RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 TMC1Q8TDI8 760 aa21.05■□□□□ 0.96
CLN3-222ENST00000566083 TNS1Q9HBL0 1735 aaKnown RBP21.05■□□□□ 0.96
CLN3-222ENST00000566083 PARP4Q9UKK3 1724 aaKnown RBP21.05■□□□□ 0.96
CLN3-222ENST00000566083 USP31Q70CQ4 1352 aa21.05■□□□□ 0.96
CLN3-222ENST00000566083 AXIN2Q9Y2T1 843 aa21.04■□□□□ 0.96
CLN3-222ENST00000566083 ABCC6O95255 1503 aa21.04■□□□□ 0.96
CLN3-222ENST00000566083 CSB-PGBD3P0DP91 1061 aa21.04■□□□□ 0.96
CLN3-222ENST00000566083 CARD10Q9BWT7 1032 aa21.04■□□□□ 0.96
CLN3-222ENST00000566083 OVOS2A0A0G2JMS6 1433 aa21.03■□□□□ 0.96
CLN3-222ENST00000566083 OVOS2A0A0J9YW53 1432 aa21.03■□□□□ 0.96
CLN3-222ENST00000566083 OVOS2Q6IE36 1432 aa21.03■□□□□ 0.96
CLN3-222ENST00000566083 COL18A1P39060 1754 aa21.03■□□□□ 0.96
CLN3-222ENST00000566083 PSDA5PKW4 1024 aaPredicted RBP21.03■□□□□ 0.96
CLN3-222ENST00000566083 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.03■□□□□ 0.96
CLN3-222ENST00000566083 NINLQ9Y2I6 1382 aa21.02■□□□□ 0.96
CLN3-222ENST00000566083 SOX12O15370 315 aa21.02■□□□□ 0.96
CLN3-222ENST00000566083 NBPF14Q5TI25 921 aa21.02■□□□□ 0.96
CLN3-222ENST00000566083 MON2Q7Z3U7 1717 aa21.01■□□□□ 0.95
CLN3-222ENST00000566083 SLC12A5Q9H2X9 1139 aa21.01■□□□□ 0.95
CLN3-222ENST00000566083 CCDC7Q96M83 1385 aa21.01■□□□□ 0.95
CLN3-222ENST00000566083 EDC4Q6P2E9 1401 aaKnown RBP21.01■□□□□ 0.95
CLN3-222ENST00000566083 LRP5O75197 1615 aa21■□□□□ 0.95
CLN3-222ENST00000566083 R3HDM1Q15032 1099 aaKnown RBP21■□□□□ 0.95
CLN3-222ENST00000566083 NFAT5O94916 1531 aa20.99■□□□□ 0.95
CLN3-222ENST00000566083 CD163L1Q9NR16 1453 aa20.98■□□□□ 0.95
CLN3-222ENST00000566083 NME9Q86XW9 330 aa20.97■□□□□ 0.95
CLN3-222ENST00000566083 BCL9O00512 1426 aa20.97■□□□□ 0.95
CLN3-222ENST00000566083 ST20-MTHFSA0A0A6YYL1 179 aa20.96■□□□□ 0.95
CLN3-222ENST00000566083 EXOC5O00471 708 aa20.96■□□□□ 0.95
CLN3-222ENST00000566083 PLSCR1O15162 318 aa20.96■□□□□ 0.95
CLN3-222ENST00000566083 TESK2Q96S53 571 aa20.96■□□□□ 0.95
CLN3-222ENST00000566083 BCL11BQ9C0K0 894 aaPredicted RBP20.96■□□□□ 0.95
CLN3-222ENST00000566083 USP54Q70EL1 1684 aa20.96■□□□□ 0.95
CLN3-222ENST00000566083 A0A1W2PP64 1363 aa20.95■□□□□ 0.94
CLN3-222ENST00000566083 LRRC37A3O60309 1634 aa20.94■□□□□ 0.94
CLN3-222ENST00000566083 ERBB3P21860 1342 aa20.93■□□□□ 0.94
CLN3-222ENST00000566083 TIMELESSQ9UNS1 1208 aa20.93■□□□□ 0.94
CLN3-222ENST00000566083 MARCH10Q8NA82 808 aaPredicted RBP20.92■□□□□ 0.94
CLN3-222ENST00000566083 PEAK1Q9H792 1746 aa20.92■□□□□ 0.94
CLN3-222ENST00000566083 RGPD5Q99666 1765 aa20.91■□□□□ 0.94
CLN3-222ENST00000566083 TMF1P82094 1093 aa20.91■□□□□ 0.94
CLN3-222ENST00000566083 CDCA8Q53HL2 280 aa20.91■□□□□ 0.94
CLN3-222ENST00000566083 NLRP2Q9NX02 1062 aa20.91■□□□□ 0.94
CLN3-222ENST00000566083 RREB1Q92766 1687 aa20.9■□□□□ 0.94
CLN3-222ENST00000566083 COG3Q96JB2 828 aa20.9■□□□□ 0.94
CLN3-222ENST00000566083 WNK3Q9BYP7 1800 aa20.9■□□□□ 0.94
CLN3-222ENST00000566083 IL2RBP14784 551 aa20.88■□□□□ 0.93
CLN3-222ENST00000566083 ANKRD24Q8TF21 1146 aa20.88■□□□□ 0.93
CLN3-222ENST00000566083 RGPD3A6NKT7 1758 aaPredicted RBP20.88■□□□□ 0.93
CLN3-222ENST00000566083 RGPD4Q7Z3J3 1758 aa20.88■□□□□ 0.93
CLN3-222ENST00000566083 IP6K1Q92551 441 aa20.87■□□□□ 0.93
CLN3-222ENST00000566083 SBF2Q86WG5 1849 aa20.87■□□□□ 0.93
CLN3-222ENST00000566083 TNS2Q63HR2 1409 aa20.87■□□□□ 0.93
CLN3-222ENST00000566083 CLSPNQ9HAW4 1339 aa20.87■□□□□ 0.93
CLN3-222ENST00000566083 ANKRD36BQ8N2N9 1353 aa20.87■□□□□ 0.93
CLN3-222ENST00000566083 NUP188Q5SRE5 1749 aa20.86■□□□□ 0.93
CLN3-222ENST00000566083 USP47Q96K76 1375 aa20.86■□□□□ 0.93
CLN3-222ENST00000566083 LTN1O94822 1766 aa20.86■□□□□ 0.93
CLN3-222ENST00000566083 SPON1Q9HCB6 807 aa20.82■□□□□ 0.92
CLN3-222ENST00000566083 AMPHP49418 695 aa20.81■□□□□ 0.92
CLN3-222ENST00000566083 KCNQ2O43526 872 aa20.79■□□□□ 0.92
CLN3-222ENST00000566083 TXNRD1Q16881 649 aa20.78■□□□□ 0.92
CLN3-222ENST00000566083 PTF1AQ7RTS3 328 aa20.78■□□□□ 0.92
CLN3-222ENST00000566083 MAP3K19Q56UN5 1328 aa20.78■□□□□ 0.92
CLN3-222ENST00000566083 FAM208AQ9UK61 1670 aaKnown RBP20.78■□□□□ 0.92
CLN3-222ENST00000566083 HOXC9P31274 260 aa20.78■□□□□ 0.92
CLN3-222ENST00000566083 PROM2Q8N271 834 aa20.78■□□□□ 0.92
CLN3-222ENST00000566083 RTL1A6NKG5 1358 aa20.77■□□□□ 0.92
CLN3-222ENST00000566083 FYB1O15117 783 aa20.77■□□□□ 0.91
CLN3-222ENST00000566083 STK32BQ9NY57 414 aa20.77■□□□□ 0.91
CLN3-222ENST00000566083 PPP1R1BQ9UD71 204 aaPredicted RBP20.77■□□□□ 0.91
CLN3-222ENST00000566083 KAT6BQ8WYB5 2073 aa20.76■□□□□ 0.91
CLN3-222ENST00000566083 LTV1Q96GA3 475 aaPredicted RBP20.76■□□□□ 0.91
CLN3-222ENST00000566083 ACSBG1Q96GR2 724 aa20.73■□□□□ 0.91
CLN3-222ENST00000566083 GGNBP2Q9H3C7 697 aa20.73■□□□□ 0.91
CLN3-222ENST00000566083 ANO8Q9HCE9 1232 aaPredicted RBP20.73■□□□□ 0.91
CLN3-222ENST00000566083 SMG6Q86US8 1419 aaKnown RBP20.73■□□□□ 0.91
CLN3-222ENST00000566083 KIF24Q5T7B8 1368 aa20.73■□□□□ 0.91
CLN3-222ENST00000566083 NHSQ6T4R5 1651 aa20.72■□□□□ 0.91
CLN3-222ENST00000566083 CGNL1Q0VF96 1302 aa20.72■□□□□ 0.91
CLN3-222ENST00000566083 SLC15A2Q16348 729 aa20.72■□□□□ 0.91
CLN3-222ENST00000566083 DCAF8L1A6NGE4 600 aa20.71■□□□□ 0.91
CLN3-222ENST00000566083 PCGF6Q9BYE7 350 aa20.71■□□□□ 0.91
CLN3-222ENST00000566083 DDX54Q8TDD1 881 aaKnown RBP20.7■□□□□ 0.9
CLN3-222ENST00000566083 ZCRB1Q8TBF4 217 aaKnown RBP20.7■□□□□ 0.9
CLN3-222ENST00000566083 RRS1Q15050 365 aaKnown RBP20.69■□□□□ 0.9
CLN3-222ENST00000566083 FBLN1P23142 703 aa20.68■□□□□ 0.9
CLN3-222ENST00000566083 SLC27A3Q5K4L6 730 aa20.68■□□□□ 0.9
CLN3-222ENST00000566083 RAPGEF4Q8WZA2 1011 aa20.67■□□□□ 0.9
CLN3-222ENST00000566083 INSRP06213 1382 aa20.67■□□□□ 0.9
CLN3-222ENST00000566083 FLT4P35916 1363 aa20.67■□□□□ 0.9
CLN3-222ENST00000566083 HMGB2P26583 209 aaKnown RBP20.66■□□□□ 0.9
CLN3-222ENST00000566083 NBPF6Q5VWK0 638 aa20.65■□□□□ 0.9
CLN3-222ENST00000566083 NBPF4Q96M43 638 aa20.65■□□□□ 0.9
CLN3-222ENST00000566083 MTFR1LQ9H019 292 aa20.65■□□□□ 0.9
CLN3-222ENST00000566083 CASZ1Q86V15 1759 aa20.64■□□□□ 0.89
CLN3-222ENST00000566083 BTAF1O14981 1849 aa20.63■□□□□ 0.89
CLN3-222ENST00000566083 ZBTB7AO95365 584 aa20.63■□□□□ 0.89
CLN3-222ENST00000566083 TATP17735 454 aaPredicted RBP20.63■□□□□ 0.89
CLN3-222ENST00000566083 CARD14Q9BXL6 1004 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms