RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 CRB1P82279 1406 aa29.06■■■□□ 2.24
CLN3-219ENST00000565778 CCER1Q8TC90 406 aaPredicted RBP29.06■■■□□ 2.24
CLN3-219ENST00000565778 A0A1W2PP64 1363 aa29.05■■■□□ 2.24
CLN3-219ENST00000565778 USP31Q70CQ4 1352 aa29.05■■■□□ 2.24
CLN3-219ENST00000565778 CSB-PGBD3P0DP91 1061 aa29.05■■■□□ 2.24
CLN3-219ENST00000565778 EDC4Q6P2E9 1401 aaKnown RBP29.04■■■□□ 2.24
CLN3-219ENST00000565778 MON2Q7Z3U7 1717 aa29.03■■■□□ 2.24
CLN3-219ENST00000565778 NINLQ9Y2I6 1382 aa29.02■■■□□ 2.24
CLN3-219ENST00000565778 WDR17Q8IZU2 1322 aa29.02■■■□□ 2.24
CLN3-219ENST00000565778 TRIM37O94972 964 aa29■■■□□ 2.23
CLN3-219ENST00000565778 EN1Q05925 392 aaPredicted RBP28.99■■■□□ 2.23
CLN3-219ENST00000565778 CDCA8Q53HL2 280 aa28.99■■■□□ 2.23
CLN3-219ENST00000565778 COL18A1P39060 1754 aa28.98■■■□□ 2.23
CLN3-219ENST00000565778 NFAT5O94916 1531 aa28.96■■■□□ 2.23
CLN3-219ENST00000565778 CARD10Q9BWT7 1032 aa28.96■■■□□ 2.23
CLN3-219ENST00000565778 DDB1Q16531 1140 aa28.95■■■□□ 2.22
CLN3-219ENST00000565778 APBA3O96018 575 aa28.94■■■□□ 2.22
CLN3-219ENST00000565778 COG3Q96JB2 828 aa28.94■■■□□ 2.22
CLN3-219ENST00000565778 CDCA7Q9BWT1 371 aaPredicted RBP28.93■■■□□ 2.22
CLN3-219ENST00000565778 ANKRD36BQ8N2N9 1353 aa28.91■■■□□ 2.22
CLN3-219ENST00000565778 C11orf95C9JLR9 678 aaPredicted RBP28.9■■■□□ 2.22
CLN3-219ENST00000565778 NLRP2Q9NX02 1062 aa28.9■■■□□ 2.22
CLN3-219ENST00000565778 EZH2Q15910 746 aaKnown RBP28.89■■■□□ 2.22
CLN3-219ENST00000565778 RGPD5Q99666 1765 aa28.88■■■□□ 2.21
CLN3-219ENST00000565778 ANKRD24Q8TF21 1146 aa28.88■■■□□ 2.21
CLN3-219ENST00000565778 RGPD1P0DJD0 1748 aa28.88■■■□□ 2.21
CLN3-219ENST00000565778 OVOS2A0A0J9YW53 1432 aa28.87■■■□□ 2.21
CLN3-219ENST00000565778 OVOS2Q6IE36 1432 aa28.87■■■□□ 2.21
CLN3-219ENST00000565778 EXOC5O00471 708 aa28.87■■■□□ 2.21
CLN3-219ENST00000565778 ERBB3P21860 1342 aa28.86■■■□□ 2.21
CLN3-219ENST00000565778 CCDC7Q96M83 1385 aa28.86■■■□□ 2.21
CLN3-219ENST00000565778 FYB1O15117 783 aa28.85■■■□□ 2.21
CLN3-219ENST00000565778 IP6K1Q92551 441 aa28.85■■■□□ 2.21
CLN3-219ENST00000565778 CAMKK2Q96RR4 588 aa28.85■■■□□ 2.21
CLN3-219ENST00000565778 USP54Q70EL1 1684 aa28.85■■■□□ 2.21
CLN3-219ENST00000565778 PARP4Q9UKK3 1724 aaKnown RBP28.84■■■□□ 2.21
CLN3-219ENST00000565778 FBLN1P23142 703 aa28.84■■■□□ 2.21
CLN3-219ENST00000565778 GGNBP2Q9H3C7 697 aa28.84■■■□□ 2.21
CLN3-219ENST00000565778 ABCC6O95255 1503 aa28.84■■■□□ 2.21
CLN3-219ENST00000565778 MARCH10Q8NA82 808 aaPredicted RBP28.83■■■□□ 2.21
CLN3-219ENST00000565778 DISP2A7MBM2 1401 aa28.83■■■□□ 2.21
CLN3-219ENST00000565778 PSDA5PKW4 1024 aaPredicted RBP28.82■■■□□ 2.2
CLN3-219ENST00000565778 AMPHP49418 695 aa28.82■■■□□ 2.2
CLN3-219ENST00000565778 LTV1Q96GA3 475 aaPredicted RBP28.82■■■□□ 2.2
CLN3-219ENST00000565778 OVOS2A0A0G2JMS6 1433 aa28.81■■■□□ 2.2
CLN3-219ENST00000565778 POLR3GLQ9BT43 218 aa28.81■■■□□ 2.2
CLN3-219ENST00000565778 EIF4G2P78344 907 aaKnown RBP eCLIP28.8■■■□□ 2.2
CLN3-219ENST00000565778 MAP3K19Q56UN5 1328 aa28.79■■■□□ 2.2
CLN3-219ENST00000565778 LTN1O94822 1766 aa28.78■■■□□ 2.2
CLN3-219ENST00000565778 TNS1Q9HBL0 1735 aaKnown RBP28.77■■■□□ 2.2
CLN3-219ENST00000565778 IL2RBP14784 551 aa28.77■■■□□ 2.2
CLN3-219ENST00000565778 CARD14Q9BXL6 1004 aa28.77■■■□□ 2.2
CLN3-219ENST00000565778 HSPA5P11021 654 aaKnown RBP28.76■■■□□ 2.19
CLN3-219ENST00000565778 HOXC9P31274 260 aa28.76■■■□□ 2.19
CLN3-219ENST00000565778 R3HDM1Q15032 1099 aaKnown RBP28.75■■■□□ 2.19
CLN3-219ENST00000565778 LRRC37A3O60309 1634 aa28.75■■■□□ 2.19
CLN3-219ENST00000565778 PARD3Q8TEW0 1356 aa28.75■■■□□ 2.19
CLN3-219ENST00000565778 RRS1Q15050 365 aaKnown RBP28.74■■■□□ 2.19
CLN3-219ENST00000565778 BCL11BQ9C0K0 894 aaPredicted RBP28.74■■■□□ 2.19
CLN3-219ENST00000565778 PTF1AQ7RTS3 328 aa28.71■■■□□ 2.19
CLN3-219ENST00000565778 NBPF14Q5TI25 921 aa28.7■■■□□ 2.18
CLN3-219ENST00000565778 PLSCR1O15162 318 aa28.69■■■□□ 2.18
CLN3-219ENST00000565778 PEAK1Q9H792 1746 aa28.69■■■□□ 2.18
CLN3-219ENST00000565778 NSD3Q9BZ95 1437 aa28.69■■■□□ 2.18
CLN3-219ENST00000565778 SRCAPQ6ZRS2 3230 aa28.68■■■□□ 2.18
CLN3-219ENST00000565778 WNK3Q9BYP7 1800 aa28.68■■■□□ 2.18
CLN3-219ENST00000565778 BCL9O00512 1426 aa28.67■■■□□ 2.18
CLN3-219ENST00000565778 TNS2Q63HR2 1409 aa28.66■■■□□ 2.18
CLN3-219ENST00000565778 DDX54Q8TDD1 881 aaKnown RBP28.64■■■□□ 2.18
CLN3-219ENST00000565778 ACSBG1Q96GR2 724 aa28.64■■■□□ 2.18
CLN3-219ENST00000565778 RTL1A6NKG5 1358 aa28.63■■■□□ 2.17
CLN3-219ENST00000565778 KCNQ2O43526 872 aa28.63■■■□□ 2.17
CLN3-219ENST00000565778 CGNL1Q0VF96 1302 aa28.63■■■□□ 2.17
CLN3-219ENST00000565778 HSP90AB2PQ58FF8 381 aa28.62■■■□□ 2.17
CLN3-219ENST00000565778 NBPF6Q5VWK0 638 aa28.61■■■□□ 2.17
CLN3-219ENST00000565778 NBPF4Q96M43 638 aa28.61■■■□□ 2.17
CLN3-219ENST00000565778 MYOM1P52179 1685 aa28.61■■■□□ 2.17
CLN3-219ENST00000565778 SBF2Q86WG5 1849 aa28.6■■■□□ 2.17
CLN3-219ENST00000565778 PPM1GO15355 546 aaPredicted RBP28.6■■■□□ 2.17
CLN3-219ENST00000565778 PANK3Q9H999 370 aa28.58■■■□□ 2.17
CLN3-219ENST00000565778 PROM2Q8N271 834 aa28.57■■■□□ 2.16
CLN3-219ENST00000565778 USHBP1Q8N6Y0 703 aa28.57■■■□□ 2.16
CLN3-219ENST00000565778 ZCRB1Q8TBF4 217 aaKnown RBP28.57■■■□□ 2.16
CLN3-219ENST00000565778 EMILIN1Q9Y6C2 1016 aa28.57■■■□□ 2.16
CLN3-219ENST00000565778 INSRP06213 1382 aa28.57■■■□□ 2.16
CLN3-219ENST00000565778 SMG6Q86US8 1419 aaKnown RBP28.57■■■□□ 2.16
CLN3-219ENST00000565778 KIF20BQ96Q89 1820 aa28.57■■■□□ 2.16
CLN3-219ENST00000565778 FLT4P35916 1363 aa28.56■■■□□ 2.16
CLN3-219ENST00000565778 KIF24Q5T7B8 1368 aa28.54■■■□□ 2.16
CLN3-219ENST00000565778 TXNRD1Q16881 649 aa28.54■■■□□ 2.16
CLN3-219ENST00000565778 RAPGEF4Q8WZA2 1011 aa28.54■■■□□ 2.16
CLN3-219ENST00000565778 RREB1Q92766 1687 aa28.54■■■□□ 2.16
CLN3-219ENST00000565778 FAM208AQ9UK61 1670 aaKnown RBP28.54■■■□□ 2.16
CLN3-219ENST00000565778 TNNT2P45379 298 aaPredicted RBP28.52■■■□□ 2.16
CLN3-219ENST00000565778 TATP17735 454 aaPredicted RBP28.51■■■□□ 2.15
CLN3-219ENST00000565778 NUP188Q5SRE5 1749 aa28.51■■■□□ 2.15
CLN3-219ENST00000565778 SYTL4Q96C24 671 aaPredicted RBP28.48■■■□□ 2.15
CLN3-219ENST00000565778 POLKQ9UBT6 870 aa28.48■■■□□ 2.15
CLN3-219ENST00000565778 RGPD2P0DJD1 1756 aa28.47■■■□□ 2.15
CLN3-219ENST00000565778 WASHC2AQ641Q2 1341 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms