPS53-216ENST00000574029 CSB-PGBD3P0DP91 1061 aa30■■■□□ 2.39
VPS53-216ENST00000574029 PTF1AQ7RTS3 328 aa29.98■■■□□ 2.39
VPS53-216ENST00000574029 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.97■■■□□ 2.394e-6■■■■□ 21.2
VPS53-216ENST00000574029 CCDC7Q96M83 1385 aa29.97■■■□□ 2.39
VPS53-216ENST00000574029 LTN1O94822 1766 aa29.94■■■□□ 2.38
VPS53-216ENST00000574029 EXOC5O00471 708 aa29.93■■■□□ 2.38
VPS53-216ENST00000574029 NME9Q86XW9 330 aa29.93■■■□□ 2.38
VPS53-216ENST00000574029 TMC1Q8TDI8 760 aa29.92■■■□□ 2.38
VPS53-216ENST00000574029 KCNQ2O43526 872 aa29.91■■■□□ 2.38
VPS53-216ENST00000574029 SLC12A5Q9H2X9 1139 aa29.91■■■□□ 2.38
VPS53-216ENST00000574029 SPON1Q9HCB6 807 aa29.91■■■□□ 2.38
VPS53-216ENST00000574029 TONSLQ96HA7 1378 aa29.9■■■□□ 2.38
VPS53-216ENST00000574029 TNS2Q63HR2 1409 aa29.9■■■□□ 2.38
VPS53-216ENST00000574029 EDC4Q6P2E9 1401 aaKnown RBP29.9■■■□□ 2.38
VPS53-216ENST00000574029 HDGFL2Q7Z4V5 671 aaPredicted RBP29.9■■■□□ 2.38
VPS53-216ENST00000574029 PROM2Q8N271 834 aa29.9■■■□□ 2.38
VPS53-216ENST00000574029 CASZ1Q86V15 1759 aa29.9■■■□□ 2.38
VPS53-216ENST00000574029 PUS7Q96PZ0 661 aaKnown RBP29.89■■■□□ 2.38
VPS53-216ENST00000574029 ANO8Q9HCE9 1232 aaPredicted RBP29.89■■■□□ 2.38
VPS53-216ENST00000574029 ERBB3P21860 1342 aa29.89■■■□□ 2.38
VPS53-216ENST00000574029 TERF2IPQ9NYB0 399 aa29.86■■■□□ 2.37
VPS53-216ENST00000574029 A0A1W2PP64 1363 aa29.86■■■□□ 2.37
VPS53-216ENST00000574029 NHSQ6T4R5 1651 aa29.85■■■□□ 2.37
VPS53-216ENST00000574029 NLRP2Q9NX02 1062 aa29.83■■■□□ 2.37
VPS53-216ENST00000574029 PPP1R1BQ9UD71 204 aaPredicted RBP29.83■■■□□ 2.37
VPS53-216ENST00000574029 TXNRD1Q16881 649 aa29.82■■■□□ 2.36
VPS53-216ENST00000574029 IL2RBP14784 551 aa29.8■■■□□ 2.36
VPS53-216ENST00000574029 ANKRD24Q8TF21 1146 aa29.8■■■□□ 2.36
VPS53-216ENST00000574029 NINLQ9Y2I6 1382 aa29.79■■■□□ 2.36
VPS53-216ENST00000574029 TESK2Q96S53 571 aa29.79■■■□□ 2.36
VPS53-216ENST00000574029 PDGFDQ9GZP0 370 aaPredicted RBP29.78■■■□□ 2.36
VPS53-216ENST00000574029 STK32BQ9NY57 414 aa29.75■■■□□ 2.35
VPS53-216ENST00000574029 FAM208AQ9UK61 1670 aaKnown RBP29.75■■■□□ 2.35
VPS53-216ENST00000574029 ST20-MTHFSA0A0A6YYL1 179 aa29.74■■■□□ 2.35
VPS53-216ENST00000574029 SLC15A2Q16348 729 aa29.74■■■□□ 2.35
VPS53-216ENST00000574029 IP6K1Q92551 441 aa29.74■■■□□ 2.35
VPS53-216ENST00000574029 ACSBG1Q96GR2 724 aa29.74■■■□□ 2.35
VPS53-216ENST00000574029 BTAF1O14981 1849 aa29.73■■■□□ 2.35
VPS53-216ENST00000574029 SLC24A1O60721 1099 aa29.71■■■□□ 2.35
VPS53-216ENST00000574029 ZBTB7AO95365 584 aa29.7■■■□□ 2.35
VPS53-216ENST00000574029 PAPPAQ13219 1627 aa29.7■■■□□ 2.34
VPS53-216ENST00000574029 MYOM1P52179 1685 aa29.69■■■□□ 2.34
VPS53-216ENST00000574029 PTGER2P43116 358 aa29.68■■■□□ 2.34
VPS53-216ENST00000574029 COG3Q96JB2 828 aa29.67■■■□□ 2.34
VPS53-216ENST00000574029 DCAF8L1A6NGE4 600 aa29.65■■■□□ 2.34
VPS53-216ENST00000574029 YY1P25490 414 aa29.65■■■□□ 2.34
VPS53-216ENST00000574029 ATF5Q9Y2D1 282 aaPredicted RBP29.65■■■□□ 2.34
VPS53-216ENST00000574029 MAP3K19Q56UN5 1328 aa29.65■■■□□ 2.34
VPS53-216ENST00000574029 ANKRD36BQ8N2N9 1353 aa29.64■■■□□ 2.34
VPS53-216ENST00000574029 LTV1Q96GA3 475 aaPredicted RBP29.64■■■□□ 2.34
VPS53-216ENST00000574029 HOXC9P31274 260 aa29.63■■■□□ 2.33
VPS53-216ENST00000574029 MTFR1LQ9H019 292 aa29.62■■■□□ 2.33
VPS53-216ENST00000574029 RGPD2P0DJD1 1756 aa29.62■■■□□ 2.33
VPS53-216ENST00000574029 KAT6BQ8WYB5 2073 aa29.6■■■□□ 2.33
VPS53-216ENST00000574029 FBLN1P23142 703 aa29.6■■■□□ 2.33
VPS53-216ENST00000574029 AMPHP49418 695 aa29.6■■■□□ 2.33
VPS53-216ENST00000574029 DDX54Q8TDD1 881 aaKnown RBP29.6■■■□□ 2.33
VPS53-216ENST00000574029 SGIP1Q9BQI5 828 aa29.59■■■□□ 2.33
VPS53-216ENST00000574029 SHANK3Q9BYB0 1731 aa29.58■■■□□ 2.33
VPS53-216ENST00000574029 LRRC4BQ9NT99 713 aa29.58■■■□□ 2.33
VPS53-216ENST00000574029 RTL1A6NKG5 1358 aa29.56■■■□□ 2.32
VPS53-216ENST00000574029 USP47Q96K76 1375 aa29.56■■■□□ 2.32
VPS53-216ENST00000574029 TMF1P82094 1093 aa29.56■■■□□ 2.32
VPS53-216ENST00000574029 DOT1LQ8TEK3 1739 aa29.55■■■□□ 2.32
VPS53-216ENST00000574029 ZNF827Q17R98 1081 aa29.55■■■□□ 2.32
VPS53-216ENST00000574029 QSER1Q2KHR3 1735 aa29.54■■■□□ 2.32
VPS53-216ENST00000574029 FYB1O15117 783 aa29.54■■■□□ 2.32
VPS53-216ENST00000574029 SLC27A3Q5K4L6 730 aa29.53■■■□□ 2.32
VPS53-216ENST00000574029 SYT17Q9BSW7 474 aa29.53■■■□□ 2.32
VPS53-216ENST00000574029 FHDC1Q9C0D6 1143 aaPredicted RBP29.53■■■□□ 2.32
VPS53-216ENST00000574029 MEGF6O75095 1541 aa29.53■■■□□ 2.32
VPS53-216ENST00000574029 TRIM26Q12899 539 aaPredicted RBP29.52■■■□□ 2.32
VPS53-216ENST00000574029 ZCRB1Q8TBF4 217 aaKnown RBP29.52■■■□□ 2.32
VPS53-216ENST00000574029 RRS1Q15050 365 aaKnown RBP29.51■■■□□ 2.31
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms