RNA–Protein interactions for RNA: ENST00000567250.5

SF3B3-208, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 3

Gene SF3B3, Length 1,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-208ENST00000567250 ARHGEF25Q86VW2 580 aa16.62■□□□□ 0.25
SF3B3-208ENST00000567250 UNC5CLQ8IV45 518 aa16.62■□□□□ 0.25
SF3B3-208ENST00000567250 BTG4Q9NY30 223 aa16.62■□□□□ 0.25
SF3B3-208ENST00000567250 TRPC5Q9UL62 973 aaPredicted RBP16.62■□□□□ 0.25
SF3B3-208ENST00000567250 KIF24Q5T7B8 1368 aa16.62■□□□□ 0.25
SF3B3-208ENST00000567250 WNK3Q9BYP7 1800 aa16.61■□□□□ 0.25
SF3B3-208ENST00000567250 ZNF316A6NFI3 1004 aaPredicted RBP16.6■□□□□ 0.25
SF3B3-208ENST00000567250 PEAK1Q9H792 1746 aa16.59■□□□□ 0.25
SF3B3-208ENST00000567250 PER1O15534 1290 aaPredicted RBP16.59■□□□□ 0.25
SF3B3-208ENST00000567250 AMER1Q5JTC6 1135 aaPredicted RBP16.59■□□□□ 0.25
SF3B3-208ENST00000567250 RGS17Q9UGC6 210 aaPredicted RBP16.59■□□□□ 0.25
SF3B3-208ENST00000567250 GLI3P10071 1580 aa16.59■□□□□ 0.25
SF3B3-208ENST00000567250 MORC1Q86VD1 984 aa16.58■□□□□ 0.24
SF3B3-208ENST00000567250 MAP3K19Q56UN5 1328 aa16.58■□□□□ 0.24
SF3B3-208ENST00000567250 FLT4P35916 1363 aa16.58■□□□□ 0.24
SF3B3-208ENST00000567250 SMG6Q86US8 1419 aaKnown RBP16.58■□□□□ 0.24
SF3B3-208ENST00000567250 CDK12Q9NYV4 1490 aaPredicted RBP16.58■□□□□ 0.24
SF3B3-208ENST00000567250 AMPHP49418 695 aa16.57■□□□□ 0.24
SF3B3-208ENST00000567250 VPS72Q15906 364 aa16.57■□□□□ 0.24
SF3B3-208ENST00000567250 QTRT2Q9H974 415 aaKnown RBP16.57■□□□□ 0.24
SF3B3-208ENST00000567250 CRB1P82279 1406 aa16.56■□□□□ 0.24
SF3B3-208ENST00000567250 EVA1CP58658 441 aa16.56■□□□□ 0.24
SF3B3-208ENST00000567250 RBM6P78332 1123 aaKnown RBP16.56■□□□□ 0.24
SF3B3-208ENST00000567250 STRN4Q9NRL3 753 aa16.56■□□□□ 0.24
SF3B3-208ENST00000567250 CCDC9Q9Y3X0 531 aaKnown RBP16.56■□□□□ 0.24
SF3B3-208ENST00000567250 WDR17Q8IZU2 1322 aa16.55■□□□□ 0.24
SF3B3-208ENST00000567250 CC2D1BQ5T0F9 858 aaKnown RBP16.55■□□□□ 0.24
SF3B3-208ENST00000567250 ERBB3P21860 1342 aa16.54■□□□□ 0.24
SF3B3-208ENST00000567250 RXRBP28702 533 aa16.54■□□□□ 0.24
SF3B3-208ENST00000567250 RRS1Q15050 365 aaKnown RBP16.54■□□□□ 0.24
SF3B3-208ENST00000567250 POTEAQ6S8J7 498 aa16.54■□□□□ 0.24
SF3B3-208ENST00000567250 IP6K1Q92551 441 aa16.54■□□□□ 0.24
SF3B3-208ENST00000567250 GJD4Q96KN9 370 aaPredicted RBP16.54■□□□□ 0.24
SF3B3-208ENST00000567250 CSB-PGBD3P0DP91 1061 aa16.53■□□□□ 0.24
SF3B3-208ENST00000567250 HOXC9P31274 260 aa16.53■□□□□ 0.24
SF3B3-208ENST00000567250 DDX10Q13206 875 aaKnown RBP16.53■□□□□ 0.24
SF3B3-208ENST00000567250 THSD7AQ9UPZ6 1657 aa16.53■□□□□ 0.24
SF3B3-208ENST00000567250 INSRP06213 1382 aa16.52■□□□□ 0.24
SF3B3-208ENST00000567250 SPATA31A5Q5VU36 1347 aa16.52■□□□□ 0.24
SF3B3-208ENST00000567250 SPATA31A7Q8IWB4 1347 aa16.52■□□□□ 0.24
SF3B3-208ENST00000567250 TNNT2P45379 298 aaPredicted RBP16.52■□□□□ 0.24
SF3B3-208ENST00000567250 PARP4Q9UKK3 1724 aaKnown RBP16.52■□□□□ 0.24
SF3B3-208ENST00000567250 RGPD2P0DJD1 1756 aa16.51■□□□□ 0.23
SF3B3-208ENST00000567250 SPATA31A1Q5TZJ5 1347 aa16.51■□□□□ 0.23
SF3B3-208ENST00000567250 TOM1L2Q6ZVM7 507 aa16.51■□□□□ 0.23
SF3B3-208ENST00000567250 AXIN2Q9Y2T1 843 aa16.51■□□□□ 0.23
SF3B3-208ENST00000567250 PPM1GO15355 546 aaPredicted RBP16.5■□□□□ 0.23
SF3B3-208ENST00000567250 FBLN1P23142 703 aa16.5■□□□□ 0.23
SF3B3-208ENST00000567250 ANKRD24Q8TF21 1146 aa16.5■□□□□ 0.23
SF3B3-208ENST00000567250 THRAP3Q9Y2W1 955 aaKnown RBP16.5■□□□□ 0.23
SF3B3-208ENST00000567250 EMILIN1Q9Y6C2 1016 aa16.5■□□□□ 0.23
SF3B3-208ENST00000567250 RGS12O14924 1447 aa16.5■□□□□ 0.23
SF3B3-208ENST00000567250 LARP1Q6PKG0 1096 aaKnown RBP16.49■□□□□ 0.23
SF3B3-208ENST00000567250 POLKQ9UBT6 870 aa16.49■□□□□ 0.23
SF3B3-208ENST00000567250 BRWD3Q6RI45 1802 aa16.48■□□□□ 0.23
SF3B3-208ENST00000567250 CNKSR2Q8WXI2 1034 aa16.48■□□□□ 0.23
SF3B3-208ENST00000567250 PARD3Q8TEW0 1356 aa16.48■□□□□ 0.23
SF3B3-208ENST00000567250 LRRC37A3O60309 1634 aa16.48■□□□□ 0.23
SF3B3-208ENST00000567250 CNGB1Q14028 1251 aaPredicted RBP16.47■□□□□ 0.23
SF3B3-208ENST00000567250 TCP11L2Q8N4U5 519 aa16.47■□□□□ 0.23
SF3B3-208ENST00000567250 A0A0G2JS52 829 aa16.46■□□□□ 0.23
SF3B3-208ENST00000567250 MYT1Q01538 1121 aa16.46■□□□□ 0.23
SF3B3-208ENST00000567250 MAPK8IP2Q13387 824 aaPredicted RBP16.46■□□□□ 0.23
SF3B3-208ENST00000567250 HSP90AB2PQ58FF8 381 aa16.46■□□□□ 0.23
SF3B3-208ENST00000567250 BARGINQ6ZT62 677 aa16.46■□□□□ 0.23
SF3B3-208ENST00000567250 LTV1Q96GA3 475 aaPredicted RBP16.46■□□□□ 0.23
SF3B3-208ENST00000567250 CARD10Q9BWT7 1032 aa16.46■□□□□ 0.23
SF3B3-208ENST00000567250 USP35Q9P2H5 1018 aa16.46■□□□□ 0.23
SF3B3-208ENST00000567250 NLRP2Q9NX02 1062 aa16.45■□□□□ 0.22
SF3B3-208ENST00000567250 RGPD1P0DJD0 1748 aa16.45■□□□□ 0.22
SF3B3-208ENST00000567250 RALBP1Q15311 655 aa16.44■□□□□ 0.22
SF3B3-208ENST00000567250 FAM98CQ17RN3 349 aaKnown RBP16.44■□□□□ 0.22
SF3B3-208ENST00000567250 CDCA7Q9BWT1 371 aaPredicted RBP16.44■□□□□ 0.22
SF3B3-208ENST00000567250 ONECUT3O60422 494 aaPredicted RBP16.42■□□□□ 0.22
SF3B3-208ENST00000567250 MTHFSP49914 203 aa16.42■□□□□ 0.22
SF3B3-208ENST00000567250 CFAP53Q96M91 514 aa16.42■□□□□ 0.22
SF3B3-208ENST00000567250 DISP2A7MBM2 1401 aa16.42■□□□□ 0.22
SF3B3-208ENST00000567250 NCAPD2Q15021 1401 aa16.42■□□□□ 0.22
SF3B3-208ENST00000567250 COL3A1P02461 1466 aaPredicted RBP16.41■□□□□ 0.22
SF3B3-208ENST00000567250 PKD1L3Q7Z443 1732 aa16.4■□□□□ 0.22
SF3B3-208ENST00000567250 TNS2Q63HR2 1409 aa16.4■□□□□ 0.22
SF3B3-208ENST00000567250 PPP2R1AP30153 589 aa16.4■□□□□ 0.22
SF3B3-208ENST00000567250 SEPT12Q8IYM1 358 aa16.4■□□□□ 0.22
SF3B3-208ENST00000567250 PLEKHG2Q9H7P9 1386 aa16.39■□□□□ 0.21
SF3B3-208ENST00000567250 IL2RBP14784 551 aa16.39■□□□□ 0.21
SF3B3-208ENST00000567250 EIF4A2Q14240 407 aaKnown RBP16.39■□□□□ 0.21
SF3B3-208ENST00000567250 ILDR2Q71H61 639 aa16.38■□□□□ 0.21
SF3B3-208ENST00000567250 SHANK3Q9BYB0 1731 aa16.38■□□□□ 0.21
SF3B3-208ENST00000567250 MYBBP1AQ9BQG0 1328 aaKnown RBP16.38■□□□□ 0.21
SF3B3-208ENST00000567250 MEGF6O75095 1541 aa16.37■□□□□ 0.21
SF3B3-208ENST00000567250 NBPF6Q5VWK0 638 aa16.37■□□□□ 0.21
SF3B3-208ENST00000567250 NBPF4Q96M43 638 aa16.37■□□□□ 0.21
SF3B3-208ENST00000567250 IGSF1Q8N6C5 1336 aa16.37■□□□□ 0.21
SF3B3-208ENST00000567250 OVOS2A0A0G2JMS6 1433 aa16.36■□□□□ 0.21
SF3B3-208ENST00000567250 DIAPH1O60610 1272 aaKnown RBP16.36■□□□□ 0.21
SF3B3-208ENST00000567250 DDB1Q16531 1140 aa16.36■□□□□ 0.21
SF3B3-208ENST00000567250 RAPGEF4Q8WZA2 1011 aa16.36■□□□□ 0.21
SF3B3-208ENST00000567250 PDE3BQ13370 1112 aa16.35■□□□□ 0.21
SF3B3-208ENST00000567250 KRT27Q7Z3Y8 459 aa16.35■□□□□ 0.21
SF3B3-208ENST00000567250 EYA1Q99502 592 aa16.35■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms