RNA–Protein interactions for RNA: ENST00000566126.5

CLK3-217, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 732 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-217ENST00000566126 USP19O94966 1318 aa24.9■■□□□ 1.58
CLK3-217ENST00000566126 NUDT16Q96DE0 195 aaKnown RBP24.9■■□□□ 1.58
CLK3-217ENST00000566126 AATKQ6ZMQ8 1374 aa24.88■■□□□ 1.57
CLK3-217ENST00000566126 POLR3AO14802 1390 aaPredicted RBP24.87■■□□□ 1.57
CLK3-217ENST00000566126 PAPPAQ13219 1627 aa24.86■■□□□ 1.57
CLK3-217ENST00000566126 TOPAZ1Q8N9V7 1692 aa24.85■■□□□ 1.57
CLK3-217ENST00000566126 ABTB2Q8N961 1025 aa24.85■■□□□ 1.57
CLK3-217ENST00000566126 GCP02774 474 aa24.84■■□□□ 1.57
CLK3-217ENST00000566126 MPHOSPH9Q99550 1183 aa24.84■■□□□ 1.57
CLK3-217ENST00000566126 ACEP12821 1306 aa24.84■■□□□ 1.57
CLK3-217ENST00000566126 PELP1Q8IZL8 1130 aaKnown RBP24.81■■□□□ 1.56
CLK3-217ENST00000566126 COL24A1Q17RW2 1714 aa24.79■■□□□ 1.56
CLK3-217ENST00000566126 ARHGEF28Q8N1W1 1705 aaKnown RBP24.78■■□□□ 1.56
CLK3-217ENST00000566126 COL18A1P39060 1754 aa24.78■■□□□ 1.56
CLK3-217ENST00000566126 HSPA6P17066 643 aa24.78■■□□□ 1.56
CLK3-217ENST00000566126 TOM1L2Q6ZVM7 507 aa24.78■■□□□ 1.56
CLK3-217ENST00000566126 NLRP13Q86W25 1043 aa24.77■■□□□ 1.56
CLK3-217ENST00000566126 KLHL34Q8N239 644 aa24.77■■□□□ 1.56
CLK3-217ENST00000566126 PLEKHG3A1L390 1219 aa24.76■■□□□ 1.55
CLK3-217ENST00000566126 ZNF827Q17R98 1081 aa24.76■■□□□ 1.55
CLK3-217ENST00000566126 ATP10DQ9P241 1426 aa24.76■■□□□ 1.55
CLK3-217ENST00000566126 NHSQ6T4R5 1651 aa24.75■■□□□ 1.55
CLK3-217ENST00000566126 ZBTB7CA1YPR0 619 aa24.75■■□□□ 1.55
CLK3-217ENST00000566126 NLGN2Q8NFZ4 835 aa24.75■■□□□ 1.55
CLK3-217ENST00000566126 CDK19Q9BWU1 502 aa24.75■■□□□ 1.55
CLK3-217ENST00000566126 CDCA7Q9BWT1 371 aaPredicted RBP24.74■■□□□ 1.55
CLK3-217ENST00000566126 CCDC61Q9Y6R9 512 aa24.74■■□□□ 1.55
CLK3-217ENST00000566126 YBX3P16989 372 aaKnown RBP eCLIP24.73■■□□□ 1.55
CLK3-217ENST00000566126 WDR17Q8IZU2 1322 aa24.72■■□□□ 1.55
CLK3-217ENST00000566126 AXIN2Q9Y2T1 843 aa24.71■■□□□ 1.55
CLK3-217ENST00000566126 QSER1Q2KHR3 1735 aa24.71■■□□□ 1.55
CLK3-217ENST00000566126 SLIT3O75094 1523 aa24.7■■□□□ 1.54
CLK3-217ENST00000566126 RGPD5Q99666 1765 aa24.69■■□□□ 1.54
CLK3-217ENST00000566126 GRIN3BO60391 1043 aa24.68■■□□□ 1.54
CLK3-217ENST00000566126 BTAF1O14981 1849 aa24.68■■□□□ 1.54
CLK3-217ENST00000566126 POLD1P28340 1107 aa24.67■■□□□ 1.54
CLK3-217ENST00000566126 SLC16A10Q8TF71 515 aa24.67■■□□□ 1.54
CLK3-217ENST00000566126 LRRC4BQ9NT99 713 aa24.67■■□□□ 1.54
CLK3-217ENST00000566126 EXOC5O00471 708 aa24.66■■□□□ 1.54
CLK3-217ENST00000566126 GPBP1L1Q9HC44 474 aaPredicted RBP24.66■■□□□ 1.54
CLK3-217ENST00000566126 AKT1S1Q96B36 256 aa24.65■■□□□ 1.54
CLK3-217ENST00000566126 ACSBG1Q96GR2 724 aa24.65■■□□□ 1.54
CLK3-217ENST00000566126 TNS2Q63HR2 1409 aa24.64■■□□□ 1.54
CLK3-217ENST00000566126 TUBGCP6Q96RT7 1819 aa24.64■■□□□ 1.54
CLK3-217ENST00000566126 CARD10Q9BWT7 1032 aa24.64■■□□□ 1.54
CLK3-217ENST00000566126 ADCY9O60503 1353 aa24.63■■□□□ 1.53
CLK3-217ENST00000566126 PNPLA7Q6ZV29 1317 aa24.61■■□□□ 1.53
CLK3-217ENST00000566126 NLRP6P59044 892 aa24.61■■□□□ 1.53
CLK3-217ENST00000566126 KDM2AQ9Y2K7 1162 aa24.61■■□□□ 1.53
CLK3-217ENST00000566126 TRPM1Q7Z4N2 1603 aa24.61■■□□□ 1.53
CLK3-217ENST00000566126 USP6P35125 1406 aa24.61■■□□□ 1.53
CLK3-217ENST00000566126 CPSF1Q10570 1443 aaKnown RBP24.61■■□□□ 1.53
CLK3-217ENST00000566126 BRD4O60885 1362 aaPredicted RBP24.6■■□□□ 1.53
CLK3-217ENST00000566126 PPIP5K1Q6PFW1 1433 aa24.59■■□□□ 1.53
CLK3-217ENST00000566126 ABCC6O95255 1503 aa24.58■■□□□ 1.53
CLK3-217ENST00000566126 ZNF526Q8TF50 670 aaPredicted RBP24.58■■□□□ 1.53
CLK3-217ENST00000566126 PIK3C2AO00443 1686 aa24.58■■□□□ 1.53
CLK3-217ENST00000566126 KAT6BQ8WYB5 2073 aa24.58■■□□□ 1.53
CLK3-217ENST00000566126 CSB-PGBD3P0DP91 1061 aa24.55■■□□□ 1.52
CLK3-217ENST00000566126 ARHGEF25Q86VW2 580 aa24.55■■□□□ 1.52
CLK3-217ENST00000566126 DCAF11Q8TEB1 546 aa24.55■■□□□ 1.52
CLK3-217ENST00000566126 CCDC7Q96M83 1385 aa24.54■■□□□ 1.52
CLK3-217ENST00000566126 DNAJC5GQ8N7S2 189 aa24.53■■□□□ 1.52
CLK3-217ENST00000566126 KIF3CO14782 793 aa24.51■■□□□ 1.51
CLK3-217ENST00000566126 TFCP2L1Q9NZI6 479 aa24.5■■□□□ 1.51
CLK3-217ENST00000566126 APLP1P51693 650 aa24.49■■□□□ 1.51
CLK3-217ENST00000566126 SLC27A3Q5K4L6 730 aa24.49■■□□□ 1.51
CLK3-217ENST00000566126 SRPK2P78362 688 aaKnown RBP24.48■■□□□ 1.51
CLK3-217ENST00000566126 CAPN15O75808 1086 aa24.47■■□□□ 1.51
CLK3-217ENST00000566126 COL13A1Q5TAT6 717 aaPredicted RBP24.47■■□□□ 1.51
CLK3-217ENST00000566126 CABP2Q9NPB3 220 aa24.47■■□□□ 1.51
CLK3-217ENST00000566126 KCNQ4P56696 695 aa24.46■■□□□ 1.51
CLK3-217ENST00000566126 QRICH2Q9H0J4 1663 aa24.45■■□□□ 1.5
CLK3-217ENST00000566126 NFAT5O94916 1531 aa24.45■■□□□ 1.5
CLK3-217ENST00000566126 STAC3Q96MF2 364 aa24.44■■□□□ 1.5
CLK3-217ENST00000566126 CABP1Q9NZU7 370 aa24.44■■□□□ 1.5
CLK3-217ENST00000566126 SOX12O15370 315 aa24.43■■□□□ 1.5
CLK3-217ENST00000566126 KCNH5Q8NCM2 988 aa24.43■■□□□ 1.5
CLK3-217ENST00000566126 LY75O60449 1722 aa24.42■■□□□ 1.5
CLK3-217ENST00000566126 IL2RBP14784 551 aa24.4■■□□□ 1.5
CLK3-217ENST00000566126 CD2APQ9Y5K6 639 aa24.4■■□□□ 1.5
CLK3-217ENST00000566126 COL23A1Q86Y22 540 aaPredicted RBP24.39■■□□□ 1.49
CLK3-217ENST00000566126 MSL1Q68DK7 614 aa24.38■■□□□ 1.49
CLK3-217ENST00000566126 PRELPP51888 382 aa24.37■■□□□ 1.49
CLK3-217ENST00000566126 WDR90Q96KV7 1748 aa24.37■■□□□ 1.49
CLK3-217ENST00000566126 NLRP2Q9NX02 1062 aa24.36■■□□□ 1.49
CLK3-217ENST00000566126 ERBB3P21860 1342 aa24.35■■□□□ 1.49
CLK3-217ENST00000566126 TTC21BQ7Z4L5 1316 aa24.35■■□□□ 1.49
CLK3-217ENST00000566126 KIAA1210Q9ULL0 1709 aa24.35■■□□□ 1.49
CLK3-217ENST00000566126 MSH5O43196 834 aa24.35■■□□□ 1.49
CLK3-217ENST00000566126 PCNTO95613 3336 aa24.35■■□□□ 1.49
CLK3-217ENST00000566126 TOMM70O94826 608 aa24.32■■□□□ 1.48
CLK3-217ENST00000566126 TNS4Q8IZW8 715 aa24.32■■□□□ 1.48
CLK3-217ENST00000566126 DOT1LQ8TEK3 1739 aa24.32■■□□□ 1.48
CLK3-217ENST00000566126 CENPJQ9HC77 1338 aaPredicted RBP24.32■■□□□ 1.48
CLK3-217ENST00000566126 JMYQ8N9B5 988 aa24.31■■□□□ 1.48
CLK3-217ENST00000566126 NSD2O96028 1365 aa24.3■■□□□ 1.48
CLK3-217ENST00000566126 NBPF1Q3BBV0 1214 aa24.3■■□□□ 1.48
CLK3-217ENST00000566126 WWC3Q9ULE0 1092 aa24.3■■□□□ 1.48
CLK3-217ENST00000566126 CCNL1Q9UK58 526 aaPredicted RBP24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms