RNA–Protein interactions for RNA: ENST00000570242.1

ITGAM-208, Transcript of integrin subunit alpha M, human

TSL 3

Gene ITGAM, Length 428 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ITGAM-208	ENST00000570242	SLC52A1	Q9NWF4	448 aa		13.82	□□□□□ -0.2
ITGAM-208	ENST00000570242	KIAA1468	Q9P260	1216 aa		13.82	□□□□□ -0.2
ITGAM-208	ENST00000570242	TSKS	Q9UJT2	592 aa		13.82	□□□□□ -0.2
ITGAM-208	ENST00000570242	ZFYVE9	O95405	1425 aa		13.81	□□□□□ -0.2
ITGAM-208	ENST00000570242	XIRP1	Q702N8	1843 aa	Known RBP	13.81	□□□□□ -0.2
ITGAM-208	ENST00000570242	PADI6	Q6TGC4	694 aa		13.81	□□□□□ -0.2
ITGAM-208	ENST00000570242	PACS2	Q86VP3	889 aa		13.81	□□□□□ -0.2
ITGAM-208	ENST00000570242	RBM27	Q9P2N5	1060 aa	Known RBP	13.81	□□□□□ -0.2
ITGAM-208	ENST00000570242	EID1	Q9Y6B2	187 aa		13.81	□□□□□ -0.2
ITGAM-208	ENST00000570242	NBPF3	Q9H094	633 aa		13.8	□□□□□ -0.2
ITGAM-208	ENST00000570242	NUP155	O75694	1391 aa		13.8	□□□□□ -0.2
ITGAM-208	ENST00000570242	BHMG1	C9JSJ3	638 aa	Predicted RBP	13.79	□□□□□ -0.2
ITGAM-208	ENST00000570242	HIC1	Q14526	733 aa		13.79	□□□□□ -0.2
ITGAM-208	ENST00000570242	FAM198A	Q9UFP1	575 aa		13.78	□□□□□ -0.2
ITGAM-208	ENST00000570242	NAIP	Q13075	1403 aa		13.78	□□□□□ -0.2
ITGAM-208	ENST00000570242	NWD1	Q149M9	1564 aa		13.77	□□□□□ -0.21
ITGAM-208	ENST00000570242	MRPL50	Q8N5N7	158 aa	Known RBP	13.77	□□□□□ -0.21
ITGAM-208	ENST00000570242	SPHKAP	Q2M3C7	1700 aa		13.76	□□□□□ -0.21
ITGAM-208	ENST00000570242	RIMS2	Q9UQ26	1411 aa		13.76	□□□□□ -0.21
ITGAM-208	ENST00000570242	GPR37	O15354	613 aa		13.76	□□□□□ -0.21
ITGAM-208	ENST00000570242	TOM1	O60784	492 aa		13.76	□□□□□ -0.21
ITGAM-208	ENST00000570242	PIP4K2B	P78356	416 aa		13.76	□□□□□ -0.21
ITGAM-208	ENST00000570242	GNPAT	O15228	680 aa		13.75	□□□□□ -0.21
ITGAM-208	ENST00000570242	SLC26A8	Q96RN1	970 aa		13.75	□□□□□ -0.21
ITGAM-208	ENST00000570242	PLEKHG1	Q9ULL1	1385 aa		13.74	□□□□□ -0.21
ITGAM-208	ENST00000570242	NBPF26	B4DH59	902 aa		13.74	□□□□□ -0.21
ITGAM-208	ENST00000570242	TTC13	Q8NBP0	860 aa		13.74	□□□□□ -0.21
ITGAM-208	ENST00000570242	PNMA3	Q9UL41	463 aa		13.74	□□□□□ -0.21
ITGAM-208	ENST00000570242	HFM1	A2PYH4	1435 aa		13.73	□□□□□ -0.21
ITGAM-208	ENST00000570242	DISP3	Q9P2K9	1392 aa		13.73	□□□□□ -0.21
ITGAM-208	ENST00000570242	GOLGA8CP	A6NN73	597 aa		13.73	□□□□□ -0.21
ITGAM-208	ENST00000570242	SEPT9	Q9UHD8	586 aa	Predicted RBP	13.73	□□□□□ -0.21
ITGAM-208	ENST00000570242	KCNA6	P17658	529 aa		13.72	□□□□□ -0.21
ITGAM-208	ENST00000570242	HSPA1L	P34931	641 aa		13.72	□□□□□ -0.21
ITGAM-208	ENST00000570242	TATDN2	Q93075	761 aa		13.72	□□□□□ -0.21
ITGAM-208	ENST00000570242	NKTR	P30414	1462 aa	Known RBP	13.72	□□□□□ -0.21
ITGAM-208	ENST00000570242	SMAP	O00193	183 aa		13.71	□□□□□ -0.21
ITGAM-208	ENST00000570242	MMRN1	Q13201	1228 aa		13.71	□□□□□ -0.21
ITGAM-208	ENST00000570242	NUDT18	Q6ZVK8	323 aa		13.71	□□□□□ -0.21
ITGAM-208	ENST00000570242	PLSCR2	Q9NRY7	297 aa		13.71	□□□□□ -0.21
ITGAM-208	ENST00000570242	ADAMTS13	Q76LX8	1427 aa		13.71	□□□□□ -0.22
ITGAM-208	ENST00000570242	CLTCL1	P53675	1640 aa		13.71	□□□□□ -0.22
ITGAM-208	ENST00000570242	CHD2	O14647	1828 aa	Known RBP	13.71	□□□□□ -0.22
ITGAM-208	ENST00000570242	TMEM94	Q12767	1356 aa		13.71	□□□□□ -0.22
ITGAM-208	ENST00000570242	TRPM2	O94759	1503 aa		13.7	□□□□□ -0.22
ITGAM-208	ENST00000570242	FECH	P22830	423 aa		13.7	□□□□□ -0.22
ITGAM-208	ENST00000570242	LAPTM4B	Q86VI4	370 aa		13.7	□□□□□ -0.22
ITGAM-208	ENST00000570242	PPP1R15A	O75807	674 aa	Predicted RBP	13.69	□□□□□ -0.22
ITGAM-208	ENST00000570242	DIP2A	Q14689	1571 aa		13.69	□□□□□ -0.22
ITGAM-208	ENST00000570242	NRXN3	Q9Y4C0	1643 aa		13.68	□□□□□ -0.22
ITGAM-208	ENST00000570242	C3orf80	F5H4A9	247 aa		13.68	□□□□□ -0.22
ITGAM-208	ENST00000570242	NUTM2D	Q5VT03	806 aa	Predicted RBP	13.68	□□□□□ -0.22
ITGAM-208	ENST00000570242	RNF166	Q96A37	237 aa	Predicted RBP	13.68	□□□□□ -0.22
ITGAM-208	ENST00000570242	MED1	Q15648	1581 aa	Predicted RBP	13.67	□□□□□ -0.22
ITGAM-208	ENST00000570242	FAM98C	Q17RN3	349 aa	Known RBP	13.67	□□□□□ -0.22
ITGAM-208	ENST00000570242	ILDR2	Q71H61	639 aa		13.67	□□□□□ -0.22
ITGAM-208	ENST00000570242	ABCF1	Q8NE71	845 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
ITGAM-208	ENST00000570242	ZC3H15	Q8WU90	426 aa	Known RBP	13.67	□□□□□ -0.22
ITGAM-208	ENST00000570242	HDGF	P51858	240 aa	Known RBP	13.66	□□□□□ -0.22
ITGAM-208	ENST00000570242	NEXMIF	Q5QGS0	1516 aa		13.65	□□□□□ -0.22
ITGAM-208	ENST00000570242	FAM161A	Q3B820	660 aa		13.65	□□□□□ -0.22
ITGAM-208	ENST00000570242	KCTD12	Q96CX2	325 aa	Known RBP	13.65	□□□□□ -0.22
ITGAM-208	ENST00000570242	TBX22	Q9Y458	520 aa		13.65	□□□□□ -0.22
ITGAM-208	ENST00000570242	ADGRG1	Q9Y653	693 aa		13.65	□□□□□ -0.22
ITGAM-208	ENST00000570242	SETBP1	Q9Y6X0	1596 aa		13.65	□□□□□ -0.22
ITGAM-208	ENST00000570242	PROSER2	Q86WR7	435 aa	Predicted RBP	13.64	□□□□□ -0.23
ITGAM-208	ENST00000570242	RBM46	Q8TBY0	533 aa	Known RBP	13.64	□□□□□ -0.23
ITGAM-208	ENST00000570242	WNT2B	Q93097	391 aa		13.64	□□□□□ -0.23
ITGAM-208	ENST00000570242	ZFR	Q96KR1	1074 aa	Known RBP	13.64	□□□□□ -0.23
ITGAM-208	ENST00000570242	KIF1B	O60333	1816 aa		13.64	□□□□□ -0.23
ITGAM-208	ENST00000570242	ROBO1	Q9Y6N7	1651 aa		13.63	□□□□□ -0.23
ITGAM-208	ENST00000570242	PIK3R4	Q99570	1358 aa		13.63	□□□□□ -0.23
ITGAM-208	ENST00000570242	FAM135B	Q49AJ0	1406 aa		13.63	□□□□□ -0.23
ITGAM-208	ENST00000570242	PTPRU	Q92729	1446 aa		13.63	□□□□□ -0.23
ITGAM-208	ENST00000570242	XRN1	Q8IZH2	1706 aa	Known RBP	13.62	□□□□□ -0.23
ITGAM-208	ENST00000570242	OAT	P04181	439 aa		13.61	□□□□□ -0.23
ITGAM-208	ENST00000570242	ANKK1	Q8NFD2	765 aa		13.61	□□□□□ -0.23
ITGAM-208	ENST00000570242	TRIM52	Q96A61	297 aa		13.61	□□□□□ -0.23
ITGAM-208	ENST00000570242	EYA1	Q99502	592 aa		13.61	□□□□□ -0.23
ITGAM-208	ENST00000570242	MSH6	P52701	1360 aa		13.6	□□□□□ -0.23
ITGAM-208	ENST00000570242	MAP2K5	Q13163	448 aa		13.6	□□□□□ -0.23
ITGAM-208	ENST00000570242	KRI1	Q8N9T8	703 aa	Known RBP	13.6	□□□□□ -0.23
ITGAM-208	ENST00000570242	NCOA3	Q9Y6Q9	1424 aa		13.59	□□□□□ -0.23
ITGAM-208	ENST00000570242	ZMYND10	O75800	440 aa		13.59	□□□□□ -0.23
ITGAM-208	ENST00000570242	ZNF326	Q5BKZ1	582 aa	Known RBP	13.59	□□□□□ -0.23
ITGAM-208	ENST00000570242	SETD1A	O15047	1707 aa	Known RBP	13.59	□□□□□ -0.23
ITGAM-208	ENST00000570242	SIPA1L2	Q9P2F8	1722 aa	Predicted RBP	13.59	□□□□□ -0.23
ITGAM-208	ENST00000570242	BARGIN	Q6ZT62	677 aa		13.58	□□□□□ -0.24
ITGAM-208	ENST00000570242	MINK1	Q8N4C8	1332 aa	Predicted RBP	13.58	□□□□□ -0.24
ITGAM-208	ENST00000570242	MET	P08581	1390 aa		13.58	□□□□□ -0.24
ITGAM-208	ENST00000570242	PXYLP1	Q8TE99	480 aa		13.57	□□□□□ -0.24
ITGAM-208	ENST00000570242	PPL	O60437	1756 aa		13.57	□□□□□ -0.24
ITGAM-208	ENST00000570242	IRF6	O14896	467 aa		13.56	□□□□□ -0.24
ITGAM-208	ENST00000570242	METTL3	Q86U44	580 aa	Known RBP	13.56	□□□□□ -0.24
ITGAM-208	ENST00000570242	AMOTL2	Q9Y2J4	779 aa		13.56	□□□□□ -0.24
ITGAM-208	ENST00000570242	DNAJB2	P25686	324 aa		13.55	□□□□□ -0.24
ITGAM-208	ENST00000570242	SAMD7	Q7Z3H4	446 aa		13.55	□□□□□ -0.24
ITGAM-208	ENST00000570242	LRCH3	Q96II8	777 aa		13.55	□□□□□ -0.24
ITGAM-208	ENST00000570242	RCCD1	A6NED2	376 aa		13.54	□□□□□ -0.24
ITGAM-208	ENST00000570242	THSD4	Q6ZMP0	1018 aa		13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms