RNA–Protein interactions for RNA: ENST00000563404.1

HDGFL3-203, Transcript of HDGF like 3, humanhuman

TSL 5

Gene HDGFL3, Length 448 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDGFL3-203ENST00000563404 SOX12O15370 315 aa24.03■■□□□ 1.44
HDGFL3-203ENST00000563404 TTC21AQ8NDW8 1320 aa24.03■■□□□ 1.44
HDGFL3-203ENST00000563404 NFAT5O94916 1531 aa24.02■■□□□ 1.44
HDGFL3-203ENST00000563404 DDB1Q16531 1140 aa24.02■■□□□ 1.44
HDGFL3-203ENST00000563404 PTF1AQ7RTS3 328 aa24.02■■□□□ 1.44
HDGFL3-203ENST00000563404 KCNH5Q8NCM2 988 aa24.02■■□□□ 1.44
HDGFL3-203ENST00000563404 KTN1Q86UP2 1357 aaKnown RBP24.02■■□□□ 1.44
HDGFL3-203ENST00000563404 RGPD5Q99666 1765 aa24.01■■□□□ 1.43
HDGFL3-203ENST00000563404 WNK3Q9BYP7 1800 aa24.01■■□□□ 1.43
HDGFL3-203ENST00000563404 C11orf95C9JLR9 678 aaPredicted RBP24■■□□□ 1.43
HDGFL3-203ENST00000563404 MARCH10Q8NA82 808 aaPredicted RBP24■■□□□ 1.43
HDGFL3-203ENST00000563404 SBF2Q86WG5 1849 aa24■■□□□ 1.43
HDGFL3-203ENST00000563404 NBPF14Q5TI25 921 aa23.99■■□□□ 1.43
HDGFL3-203ENST00000563404 SBNO2Q9Y2G9 1366 aa23.99■■□□□ 1.43
HDGFL3-203ENST00000563404 CARD10Q9BWT7 1032 aa23.98■■□□□ 1.43
HDGFL3-203ENST00000563404 CD163L1Q9NR16 1453 aa23.98■■□□□ 1.43
HDGFL3-203ENST00000563404 MON2Q7Z3U7 1717 aa23.98■■□□□ 1.43
HDGFL3-203ENST00000563404 PLSCR1O15162 318 aa23.96■■□□□ 1.43
HDGFL3-203ENST00000563404 USP31Q70CQ4 1352 aa23.95■■□□□ 1.42
HDGFL3-203ENST00000563404 CSB-PGBD3P0DP91 1061 aa23.95■■□□□ 1.42
HDGFL3-203ENST00000563404 SUGP2Q8IX01 1082 aaKnown RBP eCLIP23.95■■□□□ 1.42
HDGFL3-203ENST00000563404 CDCA7Q9BWT1 371 aaPredicted RBP23.95■■□□□ 1.42
HDGFL3-203ENST00000563404 CARD11Q9BXL7 1154 aa23.95■■□□□ 1.42
HDGFL3-203ENST00000563404 BCL11BQ9C0K0 894 aaPredicted RBP23.95■■□□□ 1.42
HDGFL3-203ENST00000563404 BCL9O00512 1426 aa23.94■■□□□ 1.42
HDGFL3-203ENST00000563404 RGPD3A6NKT7 1758 aaPredicted RBP23.94■■□□□ 1.42
HDGFL3-203ENST00000563404 RGPD4Q7Z3J3 1758 aa23.94■■□□□ 1.42
HDGFL3-203ENST00000563404 NME9Q86XW9 330 aa23.93■■□□□ 1.42
HDGFL3-203ENST00000563404 PROM2Q8N271 834 aa23.92■■□□□ 1.42
HDGFL3-203ENST00000563404 ANO8Q9HCE9 1232 aaPredicted RBP23.92■■□□□ 1.42
HDGFL3-203ENST00000563404 ABCC6O95255 1503 aa23.92■■□□□ 1.42
HDGFL3-203ENST00000563404 USP54Q70EL1 1684 aa23.92■■□□□ 1.42
HDGFL3-203ENST00000563404 SLC12A5Q9H2X9 1139 aa23.91■■□□□ 1.42
HDGFL3-203ENST00000563404 CCDC7Q96M83 1385 aa23.9■■□□□ 1.42
HDGFL3-203ENST00000563404 TMC1Q8TDI8 760 aa23.89■■□□□ 1.41
HDGFL3-203ENST00000563404 EXOC5O00471 708 aa23.88■■□□□ 1.41
HDGFL3-203ENST00000563404 KCNQ2O43526 872 aa23.87■■□□□ 1.41
HDGFL3-203ENST00000563404 SPON1Q9HCB6 807 aa23.87■■□□□ 1.41
HDGFL3-203ENST00000563404 ERBB3P21860 1342 aa23.86■■□□□ 1.41
HDGFL3-203ENST00000563404 TNS2Q63HR2 1409 aa23.86■■□□□ 1.41
HDGFL3-203ENST00000563404 PDGFDQ9GZP0 370 aaPredicted RBP23.86■■□□□ 1.41
HDGFL3-203ENST00000563404 HDGFL2Q7Z4V5 671 aaPredicted RBP23.85■■□□□ 1.41
HDGFL3-203ENST00000563404 A0A1W2PP64 1363 aa23.85■■□□□ 1.41
HDGFL3-203ENST00000563404 TONSLQ96HA7 1378 aa23.85■■□□□ 1.41
HDGFL3-203ENST00000563404 EDC4Q6P2E9 1401 aaKnown RBP23.84■■□□□ 1.41
HDGFL3-203ENST00000563404 LTN1O94822 1766 aa23.84■■□□□ 1.41
HDGFL3-203ENST00000563404 CASZ1Q86V15 1759 aa23.84■■□□□ 1.41
HDGFL3-203ENST00000563404 NLRP2Q9NX02 1062 aa23.83■■□□□ 1.41
HDGFL3-203ENST00000563404 TXNRD1Q16881 649 aa23.81■■□□□ 1.4
HDGFL3-203ENST00000563404 ANKRD24Q8TF21 1146 aa23.81■■□□□ 1.4
HDGFL3-203ENST00000563404 PUS7Q96PZ0 661 aaKnown RBP23.81■■□□□ 1.4
HDGFL3-203ENST00000563404 TESK2Q96S53 571 aa23.81■■□□□ 1.4
HDGFL3-203ENST00000563404 PPP1R1BQ9UD71 204 aaPredicted RBP23.8■■□□□ 1.4
HDGFL3-203ENST00000563404 ACSBG1Q96GR2 724 aa23.79■■□□□ 1.4
HDGFL3-203ENST00000563404 TERF2IPQ9NYB0 399 aa23.79■■□□□ 1.4
HDGFL3-203ENST00000563404 IL2RBP14784 551 aa23.78■■□□□ 1.4
HDGFL3-203ENST00000563404 NHSQ6T4R5 1651 aa23.78■■□□□ 1.4
HDGFL3-203ENST00000563404 ST20-MTHFSA0A0A6YYL1 179 aa23.77■■□□□ 1.4
HDGFL3-203ENST00000563404 ZBTB7AO95365 584 aa23.76■■□□□ 1.39
HDGFL3-203ENST00000563404 NINLQ9Y2I6 1382 aa23.76■■□□□ 1.39
HDGFL3-203ENST00000563404 SLC15A2Q16348 729 aa23.75■■□□□ 1.39
HDGFL3-203ENST00000563404 PTGER2P43116 358 aa23.74■■□□□ 1.39
HDGFL3-203ENST00000563404 IP6K1Q92551 441 aa23.74■■□□□ 1.39
HDGFL3-203ENST00000563404 STK32BQ9NY57 414 aa23.74■■□□□ 1.39
HDGFL3-203ENST00000563404 FBLN1P23142 703 aa23.72■■□□□ 1.39
HDGFL3-203ENST00000563404 ATF5Q9Y2D1 282 aaPredicted RBP23.71■■□□□ 1.39
HDGFL3-203ENST00000563404 LTV1Q96GA3 475 aaPredicted RBP23.7■■□□□ 1.38
HDGFL3-203ENST00000563404 MYOM1P52179 1685 aa23.7■■□□□ 1.38
HDGFL3-203ENST00000563404 PAPPAQ13219 1627 aa23.7■■□□□ 1.38
HDGFL3-203ENST00000563404 MAP3K19Q56UN5 1328 aa23.69■■□□□ 1.38
HDGFL3-203ENST00000563404 BTAF1O14981 1849 aa23.69■■□□□ 1.38
HDGFL3-203ENST00000563404 YY1P25490 414 aa23.68■■□□□ 1.38
HDGFL3-203ENST00000563404 COG3Q96JB2 828 aa23.67■■□□□ 1.38
HDGFL3-203ENST00000563404 HOXC9P31274 260 aa23.66■■□□□ 1.38
HDGFL3-203ENST00000563404 LRRC4BQ9NT99 713 aa23.66■■□□□ 1.38
HDGFL3-203ENST00000563404 FAM208AQ9UK61 1670 aaKnown RBP23.65■■□□□ 1.38
HDGFL3-203ENST00000563404 DDX54Q8TDD1 881 aaKnown RBP23.65■■□□□ 1.38
HDGFL3-203ENST00000563404 SGIP1Q9BQI5 828 aa23.65■■□□□ 1.38
HDGFL3-203ENST00000563404 ANKRD36BQ8N2N9 1353 aa23.65■■□□□ 1.38
HDGFL3-203ENST00000563404 ZNF827Q17R98 1081 aa23.64■■□□□ 1.37
HDGFL3-203ENST00000563404 MTFR1LQ9H019 292 aa23.64■■□□□ 1.37
HDGFL3-203ENST00000563404 RGPD2P0DJD1 1756 aa23.62■■□□□ 1.37
HDGFL3-203ENST00000563404 SLC24A1O60721 1099 aa23.61■■□□□ 1.37
HDGFL3-203ENST00000563404 AMPHP49418 695 aa23.61■■□□□ 1.37
HDGFL3-203ENST00000563404 KAT6BQ8WYB5 2073 aa23.6■■□□□ 1.37
HDGFL3-203ENST00000563404 FYB1O15117 783 aa23.6■■□□□ 1.37
HDGFL3-203ENST00000563404 RRS1Q15050 365 aaKnown RBP23.6■■□□□ 1.37
HDGFL3-203ENST00000563404 FHDC1Q9C0D6 1143 aaPredicted RBP23.6■■□□□ 1.37
HDGFL3-203ENST00000563404 UTRNP46939 3433 aa23.6■■□□□ 1.37
HDGFL3-203ENST00000563404 MEGF6O75095 1541 aa23.59■■□□□ 1.37
HDGFL3-203ENST00000563404 SHANK3Q9BYB0 1731 aa23.59■■□□□ 1.37
HDGFL3-203ENST00000563404 DCAF8L1A6NGE4 600 aa23.59■■□□□ 1.37
HDGFL3-203ENST00000563404 SYT17Q9BSW7 474 aa23.59■■□□□ 1.37
HDGFL3-203ENST00000563404 GGNBP2Q9H3C7 697 aa23.59■■□□□ 1.37
HDGFL3-203ENST00000563404 USP47Q96K76 1375 aa23.59■■□□□ 1.37
HDGFL3-203ENST00000563404 NSD2O96028 1365 aa23.58■■□□□ 1.37
HDGFL3-203ENST00000563404 AKT1S1Q96B36 256 aa23.58■■□□□ 1.37
HDGFL3-203ENST00000563404 RTL1A6NKG5 1358 aa23.57■■□□□ 1.36
HDGFL3-203ENST00000563404 PRIM1P49642 420 aaKnown RBP23.57■■□□□ 1.36
HDGFL3-203ENST00000563404 TMF1P82094 1093 aa23.57■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms