RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 PARD3Q8TEW0 1356 aa24.39■■□□□ 1.49
VPS9D1-203ENST00000563798 ZBTB7CA1YPR0 619 aa24.38■■□□□ 1.49
VPS9D1-203ENST00000563798 SLC24A1O60721 1099 aa24.37■■□□□ 1.49
VPS9D1-203ENST00000563798 TESK2Q96S53 571 aa24.37■■□□□ 1.49
VPS9D1-203ENST00000563798 TOM1L2Q6ZVM7 507 aa24.36■■□□□ 1.49
VPS9D1-203ENST00000563798 SLC12A5Q9H2X9 1139 aa24.36■■□□□ 1.49
VPS9D1-203ENST00000563798 EZH2Q15910 746 aaKnown RBP24.35■■□□□ 1.49
VPS9D1-203ENST00000563798 HDGFL2Q7Z4V5 671 aaPredicted RBP24.35■■□□□ 1.49
VPS9D1-203ENST00000563798 CDCA7Q9BWT1 371 aaPredicted RBP24.35■■□□□ 1.49
VPS9D1-203ENST00000563798 EDC4Q6P2E9 1401 aaKnown RBP24.35■■□□□ 1.49
VPS9D1-203ENST00000563798 APBA3O96018 575 aa24.34■■□□□ 1.49
VPS9D1-203ENST00000563798 TMC1Q8TDI8 760 aa24.34■■□□□ 1.49
VPS9D1-203ENST00000563798 CARD10Q9BWT7 1032 aa24.34■■□□□ 1.49
VPS9D1-203ENST00000563798 TERF2IPQ9NYB0 399 aa24.34■■□□□ 1.49
VPS9D1-203ENST00000563798 PEAK1Q9H792 1746 aa24.33■■□□□ 1.49
VPS9D1-203ENST00000563798 NINLQ9Y2I6 1382 aa24.33■■□□□ 1.49
VPS9D1-203ENST00000563798 LRP5O75197 1615 aa24.33■■□□□ 1.49
VPS9D1-203ENST00000563798 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.33■■□□□ 1.49
VPS9D1-203ENST00000563798 LRRC37A3O60309 1634 aa24.32■■□□□ 1.48
VPS9D1-203ENST00000563798 ST20-MTHFSA0A0A6YYL1 179 aa24.32■■□□□ 1.48
VPS9D1-203ENST00000563798 NME9Q86XW9 330 aa24.32■■□□□ 1.48
VPS9D1-203ENST00000563798 A0A1W2PP64 1363 aa24.31■■□□□ 1.48
VPS9D1-203ENST00000563798 OVOS2A0A0G2JMS6 1433 aa24.31■■□□□ 1.48
VPS9D1-203ENST00000563798 OVOS2A0A0J9YW53 1432 aa24.31■■□□□ 1.48
VPS9D1-203ENST00000563798 DDB1Q16531 1140 aa24.31■■□□□ 1.48
VPS9D1-203ENST00000563798 OVOS2Q6IE36 1432 aa24.31■■□□□ 1.48
VPS9D1-203ENST00000563798 WNK3Q9BYP7 1800 aa24.31■■□□□ 1.48
VPS9D1-203ENST00000563798 BCL9O00512 1426 aa24.3■■□□□ 1.48
VPS9D1-203ENST00000563798 RGPD5Q99666 1765 aa24.3■■□□□ 1.48
VPS9D1-203ENST00000563798 PSDA5PKW4 1024 aaPredicted RBP24.3■■□□□ 1.48
VPS9D1-203ENST00000563798 SOX12O15370 315 aa24.3■■□□□ 1.48
VPS9D1-203ENST00000563798 CCDC7Q96M83 1385 aa24.29■■□□□ 1.48
VPS9D1-203ENST00000563798 RREB1Q92766 1687 aa24.27■■□□□ 1.48
VPS9D1-203ENST00000563798 CSB-PGBD3P0DP91 1061 aa24.27■■□□□ 1.48
VPS9D1-203ENST00000563798 R3HDM1Q15032 1099 aaKnown RBP24.26■■□□□ 1.47
VPS9D1-203ENST00000563798 ERBB3P21860 1342 aa24.25■■□□□ 1.47
VPS9D1-203ENST00000563798 MARCH10Q8NA82 808 aaPredicted RBP24.24■■□□□ 1.47
VPS9D1-203ENST00000563798 TIMELESSQ9UNS1 1208 aa24.24■■□□□ 1.47
VPS9D1-203ENST00000563798 SBF2Q86WG5 1849 aa24.23■■□□□ 1.47
VPS9D1-203ENST00000563798 PLSCR1O15162 318 aa24.22■■□□□ 1.47
VPS9D1-203ENST00000563798 BCL11BQ9C0K0 894 aaPredicted RBP24.22■■□□□ 1.47
VPS9D1-203ENST00000563798 RGPD3A6NKT7 1758 aaPredicted RBP24.21■■□□□ 1.47
VPS9D1-203ENST00000563798 RGPD4Q7Z3J3 1758 aa24.21■■□□□ 1.47
VPS9D1-203ENST00000563798 NUP188Q5SRE5 1749 aa24.21■■□□□ 1.47
VPS9D1-203ENST00000563798 LTN1O94822 1766 aa24.21■■□□□ 1.47
VPS9D1-203ENST00000563798 USP47Q96K76 1375 aa24.2■■□□□ 1.46
VPS9D1-203ENST00000563798 CLSPNQ9HAW4 1339 aa24.2■■□□□ 1.46
VPS9D1-203ENST00000563798 EXOC5O00471 708 aa24.2■■□□□ 1.46
VPS9D1-203ENST00000563798 ANKRD36BQ8N2N9 1353 aa24.19■■□□□ 1.46
VPS9D1-203ENST00000563798 TNS2Q63HR2 1409 aa24.18■■□□□ 1.46
VPS9D1-203ENST00000563798 TMF1P82094 1093 aa24.18■■□□□ 1.46
VPS9D1-203ENST00000563798 NBPF14Q5TI25 921 aa24.18■■□□□ 1.46
VPS9D1-203ENST00000563798 IP6K1Q92551 441 aa24.17■■□□□ 1.46
VPS9D1-203ENST00000563798 ANKRD24Q8TF21 1146 aa24.16■■□□□ 1.46
VPS9D1-203ENST00000563798 NLRP2Q9NX02 1062 aa24.16■■□□□ 1.46
VPS9D1-203ENST00000563798 PTF1AQ7RTS3 328 aa24.14■■□□□ 1.45
VPS9D1-203ENST00000563798 COG3Q96JB2 828 aa24.14■■□□□ 1.45
VPS9D1-203ENST00000563798 IL2RBP14784 551 aa24.13■■□□□ 1.45
VPS9D1-203ENST00000563798 CDCA8Q53HL2 280 aa24.13■■□□□ 1.45
VPS9D1-203ENST00000563798 PROM2Q8N271 834 aa24.1■■□□□ 1.45
VPS9D1-203ENST00000563798 MAP3K19Q56UN5 1328 aa24.1■■□□□ 1.45
VPS9D1-203ENST00000563798 FAM208AQ9UK61 1670 aaKnown RBP24.09■■□□□ 1.45
VPS9D1-203ENST00000563798 FYB1O15117 783 aa24.09■■□□□ 1.45
VPS9D1-203ENST00000563798 HOXC9P31274 260 aa24.07■■□□□ 1.44
VPS9D1-203ENST00000563798 RTL1A6NKG5 1358 aa24.06■■□□□ 1.44
VPS9D1-203ENST00000563798 NHSQ6T4R5 1651 aa24.06■■□□□ 1.44
VPS9D1-203ENST00000563798 KCNQ2O43526 872 aa24.04■■□□□ 1.44
VPS9D1-203ENST00000563798 FBLN1P23142 703 aa24.03■■□□□ 1.44
VPS9D1-203ENST00000563798 AMPHP49418 695 aa24.03■■□□□ 1.44
VPS9D1-203ENST00000563798 TXNRD1Q16881 649 aa24.03■■□□□ 1.44
VPS9D1-203ENST00000563798 ANO8Q9HCE9 1232 aaPredicted RBP24.03■■□□□ 1.44
VPS9D1-203ENST00000563798 GGNBP2Q9H3C7 697 aa24.02■■□□□ 1.44
VPS9D1-203ENST00000563798 LTV1Q96GA3 475 aaPredicted RBP24.01■■□□□ 1.43
VPS9D1-203ENST00000563798 PCGF6Q9BYE7 350 aa24.01■■□□□ 1.43
VPS9D1-203ENST00000563798 SPON1Q9HCB6 807 aa24■■□□□ 1.43
VPS9D1-203ENST00000563798 KIF24Q5T7B8 1368 aa24■■□□□ 1.43
VPS9D1-203ENST00000563798 MYOM1P52179 1685 aa23.99■■□□□ 1.43
VPS9D1-203ENST00000563798 CARD14Q9BXL6 1004 aa23.99■■□□□ 1.43
VPS9D1-203ENST00000563798 RRS1Q15050 365 aaKnown RBP23.98■■□□□ 1.43
VPS9D1-203ENST00000563798 ACSBG1Q96GR2 724 aa23.98■■□□□ 1.43
VPS9D1-203ENST00000563798 CASZ1Q86V15 1759 aa23.98■■□□□ 1.43
VPS9D1-203ENST00000563798 KIF20BQ96Q89 1820 aa23.96■■□□□ 1.43
VPS9D1-203ENST00000563798 INSRP06213 1382 aa23.95■■□□□ 1.42
VPS9D1-203ENST00000563798 SLC15A2Q16348 729 aa23.95■■□□□ 1.42
VPS9D1-203ENST00000563798 CGNL1Q0VF96 1302 aa23.94■■□□□ 1.42
VPS9D1-203ENST00000563798 NBPF6Q5VWK0 638 aa23.94■■□□□ 1.42
VPS9D1-203ENST00000563798 NBPF4Q96M43 638 aa23.94■■□□□ 1.42
VPS9D1-203ENST00000563798 STK32BQ9NY57 414 aa23.94■■□□□ 1.42
VPS9D1-203ENST00000563798 BTAF1O14981 1849 aa23.94■■□□□ 1.42
VPS9D1-203ENST00000563798 ZCRB1Q8TBF4 217 aaKnown RBP23.93■■□□□ 1.42
VPS9D1-203ENST00000563798 DDX54Q8TDD1 881 aaKnown RBP23.93■■□□□ 1.42
VPS9D1-203ENST00000563798 MEGF6O75095 1541 aa23.93■■□□□ 1.42
VPS9D1-203ENST00000563798 RGPD2P0DJD1 1756 aa23.93■■□□□ 1.42
VPS9D1-203ENST00000563798 NSD3Q9BZ95 1437 aa23.93■■□□□ 1.42
VPS9D1-203ENST00000563798 FLT4P35916 1363 aa23.92■■□□□ 1.42
VPS9D1-203ENST00000563798 SMG6Q86US8 1419 aaKnown RBP23.92■■□□□ 1.42
VPS9D1-203ENST00000563798 PAPPAQ13219 1627 aa23.92■■□□□ 1.42
VPS9D1-203ENST00000563798 HSP90AB2PQ58FF8 381 aa23.9■■□□□ 1.42
VPS9D1-203ENST00000563798 PDGFDQ9GZP0 370 aaPredicted RBP23.9■■□□□ 1.42
VPS9D1-203ENST00000563798 SHANK3Q9BYB0 1731 aa23.9■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms