RNA–Protein interactions for RNA: ENST00000562668.1

SMG1-206, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 3

Gene SMG1, Length 449 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-206ENST00000562668 GPSM3Q9Y4H4 160 aa9.98□□□□□ -0.81
SMG1-206ENST00000562668 PTK2Q05397 1052 aa9.97□□□□□ -0.81
SMG1-206ENST00000562668 ZBTB33Q86T24 672 aa9.97□□□□□ -0.81
SMG1-206ENST00000562668 CCDC116Q8IYX3 515 aa9.97□□□□□ -0.81
SMG1-206ENST00000562668 MEIOBQ8N635 442 aa9.97□□□□□ -0.81
SMG1-206ENST00000562668 OCSTAMPQ9BR26 566 aa9.97□□□□□ -0.81
SMG1-206ENST00000562668 CDV3Q9UKY7 258 aaKnown RBP9.97□□□□□ -0.81
SMG1-206ENST00000562668 EMILIN1Q9Y6C2 1016 aa9.96□□□□□ -0.82
SMG1-206ENST00000562668 TMEM259Q4ZIN3 620 aa9.95□□□□□ -0.82
SMG1-206ENST00000562668 LINC00528Q8N1L1 170 aa9.94□□□□□ -0.82
SMG1-206ENST00000562668 ADAM32Q8TC27 787 aa9.94□□□□□ -0.82
SMG1-206ENST00000562668 LCE2CQ5TA81 110 aa9.93□□□□□ -0.82
SMG1-206ENST00000562668 KCTD15Q96SI1 283 aaPredicted RBP9.93□□□□□ -0.82
SMG1-206ENST00000562668 TRIM34Q9BYJ4 488 aa9.93□□□□□ -0.82
SMG1-206ENST00000562668 NXF1Q9UBU9 619 aaKnown RBP9.93□□□□□ -0.82
SMG1-206ENST00000562668 UPP2O95045 317 aa9.92□□□□□ -0.82
SMG1-206ENST00000562668 C6orf118Q5T5N4 469 aa9.92□□□□□ -0.82
SMG1-206ENST00000562668 PPP1R26Q5T8A7 1209 aaPredicted RBP9.92□□□□□ -0.82
SMG1-206ENST00000562668 PGPEP1Q9NXJ5 209 aa9.92□□□□□ -0.82
SMG1-206ENST00000562668 BMP2P12643 396 aa9.9□□□□□ -0.82
SMG1-206ENST00000562668 NBPF20Q3BBV1 942 aa9.9□□□□□ -0.82
SMG1-206ENST00000562668 INTS6LQ5JSJ4 861 aaKnown RBP9.9□□□□□ -0.82
SMG1-206ENST00000562668 NPAS3Q8IXF0 933 aa9.9□□□□□ -0.82
SMG1-206ENST00000562668 SLC16A10Q8TF71 515 aa9.9□□□□□ -0.82
SMG1-206ENST00000562668 SOBPA7XYQ1 873 aa9.89□□□□□ -0.83
SMG1-206ENST00000562668 WIPF1O43516 503 aa9.89□□□□□ -0.83
SMG1-206ENST00000562668 DHX9Q08211 1270 aaKnown RBP9.89□□□□□ -0.83
SMG1-206ENST00000562668 GJD4Q96KN9 370 aaPredicted RBP9.88□□□□□ -0.83
SMG1-206ENST00000562668 TSEN34Q9BSV6 310 aaKnown RBP9.88□□□□□ -0.83
SMG1-206ENST00000562668 H3BM21 787 aa9.87□□□□□ -0.83
SMG1-206ENST00000562668 MAN1A2O60476 641 aa9.87□□□□□ -0.83
SMG1-206ENST00000562668 VEGFBP49765 207 aa9.86□□□□□ -0.83
SMG1-206ENST00000562668 CBLBQ13191 982 aa9.86□□□□□ -0.83
SMG1-206ENST00000562668 Q6ZVU0 165 aa9.86□□□□□ -0.83
SMG1-206ENST00000562668 DZIP3Q86Y13 1208 aaKnown RBP9.86□□□□□ -0.83
SMG1-206ENST00000562668 SOS2Q07890 1332 aaPredicted RBP9.85□□□□□ -0.83
SMG1-206ENST00000562668 SOCS7O14512 581 aa9.84□□□□□ -0.83
SMG1-206ENST00000562668 BANK1Q8NDB2 785 aa9.84□□□□□ -0.83
SMG1-206ENST00000562668 IRF7Q92985 503 aa9.84□□□□□ -0.83
SMG1-206ENST00000562668 ZBBXA8MT70 800 aa9.83□□□□□ -0.84
SMG1-206ENST00000562668 ESPNB1AK53 854 aa9.83□□□□□ -0.84
SMG1-206ENST00000562668 RAB15P59190 212 aa9.83□□□□□ -0.84
SMG1-206ENST00000562668 DNMT3LQ9UJW3 386 aa9.83□□□□□ -0.84
SMG1-206ENST00000562668 INSM1Q01101 510 aaPredicted RBP9.82□□□□□ -0.84
SMG1-206ENST00000562668 TTLL8A6PVC2 850 aa9.81□□□□□ -0.84
SMG1-206ENST00000562668 SPINT1O43278 529 aa9.81□□□□□ -0.84
SMG1-206ENST00000562668 FBXO45P0C2W1 286 aa9.81□□□□□ -0.84
SMG1-206ENST00000562668 ZNF784Q8NCA9 323 aaPredicted RBP9.81□□□□□ -0.84
SMG1-206ENST00000562668 MTMR14Q8NCE2 650 aa9.81□□□□□ -0.84
SMG1-206ENST00000562668 ERBB4Q15303 1308 aa9.81□□□□□ -0.84
SMG1-206ENST00000562668 GMPRP36959 345 aa9.8□□□□□ -0.84
SMG1-206ENST00000562668 TMPRSS4Q9NRS4 437 aa9.8□□□□□ -0.84
SMG1-206ENST00000562668 PCDHB9Q9Y5E1 797 aa9.8□□□□□ -0.84
SMG1-206ENST00000562668 ERVH48-1M5A8F1 160 aa9.79□□□□□ -0.84
SMG1-206ENST00000562668 APBB1O00213 710 aa9.79□□□□□ -0.84
SMG1-206ENST00000562668 GPR37L1O60883 481 aa9.79□□□□□ -0.84
SMG1-206ENST00000562668 SEPT12Q8IYM1 358 aa9.79□□□□□ -0.84
SMG1-206ENST00000562668 AGBL1Q96MI9 1066 aa9.79□□□□□ -0.84
SMG1-206ENST00000562668 NDUFB9Q9Y6M9 179 aa9.79□□□□□ -0.84
SMG1-206ENST00000562668 VSIG8P0DPA2 414 aa9.78□□□□□ -0.84
SMG1-206ENST00000562668 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.78□□□□□ -0.844e-8■■□□□ 11.4
SMG1-206ENST00000562668 ADH1AP07327 375 aa9.77□□□□□ -0.85
SMG1-206ENST00000562668 RELBQ01201 579 aa9.77□□□□□ -0.85
SMG1-206ENST00000562668 STK17AQ9UEE5 414 aa9.77□□□□□ -0.85
SMG1-206ENST00000562668 LILRA1O75019 489 aa9.76□□□□□ -0.85
SMG1-206ENST00000562668 NR1H3Q13133 447 aa9.76□□□□□ -0.85
SMG1-206ENST00000562668 SNRKQ9NRH2 765 aa9.76□□□□□ -0.85
SMG1-206ENST00000562668 PPFIA3O75145 1194 aa9.75□□□□□ -0.85
SMG1-206ENST00000562668 FIGNL2A6NMB9 653 aa9.74□□□□□ -0.85
SMG1-206ENST00000562668 CTSOP43234 321 aaPredicted RBP9.74□□□□□ -0.85
SMG1-206ENST00000562668 ZNF592Q92610 1267 aa9.74□□□□□ -0.85
SMG1-206ENST00000562668 TRIM52Q96A61 297 aa9.74□□□□□ -0.85
SMG1-206ENST00000562668 INSM2Q96T92 566 aaPredicted RBP9.74□□□□□ -0.85
SMG1-206ENST00000562668 CYLDQ9NQC7 956 aa9.74□□□□□ -0.85
SMG1-206ENST00000562668 GIGYF1O75420 1035 aaPredicted RBP9.73□□□□□ -0.85
SMG1-206ENST00000562668 POLMQ9NP87 494 aaPredicted RBP9.73□□□□□ -0.85
SMG1-206ENST00000562668 ZNF330Q9Y3S2 320 aaPredicted RBP9.73□□□□□ -0.85
SMG1-206ENST00000562668 ADD1P35611 737 aaKnown RBP9.72□□□□□ -0.85
SMG1-206ENST00000562668 MCCD1P59942 119 aaPredicted RBP9.72□□□□□ -0.85
SMG1-206ENST00000562668 PTSQ03393 145 aa9.72□□□□□ -0.85
SMG1-206ENST00000562668 CCDC125Q86Z20 511 aa9.72□□□□□ -0.85
SMG1-206ENST00000562668 ZNF395Q9H8N7 513 aaPredicted RBP9.72□□□□□ -0.85
SMG1-206ENST00000562668 PTGIRP43119 386 aa9.71□□□□□ -0.86
SMG1-206ENST00000562668 RNF217Q8TC41 542 aa9.71□□□□□ -0.86
SMG1-206ENST00000562668 RNF20Q5VTR2 975 aa9.7□□□□□ -0.86
SMG1-206ENST00000562668 KDF1Q8NAX2 398 aaPredicted RBP9.7□□□□□ -0.86
SMG1-206ENST00000562668 FOXD4L5Q5VV16 416 aaPredicted RBP9.69□□□□□ -0.86
SMG1-206ENST00000562668 ERVK-9P63128 1117 aa9.68□□□□□ -0.86
SMG1-206ENST00000562668 TBC1D2BQ9UPU7 963 aa9.68□□□□□ -0.86
SMG1-206ENST00000562668 PRKCSHP14314 528 aaPredicted RBP9.67□□□□□ -0.86
SMG1-206ENST00000562668 LORP23490 312 aaPredicted RBP9.67□□□□□ -0.86
SMG1-206ENST00000562668 CCDC155Q8N6L0 562 aa9.67□□□□□ -0.86
SMG1-206ENST00000562668 ZSCAN1Q8NBB4 408 aa9.67□□□□□ -0.86
SMG1-206ENST00000562668 SLC35F4A4IF30 521 aa9.66□□□□□ -0.86
SMG1-206ENST00000562668 ATP5J2-PTCD1G3V325 749 aa9.66□□□□□ -0.86
SMG1-206ENST00000562668 CC2D2BQ6DHV5 1058 aa9.66□□□□□ -0.86
SMG1-206ENST00000562668 PRM3Q9NNZ6 103 aa9.65□□□□□ -0.86
SMG1-206ENST00000562668 PCDHB11Q9Y5F2 797 aa9.65□□□□□ -0.86
SMG1-206ENST00000562668 CCDC180Q9P1Z9 1646 aa9.64□□□□□ -0.87
SMG1-206ENST00000562668 FAM181BA6NEQ2 426 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms