RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 CDCA8Q53HL2 280 aa13.75□□□□□ -0.21
CLN3-220ENST00000566040 TRPC5Q9UL62 973 aaPredicted RBP13.75□□□□□ -0.21
CLN3-220ENST00000566040 SPATA31A5Q5VU36 1347 aa13.74□□□□□ -0.21
CLN3-220ENST00000566040 SPATA31A7Q8IWB4 1347 aa13.74□□□□□ -0.21
CLN3-220ENST00000566040 RBM6P78332 1123 aaKnown RBP13.74□□□□□ -0.21
CLN3-220ENST00000566040 GJD4Q96KN9 370 aaPredicted RBP13.74□□□□□ -0.21
CLN3-220ENST00000566040 TNS1Q9HBL0 1735 aaKnown RBP13.73□□□□□ -0.21
CLN3-220ENST00000566040 HAP1P54257 671 aaPredicted RBP13.73□□□□□ -0.21
CLN3-220ENST00000566040 SBF2Q86WG5 1849 aa13.73□□□□□ -0.21
CLN3-220ENST00000566040 RXRBP28702 533 aa13.72□□□□□ -0.21
CLN3-220ENST00000566040 GGNBP2Q9H3C7 697 aa13.72□□□□□ -0.21
CLN3-220ENST00000566040 DISP2A7MBM2 1401 aa13.72□□□□□ -0.21
CLN3-220ENST00000566040 SPATA31A1Q5TZJ5 1347 aa13.71□□□□□ -0.21
CLN3-220ENST00000566040 SOCS7O14512 581 aa13.71□□□□□ -0.21
CLN3-220ENST00000566040 ONECUT3O60422 494 aaPredicted RBP13.71□□□□□ -0.21
CLN3-220ENST00000566040 RGPD1P0DJD0 1748 aa13.7□□□□□ -0.22
CLN3-220ENST00000566040 MAP3K19Q56UN5 1328 aa13.7□□□□□ -0.22
CLN3-220ENST00000566040 SOX12O15370 315 aa13.7□□□□□ -0.22
CLN3-220ENST00000566040 PER1O15534 1290 aaPredicted RBP13.7□□□□□ -0.22
CLN3-220ENST00000566040 LARP1Q6PKG0 1096 aaKnown RBP13.7□□□□□ -0.22
CLN3-220ENST00000566040 PANK3Q9H999 370 aa13.7□□□□□ -0.22
CLN3-220ENST00000566040 CRB1P82279 1406 aa13.7□□□□□ -0.22
CLN3-220ENST00000566040 SMG6Q86US8 1419 aaKnown RBP13.7□□□□□ -0.22
CLN3-220ENST00000566040 KCNH5Q8NCM2 988 aa13.69□□□□□ -0.22
CLN3-220ENST00000566040 BLMP54132 1417 aaPredicted RBP13.68□□□□□ -0.22
CLN3-220ENST00000566040 POLR3GLQ9BT43 218 aa13.68□□□□□ -0.22
CLN3-220ENST00000566040 WDR17Q8IZU2 1322 aa13.67□□□□□ -0.22
CLN3-220ENST00000566040 NCAPD2Q15021 1401 aa13.67□□□□□ -0.22
CLN3-220ENST00000566040 AMER1Q5JTC6 1135 aaPredicted RBP13.67□□□□□ -0.22
CLN3-220ENST00000566040 RTL1A6NKG5 1358 aa13.67□□□□□ -0.22
CLN3-220ENST00000566040 ERBB3P21860 1342 aa13.66□□□□□ -0.22
CLN3-220ENST00000566040 STRN4Q9NRL3 753 aa13.66□□□□□ -0.22
CLN3-220ENST00000566040 PKD1L3Q7Z443 1732 aa13.66□□□□□ -0.22
CLN3-220ENST00000566040 RRS1Q15050 365 aaKnown RBP13.65□□□□□ -0.22
CLN3-220ENST00000566040 FAM98CQ17RN3 349 aaKnown RBP13.65□□□□□ -0.22
CLN3-220ENST00000566040 COG3Q96JB2 828 aa13.65□□□□□ -0.22
CLN3-220ENST00000566040 NSD2O96028 1365 aa13.64□□□□□ -0.23
CLN3-220ENST00000566040 ZBTB7CA1YPR0 619 aa13.64□□□□□ -0.23
CLN3-220ENST00000566040 HOXC9P31274 260 aa13.64□□□□□ -0.23
CLN3-220ENST00000566040 SEPT12Q8IYM1 358 aa13.64□□□□□ -0.23
CLN3-220ENST00000566040 CGNL1Q0VF96 1302 aa13.64□□□□□ -0.23
CLN3-220ENST00000566040 BARGINQ6ZT62 677 aa13.63□□□□□ -0.23
CLN3-220ENST00000566040 IP6K1Q92551 441 aa13.63□□□□□ -0.23
CLN3-220ENST00000566040 EMILIN1Q9Y6C2 1016 aa13.63□□□□□ -0.23
CLN3-220ENST00000566040 COL3A1P02461 1466 aaPredicted RBP13.62□□□□□ -0.23
CLN3-220ENST00000566040 TOGARAM1Q9Y4F4 1720 aa13.62□□□□□ -0.23
CLN3-220ENST00000566040 MEGF6O75095 1541 aa13.62□□□□□ -0.23
CLN3-220ENST00000566040 INSRP06213 1382 aa13.61□□□□□ -0.23
CLN3-220ENST00000566040 FLT4P35916 1363 aa13.61□□□□□ -0.23
CLN3-220ENST00000566040 KIF24Q5T7B8 1368 aa13.61□□□□□ -0.23
CLN3-220ENST00000566040 NPC1L1Q9UHC9 1359 aa13.61□□□□□ -0.23
CLN3-220ENST00000566040 UPF1Q92900 1129 aaKnown RBP eCLIP13.61□□□□□ -0.23
CLN3-220ENST00000566040 RREB1Q92766 1687 aa13.6□□□□□ -0.23
CLN3-220ENST00000566040 TNS2Q63HR2 1409 aa13.6□□□□□ -0.23
CLN3-220ENST00000566040 DOT1LQ8TEK3 1739 aa13.6□□□□□ -0.23
CLN3-220ENST00000566040 ANKRD24Q8TF21 1146 aa13.6□□□□□ -0.23
CLN3-220ENST00000566040 CARD10Q9BWT7 1032 aa13.6□□□□□ -0.23
CLN3-220ENST00000566040 POLKQ9UBT6 870 aa13.6□□□□□ -0.23
CLN3-220ENST00000566040 CCDC9Q9Y3X0 531 aaKnown RBP13.6□□□□□ -0.23
CLN3-220ENST00000566040 VIRMAQ69YN4 1812 aaKnown RBP13.6□□□□□ -0.23
CLN3-220ENST00000566040 NHSQ6T4R5 1651 aa13.59□□□□□ -0.23
CLN3-220ENST00000566040 HSP90AB2PQ58FF8 381 aa13.59□□□□□ -0.23
CLN3-220ENST00000566040 TCP11L2Q8N4U5 519 aa13.59□□□□□ -0.23
CLN3-220ENST00000566040 USP35Q9P2H5 1018 aa13.59□□□□□ -0.23
CLN3-220ENST00000566040 RGPD3A6NKT7 1758 aaPredicted RBP13.58□□□□□ -0.23
CLN3-220ENST00000566040 RGPD4Q7Z3J3 1758 aa13.58□□□□□ -0.23
CLN3-220ENST00000566040 FAM182BQ5T319 152 aa13.58□□□□□ -0.24
CLN3-220ENST00000566040 THRAP3Q9Y2W1 955 aaKnown RBP13.57□□□□□ -0.24
CLN3-220ENST00000566040 NUP188Q5SRE5 1749 aa13.56□□□□□ -0.24
CLN3-220ENST00000566040 BTAF1O14981 1849 aa13.56□□□□□ -0.24
CLN3-220ENST00000566040 EVA1CP58658 441 aa13.56□□□□□ -0.24
CLN3-220ENST00000566040 TOM1L2Q6ZVM7 507 aa13.56□□□□□ -0.24
CLN3-220ENST00000566040 OVOS2A0A0G2JMS6 1433 aa13.56□□□□□ -0.24
CLN3-220ENST00000566040 ITGB4P16144 1822 aa13.55□□□□□ -0.24
CLN3-220ENST00000566040 NBPF6Q5VWK0 638 aa13.55□□□□□ -0.24
CLN3-220ENST00000566040 KRT27Q7Z3Y8 459 aa13.55□□□□□ -0.24
CLN3-220ENST00000566040 NBPF4Q96M43 638 aa13.55□□□□□ -0.24
CLN3-220ENST00000566040 TNNT2P45379 298 aaPredicted RBP13.54□□□□□ -0.24
CLN3-220ENST00000566040 KNSTRNQ9Y448 316 aa13.54□□□□□ -0.24
CLN3-220ENST00000566040 BCL9O00512 1426 aa13.54□□□□□ -0.24
CLN3-220ENST00000566040 AMPHP49418 695 aa13.53□□□□□ -0.24
CLN3-220ENST00000566040 USHBP1Q8N6Y0 703 aa13.53□□□□□ -0.24
CLN3-220ENST00000566040 MARCH10Q8NA82 808 aaPredicted RBP13.53□□□□□ -0.24
CLN3-220ENST00000566040 LTV1Q96GA3 475 aaPredicted RBP13.53□□□□□ -0.24
CLN3-220ENST00000566040 EIF4A2Q14240 407 aaKnown RBP13.52□□□□□ -0.25
CLN3-220ENST00000566040 PARD3Q8TEW0 1356 aa13.51□□□□□ -0.25
CLN3-220ENST00000566040 CSB-PGBD3P0DP91 1061 aa13.51□□□□□ -0.25
CLN3-220ENST00000566040 CC2D1BQ5T0F9 858 aaKnown RBP13.51□□□□□ -0.25
CLN3-220ENST00000566040 PTF1AQ7RTS3 328 aa13.51□□□□□ -0.25
CLN3-220ENST00000566040 NLRP2Q9NX02 1062 aa13.51□□□□□ -0.25
CLN3-220ENST00000566040 LY75O60449 1722 aa13.5□□□□□ -0.25
CLN3-220ENST00000566040 ADAMTS7Q9UKP4 1686 aa13.5□□□□□ -0.25
CLN3-220ENST00000566040 IGSF1Q8N6C5 1336 aa13.5□□□□□ -0.25
CLN3-220ENST00000566040 ZEB1P37275 1124 aaPredicted RBP13.5□□□□□ -0.25
CLN3-220ENST00000566040 MORC1Q86VD1 984 aa13.5□□□□□ -0.25
CLN3-220ENST00000566040 EYA1Q99502 592 aa13.49□□□□□ -0.25
CLN3-220ENST00000566040 PAPPAQ13219 1627 aa13.49□□□□□ -0.25
CLN3-220ENST00000566040 SCN11AQ9UI33 1791 aa13.48□□□□□ -0.25
CLN3-220ENST00000566040 KDRP35968 1356 aa13.48□□□□□ -0.25
CLN3-220ENST00000566040 A0A0G2JS52 829 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms