RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 CCDC38Q502W7 563 aa7.37□□□□□ -1.23
CLK3-212ENST00000563418 DRC1Q96MC2 740 aa7.37□□□□□ -1.23
CLK3-212ENST00000563418 BAG4O95429 457 aaKnown RBP7.37□□□□□ -1.23
CLK3-212ENST00000563418 NBPF8Q3BBV2 869 aa7.37□□□□□ -1.23
CLK3-212ENST00000563418 NOL8Q76FK4 1167 aaKnown RBP7.37□□□□□ -1.23
CLK3-212ENST00000563418 MICALL1Q8N3F8 863 aa7.37□□□□□ -1.23
CLK3-212ENST00000563418 TERF2IPQ9NYB0 399 aa7.37□□□□□ -1.23
CLK3-212ENST00000563418 ZNF445P59923 1031 aa7.37□□□□□ -1.23
CLK3-212ENST00000563418 KRT85P78386 507 aa7.37□□□□□ -1.23
CLK3-212ENST00000563418 RAB3GAP1Q15042 981 aa7.37□□□□□ -1.23
CLK3-212ENST00000563418 CLIP2Q9UDT6 1046 aa7.37□□□□□ -1.23
CLK3-212ENST00000563418 ICE2Q659A1 982 aa7.37□□□□□ -1.23
CLK3-212ENST00000563418 DHX37Q8IY37 1157 aaKnown RBP7.37□□□□□ -1.23
CLK3-212ENST00000563418 CTCFLQ8NI51 663 aaPredicted RBP7.37□□□□□ -1.23
CLK3-212ENST00000563418 SPATS2Q86XZ4 545 aaKnown RBP7.37□□□□□ -1.23
CLK3-212ENST00000563418 GOLGA5Q8TBA6 731 aa7.37□□□□□ -1.23
CLK3-212ENST00000563418 CUX2O14529 1486 aa7.36□□□□□ -1.23
CLK3-212ENST00000563418 B4GALNT4Q76KP1 1039 aa7.36□□□□□ -1.23
CLK3-212ENST00000563418 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.36□□□□□ -1.23
CLK3-212ENST00000563418 SMC5Q8IY18 1101 aa7.36□□□□□ -1.23
CLK3-212ENST00000563418 SNW1Q13573 536 aaKnown RBP7.36□□□□□ -1.23
CLK3-212ENST00000563418 TICAM2Q86XR7 235 aa7.36□□□□□ -1.23
CLK3-212ENST00000563418 SLTMQ9NWH9 1034 aaKnown RBP eCLIP7.36□□□□□ -1.23
CLK3-212ENST00000563418 CEP83Q9Y592 693 aa7.36□□□□□ -1.23
CLK3-212ENST00000563418 RAPGEF2Q9Y4G8 1499 aa7.36□□□□□ -1.23
CLK3-212ENST00000563418 ERLIN2O94905 339 aa7.36□□□□□ -1.23
CLK3-212ENST00000563418 ARHGAP25P42331 645 aa7.36□□□□□ -1.23
CLK3-212ENST00000563418 DNAJC21Q5F1R6 531 aaKnown RBP7.36□□□□□ -1.23
CLK3-212ENST00000563418 SPAG9O60271 1321 aaKnown RBP7.36□□□□□ -1.23
CLK3-212ENST00000563418 LRPPRCP42704 1394 aaKnown RBP7.36□□□□□ -1.23
CLK3-212ENST00000563418 VPS37CA5D8V6 355 aaPredicted RBP7.35□□□□□ -1.23
CLK3-212ENST00000563418 CTAGE5O15320 804 aa7.35□□□□□ -1.23
CLK3-212ENST00000563418 C8orf34Q49A92 452 aa7.35□□□□□ -1.23
CLK3-212ENST00000563418 ELP1O95163 1332 aa7.35□□□□□ -1.23
CLK3-212ENST00000563418 KIF3CO14782 793 aa7.35□□□□□ -1.23
CLK3-212ENST00000563418 SH2D4BQ5SQS7 431 aa7.35□□□□□ -1.23
CLK3-212ENST00000563418 CCDC148Q8NFR7 591 aa7.35□□□□□ -1.23
CLK3-212ENST00000563418 DACH1Q9UI36 760 aa7.35□□□□□ -1.23
CLK3-212ENST00000563418 SLC20A2Q08357 652 aa7.35□□□□□ -1.23
CLK3-212ENST00000563418 CCDC83Q8IWF9 413 aa7.35□□□□□ -1.23
CLK3-212ENST00000563418 ANKRD18BA2A2Z9 1011 aa7.35□□□□□ -1.23
CLK3-212ENST00000563418 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP7.35□□□□□ -1.23
CLK3-212ENST00000563418 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.35□□□□□ -1.23
CLK3-212ENST00000563418 ZNF396Q96N95 335 aaPredicted RBP7.35□□□□□ -1.23
CLK3-212ENST00000563418 PSMA5P28066 241 aa7.34□□□□□ -1.23
CLK3-212ENST00000563418 GTF2E1P29083 439 aaPredicted RBP7.34□□□□□ -1.23
CLK3-212ENST00000563418 GIGYF2Q6Y7W6 1299 aaKnown RBP7.34□□□□□ -1.23
CLK3-212ENST00000563418 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.34□□□□□ -1.23
CLK3-212ENST00000563418 NCAPGQ9BPX3 1015 aa7.34□□□□□ -1.23
CLK3-212ENST00000563418 WDR63Q8IWG1 891 aa7.34□□□□□ -1.23
CLK3-212ENST00000563418 MEX3CQ5U5Q3 659 aaKnown RBP7.34□□□□□ -1.23
CLK3-212ENST00000563418 SPATA24Q86W54 205 aa7.34□□□□□ -1.23
CLK3-212ENST00000563418 FOXD4L6Q3SYB3 417 aaPredicted RBP7.34□□□□□ -1.23
CLK3-212ENST00000563418 FOXD4L3Q6VB84 417 aaPredicted RBP7.34□□□□□ -1.23
CLK3-212ENST00000563418 SEPT14Q6ZU15 432 aa7.34□□□□□ -1.23
CLK3-212ENST00000563418 NUP133Q8WUM0 1156 aa7.34□□□□□ -1.23
CLK3-212ENST00000563418 MAP3K1Q13233 1512 aa7.34□□□□□ -1.23
CLK3-212ENST00000563418 KIF5CO60282 957 aa7.34□□□□□ -1.23
CLK3-212ENST00000563418 API5Q9BZZ5 524 aaKnown RBP7.34□□□□□ -1.23
CLK3-212ENST00000563418 RAD50Q92878 1312 aa7.34□□□□□ -1.23
CLK3-212ENST00000563418 PLEKHD1A6NEE1 506 aa7.34□□□□□ -1.24
CLK3-212ENST00000563418 SDF4Q9BRK5 362 aa7.34□□□□□ -1.24
CLK3-212ENST00000563418 NCOA1Q15788 1441 aa7.34□□□□□ -1.24
CLK3-212ENST00000563418 NEBLO76041 1014 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 U2AF2P26368 475 aaKnown RBP eCLIP7.33□□□□□ -1.24
CLK3-212ENST00000563418 FIBPO43427 364 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 EFCAB13Q8IY85 973 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 CFAP45Q9UL16 551 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 ZKSCAN8Q15776 578 aaPredicted RBP7.33□□□□□ -1.24
CLK3-212ENST00000563418 ZSCAN26Q16670 478 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 FMNL2Q96PY5 1086 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 NUCKS1Q9H1E3 243 aaKnown RBP7.33□□□□□ -1.24
CLK3-212ENST00000563418 JRKLQ9Y4A0 524 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 ATP8B1O43520 1251 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 U2AF1L5P0DN76 240 aaPredicted RBP7.33□□□□□ -1.24
CLK3-212ENST00000563418 U2AF1Q01081 240 aaKnown RBP eCLIP7.33□□□□□ -1.24
CLK3-212ENST00000563418 MSL1Q68DK7 614 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 BCL2L12Q9HB09 334 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 SPECC1LQ69YQ0 1117 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 FILIP1LQ4L180 1135 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 ERC2O15083 957 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 CLNS1AP54105 237 aaKnown RBP7.33□□□□□ -1.24
CLK3-212ENST00000563418 UBE2HP62256 183 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 HDXQ7Z353 690 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 ABCF1Q8NE71 845 aaKnown RBP eCLIP7.33□□□□□ -1.24
CLK3-212ENST00000563418 SCAND2PQ9GZW5 306 aaPredicted RBP7.33□□□□□ -1.24
CLK3-212ENST00000563418 NEK4P51957 841 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 PANK1Q8TE04 598 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 CFDP1Q9UEE9 299 aaPredicted RBP7.33□□□□□ -1.24
CLK3-212ENST00000563418 RNF123Q5XPI4 1314 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 ANKRD1Q15327 319 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 LRRC9Q6ZRR7 1453 aa7.33□□□□□ -1.24
CLK3-212ENST00000563418 LUC7LQ9NQ29 371 aaKnown RBP7.33□□□□□ -1.24
CLK3-212ENST00000563418 RLBP1P12271 317 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 NAA25Q14CX7 972 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 SATB1Q01826 763 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 DDX19AQ9NUU7 478 aaKnown RBP7.32□□□□□ -1.24
CLK3-212ENST00000563418 PDILTQ8N807 584 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 FAM200AQ8TCP9 573 aa7.32□□□□□ -1.24
CLK3-212ENST00000563418 ANO2Q9NQ90 1003 aa7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms