RNA–Protein interactions for RNA: ENST00000567549.2

LINC01238-205, Transcript of long intergenic non-protein coding RNA 1238, humanhuman

BASIC

Gene LINC01238, Length 1,107 nt, Biotype antisense RNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01238-205ENST00000567549 DDB1Q16531 1140 aa26.31■■□□□ 1.8
LINC01238-205ENST00000567549 PUS7Q96PZ0 661 aaKnown RBP26.31■■□□□ 1.8
LINC01238-205ENST00000567549 MON2Q7Z3U7 1717 aa26.31■■□□□ 1.8
LINC01238-205ENST00000567549 PSDA5PKW4 1024 aaPredicted RBP26.3■■□□□ 1.8
LINC01238-205ENST00000567549 CSB-PGBD3P0DP91 1061 aa26.3■■□□□ 1.8
LINC01238-205ENST00000567549 EZH2Q15910 746 aaKnown RBP26.3■■□□□ 1.8
LINC01238-205ENST00000567549 NBPF14Q5TI25 921 aa26.3■■□□□ 1.8
LINC01238-205ENST00000567549 ARHGEF25Q86VW2 580 aa26.3■■□□□ 1.8
LINC01238-205ENST00000567549 CAMKK2Q96RR4 588 aa26.3■■□□□ 1.8
LINC01238-205ENST00000567549 TERF2IPQ9NYB0 399 aa26.3■■□□□ 1.8
LINC01238-205ENST00000567549 COL18A1P39060 1754 aa26.28■■□□□ 1.8
LINC01238-205ENST00000567549 TMC1Q8TDI8 760 aa26.27■■□□□ 1.8
LINC01238-205ENST00000567549 R3HDM1Q15032 1099 aaKnown RBP26.26■■□□□ 1.79
LINC01238-205ENST00000567549 CCDC7Q96M83 1385 aa26.25■■□□□ 1.79
LINC01238-205ENST00000567549 NINLQ9Y2I6 1382 aa26.25■■□□□ 1.79
LINC01238-205ENST00000567549 SOX12O15370 315 aa26.25■■□□□ 1.79
LINC01238-205ENST00000567549 CARD10Q9BWT7 1032 aa26.25■■□□□ 1.79
LINC01238-205ENST00000567549 USP31Q70CQ4 1352 aa26.24■■□□□ 1.79
LINC01238-205ENST00000567549 EDC4Q6P2E9 1401 aaKnown RBP26.23■■□□□ 1.79
LINC01238-205ENST00000567549 WNK3Q9BYP7 1800 aa26.23■■□□□ 1.79
LINC01238-205ENST00000567549 TRIM26Q12899 539 aaPredicted RBP26.23■■□□□ 1.79
LINC01238-205ENST00000567549 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.23■■□□□ 1.79
LINC01238-205ENST00000567549 LRRC37A3O60309 1634 aa26.23■■□□□ 1.79
LINC01238-205ENST00000567549 USP54Q70EL1 1684 aa26.22■■□□□ 1.79
LINC01238-205ENST00000567549 RREB1Q92766 1687 aa26.22■■□□□ 1.79
LINC01238-205ENST00000567549 AXIN2Q9Y2T1 843 aa26.22■■□□□ 1.79
LINC01238-205ENST00000567549 NFAT5O94916 1531 aa26.22■■□□□ 1.79
LINC01238-205ENST00000567549 RGPD3A6NKT7 1758 aaPredicted RBP26.2■■□□□ 1.78
LINC01238-205ENST00000567549 RGPD4Q7Z3J3 1758 aa26.2■■□□□ 1.78
LINC01238-205ENST00000567549 RGPD5Q99666 1765 aa26.2■■□□□ 1.78
LINC01238-205ENST00000567549 EXOC5O00471 708 aa26.19■■□□□ 1.78
LINC01238-205ENST00000567549 BCL9O00512 1426 aa26.18■■□□□ 1.78
LINC01238-205ENST00000567549 PEAK1Q9H792 1746 aa26.17■■□□□ 1.78
LINC01238-205ENST00000567549 PLSCR1O15162 318 aa26.17■■□□□ 1.78
LINC01238-205ENST00000567549 BCL11BQ9C0K0 894 aaPredicted RBP26.17■■□□□ 1.78
LINC01238-205ENST00000567549 NUP188Q5SRE5 1749 aa26.16■■□□□ 1.78
LINC01238-205ENST00000567549 SBF2Q86WG5 1849 aa26.16■■□□□ 1.78
LINC01238-205ENST00000567549 SLC12A5Q9H2X9 1139 aa26.15■■□□□ 1.78
LINC01238-205ENST00000567549 CD163L1Q9NR16 1453 aa26.15■■□□□ 1.78
LINC01238-205ENST00000567549 NME9Q86XW9 330 aa26.14■■□□□ 1.78
LINC01238-205ENST00000567549 LTN1O94822 1766 aa26.13■■□□□ 1.77
LINC01238-205ENST00000567549 ERBB3P21860 1342 aa26.13■■□□□ 1.77
LINC01238-205ENST00000567549 A0A1W2PP64 1363 aa26.12■■□□□ 1.77
LINC01238-205ENST00000567549 NLRP2Q9NX02 1062 aa26.11■■□□□ 1.77
LINC01238-205ENST00000567549 TNS2Q63HR2 1409 aa26.11■■□□□ 1.77
LINC01238-205ENST00000567549 ST20-MTHFSA0A0A6YYL1 179 aa26.1■■□□□ 1.77
LINC01238-205ENST00000567549 CDCA8Q53HL2 280 aa26.09■■□□□ 1.77
LINC01238-205ENST00000567549 MARCH10Q8NA82 808 aaPredicted RBP26.09■■□□□ 1.77
LINC01238-205ENST00000567549 COG3Q96JB2 828 aa26.08■■□□□ 1.77
LINC01238-205ENST00000567549 IL2RBP14784 551 aa26.07■■□□□ 1.76
LINC01238-205ENST00000567549 TMF1P82094 1093 aa26.07■■□□□ 1.76
LINC01238-205ENST00000567549 TESK2Q96S53 571 aa26.07■■□□□ 1.76
LINC01238-205ENST00000567549 FAM208AQ9UK61 1670 aaKnown RBP26.06■■□□□ 1.76
LINC01238-205ENST00000567549 ANKRD24Q8TF21 1146 aa26.06■■□□□ 1.76
LINC01238-205ENST00000567549 SPON1Q9HCB6 807 aa26.05■■□□□ 1.76
LINC01238-205ENST00000567549 TIMELESSQ9UNS1 1208 aa26.04■■□□□ 1.76
LINC01238-205ENST00000567549 PPP1R1BQ9UD71 204 aaPredicted RBP26.03■■□□□ 1.76
LINC01238-205ENST00000567549 ANKRD36BQ8N2N9 1353 aa26.03■■□□□ 1.76
LINC01238-205ENST00000567549 IP6K1Q92551 441 aa26.02■■□□□ 1.76
LINC01238-205ENST00000567549 USP47Q96K76 1375 aa26.01■■□□□ 1.75
LINC01238-205ENST00000567549 DCAF8L1A6NGE4 600 aa26■■□□□ 1.75
LINC01238-205ENST00000567549 KCNQ2O43526 872 aa25.99■■□□□ 1.75
LINC01238-205ENST00000567549 AMPHP49418 695 aa25.98■■□□□ 1.75
LINC01238-205ENST00000567549 STK32BQ9NY57 414 aa25.98■■□□□ 1.75
LINC01238-205ENST00000567549 NHSQ6T4R5 1651 aa25.98■■□□□ 1.75
LINC01238-205ENST00000567549 CLSPNQ9HAW4 1339 aa25.97■■□□□ 1.75
LINC01238-205ENST00000567549 RTL1A6NKG5 1358 aa25.95■■□□□ 1.75
LINC01238-205ENST00000567549 TXNRD1Q16881 649 aa25.95■■□□□ 1.74
LINC01238-205ENST00000567549 KAT6BQ8WYB5 2073 aa25.94■■□□□ 1.74
LINC01238-205ENST00000567549 SMG6Q86US8 1419 aaKnown RBP25.94■■□□□ 1.74
LINC01238-205ENST00000567549 MAP3K19Q56UN5 1328 aa25.91■■□□□ 1.74
LINC01238-205ENST00000567549 HOXC9P31274 260 aa25.91■■□□□ 1.74
LINC01238-205ENST00000567549 LTV1Q96GA3 475 aaPredicted RBP25.91■■□□□ 1.74
LINC01238-205ENST00000567549 PTF1AQ7RTS3 328 aa25.89■■□□□ 1.74
LINC01238-205ENST00000567549 SLC15A2Q16348 729 aa25.88■■□□□ 1.73
LINC01238-205ENST00000567549 PROM2Q8N271 834 aa25.88■■□□□ 1.73
LINC01238-205ENST00000567549 ACSBG1Q96GR2 724 aa25.88■■□□□ 1.73
LINC01238-205ENST00000567549 ANO8Q9HCE9 1232 aaPredicted RBP25.88■■□□□ 1.73
LINC01238-205ENST00000567549 CGNL1Q0VF96 1302 aa25.88■■□□□ 1.73
LINC01238-205ENST00000567549 KIF24Q5T7B8 1368 aa25.87■■□□□ 1.73
LINC01238-205ENST00000567549 CASZ1Q86V15 1759 aa25.87■■□□□ 1.73
LINC01238-205ENST00000567549 HMGB2P26583 209 aaKnown RBP25.86■■□□□ 1.73
LINC01238-205ENST00000567549 BTAF1O14981 1849 aa25.86■■□□□ 1.73
LINC01238-205ENST00000567549 KIF20BQ96Q89 1820 aa25.86■■□□□ 1.73
LINC01238-205ENST00000567549 FYB1O15117 783 aa25.85■■□□□ 1.73
LINC01238-205ENST00000567549 DDX54Q8TDD1 881 aaKnown RBP25.85■■□□□ 1.73
LINC01238-205ENST00000567549 SLC27A3Q5K4L6 730 aa25.83■■□□□ 1.73
LINC01238-205ENST00000567549 RAPGEF4Q8WZA2 1011 aa25.83■■□□□ 1.73
LINC01238-205ENST00000567549 GGNBP2Q9H3C7 697 aa25.83■■□□□ 1.73
LINC01238-205ENST00000567549 ZCRB1Q8TBF4 217 aaKnown RBP25.82■■□□□ 1.72
LINC01238-205ENST00000567549 MTFR1LQ9H019 292 aa25.81■■□□□ 1.72
LINC01238-205ENST00000567549 FLT4P35916 1363 aa25.81■■□□□ 1.72
LINC01238-205ENST00000567549 RRS1Q15050 365 aaKnown RBP25.79■■□□□ 1.72
LINC01238-205ENST00000567549 INSRP06213 1382 aa25.79■■□□□ 1.72
LINC01238-205ENST00000567549 ZBTB7AO95365 584 aa25.78■■□□□ 1.72
LINC01238-205ENST00000567549 SYTL4Q96C24 671 aaPredicted RBP25.78■■□□□ 1.72
LINC01238-205ENST00000567549 TATP17735 454 aaPredicted RBP25.77■■□□□ 1.72
LINC01238-205ENST00000567549 PCGF6Q9BYE7 350 aa25.77■■□□□ 1.72
LINC01238-205ENST00000567549 RGPD2P0DJD1 1756 aa25.75■■□□□ 1.71
LINC01238-205ENST00000567549 PAPPAQ13219 1627 aa25.74■■□□□ 1.71
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms