RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 THRAP3Q9Y2W1 955 aaKnown RBP15.3■□□□□ 0.04
VPS39-208ENST00000564994 LTN1O94822 1766 aa15.29■□□□□ 0.04
VPS39-208ENST00000564994 LRRC37A3O60309 1634 aa15.28■□□□□ 0.04
VPS39-208ENST00000564994 EDC4Q6P2E9 1401 aaKnown RBP15.28■□□□□ 0.04
VPS39-208ENST00000564994 BAG6P46379 1132 aa15.28■□□□□ 0.04
VPS39-208ENST00000564994 EN1Q05925 392 aaPredicted RBP15.28■□□□□ 0.04
VPS39-208ENST00000564994 FAM196AQ6ZSG2 479 aa15.28■□□□□ 0.04
VPS39-208ENST00000564994 HDGFL2Q7Z4V5 671 aaPredicted RBP15.28■□□□□ 0.04
VPS39-208ENST00000564994 DISP2A7MBM2 1401 aa15.27■□□□□ 0.04
VPS39-208ENST00000564994 USP47Q96K76 1375 aa15.27■□□□□ 0.04
VPS39-208ENST00000564994 WDR17Q8IZU2 1322 aa15.27■□□□□ 0.04
VPS39-208ENST00000564994 PDE3BQ13370 1112 aa15.27■□□□□ 0.04
VPS39-208ENST00000564994 TOM1L2Q6ZVM7 507 aa15.27■□□□□ 0.04
VPS39-208ENST00000564994 PEAK1Q9H792 1746 aa15.26■□□□□ 0.03
VPS39-208ENST00000564994 TRIM37O94972 964 aa15.26■□□□□ 0.03
VPS39-208ENST00000564994 PCGF6Q9BYE7 350 aa15.26■□□□□ 0.03
VPS39-208ENST00000564994 TERF2IPQ9NYB0 399 aa15.26■□□□□ 0.03
VPS39-208ENST00000564994 ABCC6O95255 1503 aa15.26■□□□□ 0.03
VPS39-208ENST00000564994 OVOS2A0A0J9YW53 1432 aa15.26■□□□□ 0.03
VPS39-208ENST00000564994 OVOS2Q6IE36 1432 aa15.26■□□□□ 0.03
VPS39-208ENST00000564994 SBF2Q86WG5 1849 aa15.25■□□□□ 0.03
VPS39-208ENST00000564994 NINLQ9Y2I6 1382 aa15.24■□□□□ 0.03
VPS39-208ENST00000564994 EZH2Q15910 746 aaKnown RBP15.23■□□□□ 0.03
VPS39-208ENST00000564994 CARD10Q9BWT7 1032 aa15.23■□□□□ 0.03
VPS39-208ENST00000564994 CLSPNQ9HAW4 1339 aa15.22■□□□□ 0.03
VPS39-208ENST00000564994 SLC24A1O60721 1099 aa15.22■□□□□ 0.03
VPS39-208ENST00000564994 CSB-PGBD3P0DP91 1061 aa15.22■□□□□ 0.03
VPS39-208ENST00000564994 CAMKK2Q96RR4 588 aa15.22■□□□□ 0.03
VPS39-208ENST00000564994 TIMELESSQ9UNS1 1208 aa15.22■□□□□ 0.03
VPS39-208ENST00000564994 RREB1Q92766 1687 aa15.22■□□□□ 0.03
VPS39-208ENST00000564994 APBA3O96018 575 aa15.21■□□□□ 0.03
VPS39-208ENST00000564994 DDB1Q16531 1140 aa15.21■□□□□ 0.03
VPS39-208ENST00000564994 ANKRD36BQ8N2N9 1353 aa15.21■□□□□ 0.02
VPS39-208ENST00000564994 OVOS2A0A0G2JMS6 1433 aa15.2■□□□□ 0.02
VPS39-208ENST00000564994 PSDA5PKW4 1024 aaPredicted RBP15.2■□□□□ 0.02
VPS39-208ENST00000564994 TMF1P82094 1093 aa15.2■□□□□ 0.02
VPS39-208ENST00000564994 NUP188Q5SRE5 1749 aa15.2■□□□□ 0.02
VPS39-208ENST00000564994 ERBB3P21860 1342 aa15.19■□□□□ 0.02
VPS39-208ENST00000564994 MYOM1P52179 1685 aa15.19■□□□□ 0.02
VPS39-208ENST00000564994 MARCH10Q8NA82 808 aaPredicted RBP15.18■□□□□ 0.02
VPS39-208ENST00000564994 CDCA7Q9BWT1 371 aaPredicted RBP15.18■□□□□ 0.02
VPS39-208ENST00000564994 CCDC7Q96M83 1385 aa15.18■□□□□ 0.02
VPS39-208ENST00000564994 LRP5O75197 1615 aa15.17■□□□□ 0.02
VPS39-208ENST00000564994 PARD3Q8TEW0 1356 aa15.16■□□□□ 0.02
VPS39-208ENST00000564994 KIF20BQ96Q89 1820 aa15.16■□□□□ 0.02
VPS39-208ENST00000564994 FBLN1P23142 703 aa15.16■□□□□ 0.02
VPS39-208ENST00000564994 PTF1AQ7RTS3 328 aa15.16■□□□□ 0.02
VPS39-208ENST00000564994 ANKRD24Q8TF21 1146 aa15.16■□□□□ 0.02
VPS39-208ENST00000564994 RGPD3A6NKT7 1758 aaPredicted RBP15.16■□□□□ 0.02
VPS39-208ENST00000564994 RGPD2P0DJD1 1756 aa15.16■□□□□ 0.02
VPS39-208ENST00000564994 RGPD4Q7Z3J3 1758 aa15.16■□□□□ 0.02
VPS39-208ENST00000564994 C11orf95C9JLR9 678 aaPredicted RBP15.15■□□□□ 0.02
VPS39-208ENST00000564994 R3HDM1Q15032 1099 aaKnown RBP15.15■□□□□ 0.02
VPS39-208ENST00000564994 IP6K1Q92551 441 aa15.15■□□□□ 0.02
VPS39-208ENST00000564994 COG3Q96JB2 828 aa15.15■□□□□ 0.02
VPS39-208ENST00000564994 NLRP2Q9NX02 1062 aa15.15■□□□□ 0.02
VPS39-208ENST00000564994 BCL9O00512 1426 aa15.15■□□□□ 0.02
VPS39-208ENST00000564994 TNS2Q63HR2 1409 aa15.15■□□□□ 0.02
VPS39-208ENST00000564994 FAM208AQ9UK61 1670 aaKnown RBP15.15■□□□□ 0.02
VPS39-208ENST00000564994 EXOC5O00471 708 aa15.14■□□□□ 0.01
VPS39-208ENST00000564994 FYB1O15117 783 aa15.14■□□□□ 0.01
VPS39-208ENST00000564994 MAP3K19Q56UN5 1328 aa15.14■□□□□ 0.01
VPS39-208ENST00000564994 CDCA8Q53HL2 280 aa15.13■□□□□ 0.01
VPS39-208ENST00000564994 GGNBP2Q9H3C7 697 aa15.13■□□□□ 0.01
VPS39-208ENST00000564994 HOXC9P31274 260 aa15.12■□□□□ 0.01
VPS39-208ENST00000564994 CCER1Q8TC90 406 aaPredicted RBP15.12■□□□□ 0.01
VPS39-208ENST00000564994 CARD14Q9BXL6 1004 aa15.12■□□□□ 0.01
VPS39-208ENST00000564994 BCL11BQ9C0K0 894 aaPredicted RBP15.12■□□□□ 0.01
VPS39-208ENST00000564994 IL2RBP14784 551 aa15.11■□□□□ 0.01
VPS39-208ENST00000564994 LTV1Q96GA3 475 aaPredicted RBP15.11■□□□□ 0.01
VPS39-208ENST00000564994 KAT6BQ8WYB5 2073 aa15.11■□□□□ 0.01
VPS39-208ENST00000564994 NHSQ6T4R5 1651 aa15.1■□□□□ 0.01
VPS39-208ENST00000564994 PLSCR1O15162 318 aa15.1■□□□□ 0.01
VPS39-208ENST00000564994 RRS1Q15050 365 aaKnown RBP15.09■□□□□ 0.01
VPS39-208ENST00000564994 NSD3Q9BZ95 1437 aa15.09■□□□□ 0.01
VPS39-208ENST00000564994 KCNQ2O43526 872 aa15.08■□□□□ 0
VPS39-208ENST00000564994 AMPHP49418 695 aa15.08■□□□□ 0
VPS39-208ENST00000564994 PROM2Q8N271 834 aa15.08■□□□□ 0
VPS39-208ENST00000564994 SHANK3Q9BYB0 1731 aa15.08■□□□□ 0
VPS39-208ENST00000564994 RTL1A6NKG5 1358 aa15.07■□□□□ 0
VPS39-208ENST00000564994 BTAF1O14981 1849 aa15.06■□□□□ 0
VPS39-208ENST00000564994 NBPF14Q5TI25 921 aa15.06■□□□□ 0
VPS39-208ENST00000564994 ACSBG1Q96GR2 724 aa15.06■□□□□ 0
VPS39-208ENST00000564994 HSPA5P11021 654 aaKnown RBP15.05■□□□□ -0
VPS39-208ENST00000564994 MAP2P11137 1827 aaKnown RBP15.04■□□□□ -0
VPS39-208ENST00000564994 MEGF6O75095 1541 aa15.04■□□□□ -0
VPS39-208ENST00000564994 EIF4G2P78344 907 aaKnown RBP eCLIP15.04■□□□□ -0
VPS39-208ENST00000564994 ANO8Q9HCE9 1232 aaPredicted RBP15.04■□□□□ -0
VPS39-208ENST00000564994 ANKRD26Q9UPS8 1709 aa15.03■□□□□ -0
VPS39-208ENST00000564994 HSP90AB2PQ58FF8 381 aa15.03■□□□□ -0
VPS39-208ENST00000564994 NBPF6Q5VWK0 638 aa15.03■□□□□ -0
VPS39-208ENST00000564994 NBPF4Q96M43 638 aa15.03■□□□□ -0
VPS39-208ENST00000564994 INSRP06213 1382 aa15.02■□□□□ -0
VPS39-208ENST00000564994 TXNRD1Q16881 649 aa15.02■□□□□ -0
VPS39-208ENST00000564994 USHBP1Q8N6Y0 703 aa15.02■□□□□ -0
VPS39-208ENST00000564994 DDX54Q8TDD1 881 aaKnown RBP15.02■□□□□ -0
VPS39-208ENST00000564994 POLR3GLQ9BT43 218 aa15.02■□□□□ -0
VPS39-208ENST00000564994 CASZ1Q86V15 1759 aa15.02□□□□□ -0.01
VPS39-208ENST00000564994 DOT1LQ8TEK3 1739 aa15.02□□□□□ -0.01
VPS39-208ENST00000564994 FLT4P35916 1363 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms