RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 LRP6O75581 1613 aa27.8■■■□□ 2.04
CLN3-212ENST00000564574 RGPD5Q99666 1765 aa27.79■■■□□ 2.04
CLN3-212ENST00000564574 BLMP54132 1417 aaPredicted RBP27.79■■■□□ 2.04
CLN3-212ENST00000564574 INSRP06213 1382 aa27.79■■■□□ 2.04
CLN3-212ENST00000564574 IP6K1Q92551 441 aa27.79■■■□□ 2.04
CLN3-212ENST00000564574 ZBTB7CA1YPR0 619 aa27.78■■■□□ 2.04
CLN3-212ENST00000564574 CFAP53Q96M91 514 aa27.78■■■□□ 2.04
CLN3-212ENST00000564574 PLCH1Q4KWH8 1693 aa27.78■■■□□ 2.04
CLN3-212ENST00000564574 PPM1GO15355 546 aaPredicted RBP27.77■■■□□ 2.04
CLN3-212ENST00000564574 HOXC9P31274 260 aa27.77■■■□□ 2.04
CLN3-212ENST00000564574 NWD2Q9ULI1 1742 aa27.76■■■□□ 2.03
CLN3-212ENST00000564574 ADAMTS2O95450 1211 aa27.76■■■□□ 2.03
CLN3-212ENST00000564574 MIER1Q8N108 512 aa27.75■■■□□ 2.03
CLN3-212ENST00000564574 FAM83GA6ND36 823 aa27.74■■■□□ 2.03
CLN3-212ENST00000564574 CCER2I3L3R5 266 aa27.74■■■□□ 2.03
CLN3-212ENST00000564574 CHRNA2Q15822 529 aa27.74■■■□□ 2.03
CLN3-212ENST00000564574 RGS17Q9UGC6 210 aaPredicted RBP27.74■■■□□ 2.03
CLN3-212ENST00000564574 COL3A1P02461 1466 aaPredicted RBP27.73■■■□□ 2.03
CLN3-212ENST00000564574 FAM208AQ9UK61 1670 aaKnown RBP27.72■■■□□ 2.03
CLN3-212ENST00000564574 CAMTA1Q9Y6Y1 1673 aa27.72■■■□□ 2.03
CLN3-212ENST00000564574 HSP90AB2PQ58FF8 381 aa27.71■■■□□ 2.03
CLN3-212ENST00000564574 MEX3CQ5U5Q3 659 aaKnown RBP27.7■■■□□ 2.02
CLN3-212ENST00000564574 SLIT2O94813 1529 aa27.69■■■□□ 2.02
CLN3-212ENST00000564574 AXIN2Q9Y2T1 843 aa27.69■■■□□ 2.02
CLN3-212ENST00000564574 NRAPQ86VF7 1730 aa27.69■■■□□ 2.02
CLN3-212ENST00000564574 COL5A2P05997 1499 aaPredicted RBP27.68■■■□□ 2.02
CLN3-212ENST00000564574 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.67■■■□□ 2.02
CLN3-212ENST00000564574 DIAPH1O60610 1272 aaKnown RBP27.67■■■□□ 2.02
CLN3-212ENST00000564574 C8orf37Q96NL8 207 aa27.66■■■□□ 2.02
CLN3-212ENST00000564574 MRS2Q9HD23 443 aa27.66■■■□□ 2.02
CLN3-212ENST00000564574 BTG4Q9NY30 223 aa27.66■■■□□ 2.02
CLN3-212ENST00000564574 ERBB3P21860 1342 aa27.66■■■□□ 2.02
CLN3-212ENST00000564574 EIF4A2Q14240 407 aaKnown RBP27.65■■■□□ 2.02
CLN3-212ENST00000564574 ANKRD24Q8TF21 1146 aa27.65■■■□□ 2.02
CLN3-212ENST00000564574 NGLY1Q96IV0 654 aa27.65■■■□□ 2.02
CLN3-212ENST00000564574 NUDCQ9Y266 331 aa27.64■■■□□ 2.02
CLN3-212ENST00000564574 RGPD1P0DJD0 1748 aa27.64■■■□□ 2.01
CLN3-212ENST00000564574 IL13P35225 146 aa27.63■■■□□ 2.01
CLN3-212ENST00000564574 FNBP4Q8N3X1 1017 aaPredicted RBP27.63■■■□□ 2.01
CLN3-212ENST00000564574 CCDC184Q52MB2 194 aa27.62■■■□□ 2.01
CLN3-212ENST00000564574 RGPD2P0DJD1 1756 aa27.62■■■□□ 2.01
CLN3-212ENST00000564574 EVA1CP58658 441 aa27.61■■■□□ 2.01
CLN3-212ENST00000564574 LTV1Q96GA3 475 aaPredicted RBP27.61■■■□□ 2.01
CLN3-212ENST00000564574 WDR17Q8IZU2 1322 aa27.61■■■□□ 2.01
CLN3-212ENST00000564574 CSB-PGBD3P0DP91 1061 aa27.59■■■□□ 2.01
CLN3-212ENST00000564574 POTEAQ6S8J7 498 aa27.59■■■□□ 2.01
CLN3-212ENST00000564574 UNC5CLQ8IV45 518 aa27.58■■■□□ 2.01
CLN3-212ENST00000564574 BCL9LQ86UU0 1499 aa27.57■■■□□ 2
CLN3-212ENST00000564574 STRN4Q9NRL3 753 aa27.57■■■□□ 2
CLN3-212ENST00000564574 CRB1P82279 1406 aa27.57■■■□□ 2
CLN3-212ENST00000564574 AFF2P51816 1311 aa27.56■■■□□ 2
CLN3-212ENST00000564574 IGSF1Q8N6C5 1336 aa27.56■■■□□ 2
CLN3-212ENST00000564574 WDR43Q15061 677 aaKnown RBP eCLIP27.55■■■□□ 2
CLN3-212ENST00000564574 USP21Q9UK80 565 aa27.55■■■□□ 2
CLN3-212ENST00000564574 NCAPD2Q15021 1401 aa27.55■■■□□ 2
CLN3-212ENST00000564574 U2SURPO15042 1029 aaKnown RBP27.54■■■□□ 2
CLN3-212ENST00000564574 PNISRQ8TF01 805 aaKnown RBP27.54■■■□□ 2
CLN3-212ENST00000564574 EYA1Q99502 592 aa27.54■■■□□ 2
CLN3-212ENST00000564574 LARP1Q6PKG0 1096 aaKnown RBP27.53■■■□□ 2
CLN3-212ENST00000564574 TOM1L2Q6ZVM7 507 aa27.53■■■□□ 2
CLN3-212ENST00000564574 NBPF6Q5VWK0 638 aa27.52■■■□□ 2
CLN3-212ENST00000564574 NBPF4Q96M43 638 aa27.52■■■□□ 2
CLN3-212ENST00000564574 CARD10Q9BWT7 1032 aa27.52■■■□□ 2
CLN3-212ENST00000564574 NLRP2Q9NX02 1062 aa27.52■■■□□ 2
CLN3-212ENST00000564574 U2AF1L5P0DN76 240 aaPredicted RBP27.51■■□□□ 1.99
CLN3-212ENST00000564574 U2AF1Q01081 240 aaKnown RBP eCLIP27.51■■□□□ 1.99
CLN3-212ENST00000564574 VPS72Q15906 364 aa27.51■■□□□ 1.99
CLN3-212ENST00000564574 KDRP35968 1356 aa27.49■■□□□ 1.99
CLN3-212ENST00000564574 WNK3Q9BYP7 1800 aa27.48■■□□□ 1.99
CLN3-212ENST00000564574 ZNF772Q68DY9 489 aaPredicted RBP27.48■■□□□ 1.99
CLN3-212ENST00000564574 TRPC5Q9UL62 973 aaPredicted RBP27.47■■□□□ 1.99
CLN3-212ENST00000564574 ATRNO75882 1429 aa27.47■■□□□ 1.99
CLN3-212ENST00000564574 SPATA31A5Q5VU36 1347 aa27.46■■□□□ 1.99
CLN3-212ENST00000564574 SPATA31A7Q8IWB4 1347 aa27.46■■□□□ 1.99
CLN3-212ENST00000564574 FCHSD2O94868 740 aa27.46■■□□□ 1.99
CLN3-212ENST00000564574 SULT6B1Q6IMI4 303 aa27.46■■□□□ 1.99
CLN3-212ENST00000564574 PNNQ9H307 717 aaKnown RBP27.46■■□□□ 1.99
CLN3-212ENST00000564574 SPATA31A1Q5TZJ5 1347 aa27.45■■□□□ 1.99
CLN3-212ENST00000564574 PARP4Q9UKK3 1724 aaKnown RBP27.45■■□□□ 1.99
CLN3-212ENST00000564574 THRAP3Q9Y2W1 955 aaKnown RBP27.45■■□□□ 1.98
CLN3-212ENST00000564574 PLEKHG2Q9H7P9 1386 aa27.45■■□□□ 1.98
CLN3-212ENST00000564574 USHBP1Q8N6Y0 703 aa27.44■■□□□ 1.98
CLN3-212ENST00000564574 ADAMTS8Q9UP79 889 aa27.44■■□□□ 1.98
CLN3-212ENST00000564574 HMOX1P09601 288 aa27.43■■□□□ 1.98
CLN3-212ENST00000564574 FAM9BQ8IZU0 186 aa27.43■■□□□ 1.98
CLN3-212ENST00000564574 CCDC9Q9Y3X0 531 aaKnown RBP27.43■■□□□ 1.98
CLN3-212ENST00000564574 AEBP1Q8IUX7 1158 aa27.42■■□□□ 1.98
CLN3-212ENST00000564574 TCP11L2Q8N4U5 519 aa27.42■■□□□ 1.98
CLN3-212ENST00000564574 RSPH6AQ9H0K4 717 aa27.42■■□□□ 1.98
CLN3-212ENST00000564574 QTRT2Q9H974 415 aaKnown RBP27.4■■□□□ 1.98
CLN3-212ENST00000564574 GLI3P10071 1580 aa27.39■■□□□ 1.98
CLN3-212ENST00000564574 BARGINQ6ZT62 677 aa27.39■■□□□ 1.98
CLN3-212ENST00000564574 RAPGEF4Q8WZA2 1011 aa27.39■■□□□ 1.98
CLN3-212ENST00000564574 USP35Q9P2H5 1018 aa27.39■■□□□ 1.98
CLN3-212ENST00000564574 TATP17735 454 aaPredicted RBP27.38■■□□□ 1.97
CLN3-212ENST00000564574 PRKAR2BP31323 418 aa27.38■■□□□ 1.97
CLN3-212ENST00000564574 GJD4Q96KN9 370 aaPredicted RBP27.38■■□□□ 1.97
CLN3-212ENST00000564574 CDCA7Q9BWT1 371 aaPredicted RBP27.38■■□□□ 1.97
CLN3-212ENST00000564574 DISP2A7MBM2 1401 aa27.38■■□□□ 1.97
CLN3-212ENST00000564574 NEFMP07197 916 aa27.37■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms