RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 CCDC7Q96M83 1385 aa21.87■■□□□ 1.09
CHD3-215ENST00000572750 ZBTB7CA1YPR0 619 aa21.86■■□□□ 1.09
CHD3-215ENST00000572750 VPS72Q15906 364 aa21.86■■□□□ 1.09
CHD3-215ENST00000572750 BTG4Q9NY30 223 aa21.86■■□□□ 1.09
CHD3-215ENST00000572750 ANKRD26Q9UPS8 1709 aa21.86■■□□□ 1.09
CHD3-215ENST00000572750 UTRNP46939 3433 aa21.86■■□□□ 1.09
CHD3-215ENST00000572750 BAG6P46379 1132 aa21.85■■□□□ 1.09
CHD3-215ENST00000572750 CAMTA1Q9Y6Y1 1673 aa21.85■■□□□ 1.09
CHD3-215ENST00000572750 RGPD5Q99666 1765 aa21.84■■□□□ 1.09
CHD3-215ENST00000572750 WASHC2AQ641Q2 1341 aa21.84■■□□□ 1.09
CHD3-215ENST00000572750 KCNH5Q8NCM2 988 aa21.83■■□□□ 1.09
CHD3-215ENST00000572750 GGNBP2Q9H3C7 697 aa21.82■■□□□ 1.08
CHD3-215ENST00000572750 PANK3Q9H999 370 aa21.82■■□□□ 1.08
CHD3-215ENST00000572750 FYB1O15117 783 aa21.81■■□□□ 1.08
CHD3-215ENST00000572750 ZEB1P37275 1124 aaPredicted RBP21.81■■□□□ 1.08
CHD3-215ENST00000572750 COG3Q96JB2 828 aa21.81■■□□□ 1.08
CHD3-215ENST00000572750 COL5A2P05997 1499 aaPredicted RBP21.81■■□□□ 1.08
CHD3-215ENST00000572750 ABCC6O95255 1503 aa21.8■■□□□ 1.08
CHD3-215ENST00000572750 FAM182BQ5T319 152 aa21.8■■□□□ 1.08
CHD3-215ENST00000572750 AATKQ6ZMQ8 1374 aa21.79■■□□□ 1.08
CHD3-215ENST00000572750 TNS1Q9HBL0 1735 aaKnown RBP21.79■■□□□ 1.08
CHD3-215ENST00000572750 CGNL1Q0VF96 1302 aa21.79■■□□□ 1.08
CHD3-215ENST00000572750 RGPD1P0DJD0 1748 aa21.78■■□□□ 1.08
CHD3-215ENST00000572750 ARHGEF25Q86VW2 580 aa21.78■■□□□ 1.08
CHD3-215ENST00000572750 STRN4Q9NRL3 753 aa21.77■■□□□ 1.08
CHD3-215ENST00000572750 CCDC9Q9Y3X0 531 aaKnown RBP21.77■■□□□ 1.08
CHD3-215ENST00000572750 DISP2A7MBM2 1401 aa21.76■■□□□ 1.07
CHD3-215ENST00000572750 EZH2Q15910 746 aaKnown RBP21.75■■□□□ 1.07
CHD3-215ENST00000572750 FBLN1P23142 703 aa21.74■■□□□ 1.07
CHD3-215ENST00000572750 FAM98CQ17RN3 349 aaKnown RBP21.74■■□□□ 1.07
CHD3-215ENST00000572750 PEAK1Q9H792 1746 aa21.74■■□□□ 1.07
CHD3-215ENST00000572750 AXIN2Q9Y2T1 843 aa21.73■■□□□ 1.07
CHD3-215ENST00000572750 WNK3Q9BYP7 1800 aa21.73■■□□□ 1.07
CHD3-215ENST00000572750 THSD7AQ9UPZ6 1657 aa21.72■■□□□ 1.07
CHD3-215ENST00000572750 EVA1CP58658 441 aa21.71■■□□□ 1.07
CHD3-215ENST00000572750 LARP1Q6PKG0 1096 aaKnown RBP21.71■■□□□ 1.07
CHD3-215ENST00000572750 SPATA31A5Q5VU36 1347 aa21.71■■□□□ 1.07
CHD3-215ENST00000572750 SPATA31A7Q8IWB4 1347 aa21.71■■□□□ 1.07
CHD3-215ENST00000572750 NSD2O96028 1365 aa21.71■■□□□ 1.07
CHD3-215ENST00000572750 RRS1Q15050 365 aaKnown RBP21.7■■□□□ 1.06
CHD3-215ENST00000572750 CAMKK2Q96RR4 588 aa21.7■■□□□ 1.06
CHD3-215ENST00000572750 MAP3K19Q56UN5 1328 aa21.7■■□□□ 1.06
CHD3-215ENST00000572750 KNSTRNQ9Y448 316 aa21.69■■□□□ 1.06
CHD3-215ENST00000572750 CRB1P82279 1406 aa21.69■■□□□ 1.06
CHD3-215ENST00000572750 FAM208AQ9UK61 1670 aaKnown RBP21.69■■□□□ 1.06
CHD3-215ENST00000572750 A0A0G2JS52 829 aa21.68■■□□□ 1.06
CHD3-215ENST00000572750 MYT1Q01538 1121 aa21.68■■□□□ 1.06
CHD3-215ENST00000572750 USP35Q9P2H5 1018 aa21.68■■□□□ 1.06
CHD3-215ENST00000572750 SPATA31A1Q5TZJ5 1347 aa21.68■■□□□ 1.06
CHD3-215ENST00000572750 MAP2P11137 1827 aaKnown RBP21.68■■□□□ 1.06
CHD3-215ENST00000572750 RTL1A6NKG5 1358 aa21.67■■□□□ 1.06
CHD3-215ENST00000572750 CEP350Q5VT06 3117 aa21.66■■□□□ 1.06
CHD3-215ENST00000572750 WDR17Q8IZU2 1322 aa21.66■■□□□ 1.06
CHD3-215ENST00000572750 ERBB3P21860 1342 aa21.65■■□□□ 1.06
CHD3-215ENST00000572750 TNNT2P45379 298 aaPredicted RBP21.65■■□□□ 1.06
CHD3-215ENST00000572750 AMER1Q5JTC6 1135 aaPredicted RBP21.65■■□□□ 1.06
CHD3-215ENST00000572750 RGPD2P0DJD1 1756 aa21.65■■□□□ 1.06
CHD3-215ENST00000572750 PER1O15534 1290 aaPredicted RBP21.64■■□□□ 1.05
CHD3-215ENST00000572750 HOXC9P31274 260 aa21.64■■□□□ 1.05
CHD3-215ENST00000572750 IFFO2Q5TF58 517 aa21.64■■□□□ 1.05
CHD3-215ENST00000572750 CSB-PGBD3P0DP91 1061 aa21.63■■□□□ 1.05
CHD3-215ENST00000572750 AMPHP49418 695 aa21.63■■□□□ 1.05
CHD3-215ENST00000572750 TOM1L2Q6ZVM7 507 aa21.63■■□□□ 1.05
CHD3-215ENST00000572750 IP6K1Q92551 441 aa21.63■■□□□ 1.05
CHD3-215ENST00000572750 EMILIN1Q9Y6C2 1016 aa21.63■■□□□ 1.05
CHD3-215ENST00000572750 PARP4Q9UKK3 1724 aaKnown RBP21.63■■□□□ 1.05
CHD3-215ENST00000572750 RREB1Q92766 1687 aa21.63■■□□□ 1.05
CHD3-215ENST00000572750 LRRC37A3O60309 1634 aa21.62■■□□□ 1.05
CHD3-215ENST00000572750 ANKRD24Q8TF21 1146 aa21.62■■□□□ 1.05
CHD3-215ENST00000572750 FLT4P35916 1363 aa21.61■■□□□ 1.05
CHD3-215ENST00000572750 NUP188Q5SRE5 1749 aa21.61■■□□□ 1.05
CHD3-215ENST00000572750 MORC1Q86VD1 984 aa21.6■■□□□ 1.05
CHD3-215ENST00000572750 TCP11L2Q8N4U5 519 aa21.6■■□□□ 1.05
CHD3-215ENST00000572750 LTV1Q96GA3 475 aaPredicted RBP21.6■■□□□ 1.05
CHD3-215ENST00000572750 KIF24Q5T7B8 1368 aa21.6■■□□□ 1.05
CHD3-215ENST00000572750 TRIM37O94972 964 aa21.59■■□□□ 1.05
CHD3-215ENST00000572750 CNGB1Q14028 1251 aaPredicted RBP21.59■■□□□ 1.05
CHD3-215ENST00000572750 CC2D1BQ5T0F9 858 aaKnown RBP21.59■■□□□ 1.05
CHD3-215ENST00000572750 SMG6Q86US8 1419 aaKnown RBP21.59■■□□□ 1.05
CHD3-215ENST00000572750 PPM1GO15355 546 aaPredicted RBP21.58■■□□□ 1.05
CHD3-215ENST00000572750 BARGINQ6ZT62 677 aa21.57■■□□□ 1.04
CHD3-215ENST00000572750 ZNF784Q8NCA9 323 aaPredicted RBP21.57■■□□□ 1.04
CHD3-215ENST00000572750 INSRP06213 1382 aa21.57■■□□□ 1.04
CHD3-215ENST00000572750 HSP90AB2PQ58FF8 381 aa21.56■■□□□ 1.04
CHD3-215ENST00000572750 CARD10Q9BWT7 1032 aa21.56■■□□□ 1.04
CHD3-215ENST00000572750 NLRP2Q9NX02 1062 aa21.56■■□□□ 1.04
CHD3-215ENST00000572750 POLKQ9UBT6 870 aa21.56■■□□□ 1.04
CHD3-215ENST00000572750 THRAP3Q9Y2W1 955 aaKnown RBP21.56■■□□□ 1.04
CHD3-215ENST00000572750 NPC1L1Q9UHC9 1359 aa21.56■■□□□ 1.04
CHD3-215ENST00000572750 APBA3O96018 575 aa21.54■■□□□ 1.04
CHD3-215ENST00000572750 SENP3-EIF4A1A0A087X0R7 540 aa21.53■■□□□ 1.04
CHD3-215ENST00000572750 PARD3Q8TEW0 1356 aa21.52■■□□□ 1.04
CHD3-215ENST00000572750 SPON1Q9HCB6 807 aa21.51■■□□□ 1.03
CHD3-215ENST00000572750 KCNQ2O43526 872 aa21.5■■□□□ 1.03
CHD3-215ENST00000572750 PPP1R1BQ9UD71 204 aaPredicted RBP21.5■■□□□ 1.03
CHD3-215ENST00000572750 TNS2Q63HR2 1409 aa21.49■■□□□ 1.03
CHD3-215ENST00000572750 DDX10Q13206 875 aaKnown RBP21.49■■□□□ 1.03
CHD3-215ENST00000572750 FAM196AQ6ZSG2 479 aa21.48■■□□□ 1.03
CHD3-215ENST00000572750 USHBP1Q8N6Y0 703 aa21.48■■□□□ 1.03
CHD3-215ENST00000572750 SHANK3Q9BYB0 1731 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms