RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 BLOC1S3Q6QNY0 202 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 RNF19BQ6ZMZ0 732 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 TAS1R3Q7RTX0 852 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 GLYCTKQ8IVS8 523 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 ZSCAN29Q8IWY8 852 aaPredicted RBP3.2□□□□□ -1.9
CHD3-217ENST00000574022 GPKOWQ92917 476 aaPredicted RBP eCLIP3.2□□□□□ -1.9
CHD3-217ENST00000574022 PRIMPOLQ96LW4 560 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 SLC4A5Q9BY07 1137 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 TUT1Q9H6E5 874 aaKnown RBP3.2□□□□□ -1.9
CHD3-217ENST00000574022 ANO2Q9NQ90 1003 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 CXXC1Q9P0U4 656 aaPredicted RBP3.2□□□□□ -1.9
CHD3-217ENST00000574022 CHIC2Q9UKJ5 165 aa3.2□□□□□ -1.9
CHD3-217ENST00000574022 SALL2Q9Y467 1007 aaPredicted RBP3.2□□□□□ -1.9
CHD3-217ENST00000574022 ARHGAP33O14559 1287 aa3.19□□□□□ -1.9
CHD3-217ENST00000574022 FMNL1O95466 1100 aaPredicted RBP3.19□□□□□ -1.9
CHD3-217ENST00000574022 HOXB1P14653 301 aaPredicted RBP3.19□□□□□ -1.9
CHD3-217ENST00000574022 JUNDP17535 347 aa3.19□□□□□ -1.9
CHD3-217ENST00000574022 CANXP27824 592 aaKnown RBP3.19□□□□□ -1.9
CHD3-217ENST00000574022 TAGLNQ01995 201 aaKnown RBP3.19□□□□□ -1.9
CHD3-217ENST00000574022 FKBP4Q02790 459 aaKnown RBP eCLIP3.19□□□□□ -1.9
CHD3-217ENST00000574022 ZNF211Q13398 564 aaPredicted RBP3.19□□□□□ -1.9
CHD3-217ENST00000574022 CCDC102BQ68D86 513 aa3.19□□□□□ -1.9
CHD3-217ENST00000574022 FBXO33Q7Z6M2 555 aa3.19□□□□□ -1.9
CHD3-217ENST00000574022 LAPTM4BQ86VI4 370 aa3.19□□□□□ -1.9
CHD3-217ENST00000574022 CCDC125Q86Z20 511 aa3.19□□□□□ -1.9
CHD3-217ENST00000574022 SIX5Q8N196 739 aa3.19□□□□□ -1.9
CHD3-217ENST00000574022 GTF3C2Q8WUA4 911 aaPredicted RBP3.19□□□□□ -1.9
CHD3-217ENST00000574022 ASB16Q96NS5 453 aa3.19□□□□□ -1.9
CHD3-217ENST00000574022 HINFPQ9BQA5 517 aa3.19□□□□□ -1.9
CHD3-217ENST00000574022 ARHGAP9Q9BRR9 750 aa3.19□□□□□ -1.9
CHD3-217ENST00000574022 PRR14Q9BWN1 585 aa3.19□□□□□ -1.9
CHD3-217ENST00000574022 EVA1BQ9NVM1 165 aa3.19□□□□□ -1.9
CHD3-217ENST00000574022 PPP1R1BQ9UD71 204 aaPredicted RBP3.19□□□□□ -1.9
CHD3-217ENST00000574022 DCTN4Q9UJW0 460 aa3.19□□□□□ -1.9
CHD3-217ENST00000574022 DOLKQ9UPQ8 538 aa3.19□□□□□ -1.9
CHD3-217ENST00000574022 SFI1A8K8P3 1242 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 SNPHO15079 494 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 C21orf2O43822 256 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 DKK1O94907 266 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 GTF2IP78347 998 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 SF3B2Q13435 895 aaKnown RBP3.18□□□□□ -1.9
CHD3-217ENST00000574022 COL19A1Q14993 1142 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 OCLNQ16625 522 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 TSNAXIP1Q2TAA8 658 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 EAPPQ56P03 285 aaPredicted RBP3.18□□□□□ -1.9
CHD3-217ENST00000574022 NAALADL2Q58DX5 795 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 OXLD1Q5BKU9 147 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 NBPF14Q5TI25 921 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 ZBTB33Q86T24 672 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 DZIP3Q86Y13 1208 aaKnown RBP3.18□□□□□ -1.9
CHD3-217ENST00000574022 SCUBE3Q8IX30 993 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 ADAM32Q8TC27 787 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 ZFRQ96KR1 1074 aaKnown RBP3.18□□□□□ -1.9
CHD3-217ENST00000574022 OCSTAMPQ9BR26 566 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 NBPF3Q9H094 633 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 KIAA1024Q9UPX6 916 aa3.18□□□□□ -1.9
CHD3-217ENST00000574022 NR1I2O75469 434 aa3.17□□□□□ -1.9
CHD3-217ENST00000574022 RECKO95980 971 aa3.17□□□□□ -1.9
CHD3-217ENST00000574022 CCNYL3P0C7X3 344 aa3.17□□□□□ -1.9
CHD3-217ENST00000574022 POTEJP0CG39 1038 aa3.17□□□□□ -1.9
CHD3-217ENST00000574022 PSME1Q06323 249 aa3.17□□□□□ -1.9
CHD3-217ENST00000574022 SF3A1Q15459 793 aaKnown RBP3.17□□□□□ -1.9
CHD3-217ENST00000574022 ECM1Q16610 540 aa3.17□□□□□ -1.9
CHD3-217ENST00000574022 DMRTA1Q5VZB9 504 aa3.17□□□□□ -1.9
CHD3-217ENST00000574022 TPCN2Q8NHX9 752 aa3.17□□□□□ -1.9
CHD3-217ENST00000574022 UBXN4Q92575 508 aa3.17□□□□□ -1.9
CHD3-217ENST00000574022 THAP11Q96EK4 314 aa3.17□□□□□ -1.9
CHD3-217ENST00000574022 LRCH3Q96II8 777 aa3.17□□□□□ -1.9
CHD3-217ENST00000574022 CCDC85AQ96PX6 553 aaPredicted RBP3.17□□□□□ -1.9
CHD3-217ENST00000574022 MKNK1Q9BUB5 465 aa3.17□□□□□ -1.9
CHD3-217ENST00000574022 SEPT3Q9UH03 358 aa3.17□□□□□ -1.9
CHD3-217ENST00000574022 VPS9D1Q9Y2B5 631 aa3.17□□□□□ -1.9
CHD3-217ENST00000574022 DNMT3AQ9Y6K1 912 aaPredicted RBP3.17□□□□□ -1.9
CHD3-217ENST00000574022 SMARCA5O60264 1052 aaPredicted RBP3.16□□□□□ -1.9
CHD3-217ENST00000574022 PTCD1O75127 700 aaKnown RBP3.16□□□□□ -1.9
CHD3-217ENST00000574022 GIGYF1O75420 1035 aaPredicted RBP3.16□□□□□ -1.9
CHD3-217ENST00000574022 LGR5O75473 907 aa3.16□□□□□ -1.9
CHD3-217ENST00000574022 ERCC5P28715 1186 aaPredicted RBP3.16□□□□□ -1.9
CHD3-217ENST00000574022 PPP4CP60510 307 aa3.16□□□□□ -1.9
CHD3-217ENST00000574022 ARHGAP4P98171 946 aa3.16□□□□□ -1.9
CHD3-217ENST00000574022 USP4Q13107 963 aa3.16□□□□□ -1.9
CHD3-217ENST00000574022 RNF20Q5VTR2 975 aa3.16□□□□□ -1.9
CHD3-217ENST00000574022 MAMSTRQ6ZN01 415 aa3.16□□□□□ -1.9
CHD3-217ENST00000574022 RGL4Q8IZJ4 473 aa3.16□□□□□ -1.9
CHD3-217ENST00000574022 SPATA32Q96LK8 384 aa3.16□□□□□ -1.9
CHD3-217ENST00000574022 NUDT12Q9BQG2 462 aa3.16□□□□□ -1.9
CHD3-217ENST00000574022 BACH2Q9BYV9 841 aa3.16□□□□□ -1.9
CHD3-217ENST00000574022 SCUBE2Q9NQ36 999 aa3.16□□□□□ -1.9
CHD3-217ENST00000574022 CDKN2AIPQ9NXV6 580 aaPredicted RBP3.16□□□□□ -1.9
CHD3-217ENST00000574022 AXIN2Q9Y2T1 843 aa3.16□□□□□ -1.9
CHD3-217ENST00000574022 PCDHGA11Q9Y5H2 935 aa3.16□□□□□ -1.9
CHD3-217ENST00000574022 BHMG1C9JSJ3 638 aaPredicted RBP3.15□□□□□ -1.91
CHD3-217ENST00000574022 SCAMP3O14828 347 aaKnown RBP3.15□□□□□ -1.91
CHD3-217ENST00000574022 PPM1GO15355 546 aaPredicted RBP3.15□□□□□ -1.91
CHD3-217ENST00000574022 DXOO77932 396 aaKnown RBP3.15□□□□□ -1.91
CHD3-217ENST00000574022 FAM13AO94988 1023 aa3.15□□□□□ -1.91
CHD3-217ENST00000574022 WEE1P30291 646 aa3.15□□□□□ -1.91
CHD3-217ENST00000574022 MTMR3Q13615 1198 aa3.15□□□□□ -1.91
CHD3-217ENST00000574022 C9orf131Q5VYM1 1079 aa3.15□□□□□ -1.91
CHD3-217ENST00000574022 CAPN12Q6ZSI9 719 aa3.15□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms