RNA–Protein interactions for RNA: ENST00000562662.1

VPS39-206, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 526 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-206ENST00000562662 U2SURPO15042 1029 aaKnown RBP18.05■□□□□ 0.48
VPS39-206ENST00000562662 U2AF1L5P0DN76 240 aaPredicted RBP18.05■□□□□ 0.48
VPS39-206ENST00000562662 U2AF1Q01081 240 aaKnown RBP eCLIP18.05■□□□□ 0.48
VPS39-206ENST00000562662 ARHGEF25Q86VW2 580 aa18.05■□□□□ 0.48
VPS39-206ENST00000562662 RGPD2P0DJD1 1756 aa18.04■□□□□ 0.48
VPS39-206ENST00000562662 UBAP1LF5GYI3 381 aa18.04■□□□□ 0.48
VPS39-206ENST00000562662 CENPBP07199 599 aaPredicted RBP18.04■□□□□ 0.48
VPS39-206ENST00000562662 CCDC146Q8IYE0 955 aa18.04■□□□□ 0.48
VPS39-206ENST00000562662 IP6K1Q92551 441 aa18.04■□□□□ 0.48
VPS39-206ENST00000562662 PLEKHG5O94827 1062 aa18.03■□□□□ 0.48
VPS39-206ENST00000562662 CABLES1Q8TDN4 633 aa18.03■□□□□ 0.48
VPS39-206ENST00000562662 CPDO75976 1380 aa18.02■□□□□ 0.47
VPS39-206ENST00000562662 SENP3-EIF4A1A0A087X0R7 540 aa18.01■□□□□ 0.47
VPS39-206ENST00000562662 PIP4K2BP78356 416 aa18.01■□□□□ 0.47
VPS39-206ENST00000562662 LRRC59Q96AG4 307 aaKnown RBP18.01■□□□□ 0.47
VPS39-206ENST00000562662 RUNDC1Q96C34 613 aa18.01■□□□□ 0.47
VPS39-206ENST00000562662 CAMTA1Q9Y6Y1 1673 aa18.01■□□□□ 0.47
VPS39-206ENST00000562662 PLEKHF1Q96S99 279 aa18■□□□□ 0.47
VPS39-206ENST00000562662 RSPH6AQ9H0K4 717 aa18■□□□□ 0.47
VPS39-206ENST00000562662 LMO7Q8WWI1 1683 aa17.99■□□□□ 0.47
VPS39-206ENST00000562662 ZC3H6P61129 1189 aaKnown RBP17.99■□□□□ 0.47
VPS39-206ENST00000562662 DLG5Q8TDM6 1919 aa17.98■□□□□ 0.47
VPS39-206ENST00000562662 ZBTB7CA1YPR0 619 aa17.98■□□□□ 0.47
VPS39-206ENST00000562662 APAF1O14727 1248 aa17.98■□□□□ 0.47
VPS39-206ENST00000562662 FCHSD2O94868 740 aa17.98■□□□□ 0.47
VPS39-206ENST00000562662 FAM208AQ9UK61 1670 aaKnown RBP17.98■□□□□ 0.47
VPS39-206ENST00000562662 IGSF1Q8N6C5 1336 aa17.98■□□□□ 0.47
VPS39-206ENST00000562662 KIAA0232Q92628 1395 aa17.97■□□□□ 0.47
VPS39-206ENST00000562662 HMOX1P09601 288 aa17.97■□□□□ 0.47
VPS39-206ENST00000562662 KDRP35968 1356 aa17.96■□□□□ 0.47
VPS39-206ENST00000562662 EYA1Q99502 592 aa17.96■□□□□ 0.47
VPS39-206ENST00000562662 PNNQ9H307 717 aaKnown RBP17.96■□□□□ 0.47
VPS39-206ENST00000562662 PRKAR2BP31323 418 aa17.95■□□□□ 0.46
VPS39-206ENST00000562662 TCP11L2Q8N4U5 519 aa17.95■□□□□ 0.46
VPS39-206ENST00000562662 AXIN2Q9Y2T1 843 aa17.95■□□□□ 0.46
VPS39-206ENST00000562662 AEBP1Q8IUX7 1158 aa17.94■□□□□ 0.46
VPS39-206ENST00000562662 LTV1Q96GA3 475 aaPredicted RBP17.94■□□□□ 0.46
VPS39-206ENST00000562662 SALL2Q9Y467 1007 aaPredicted RBP17.94■□□□□ 0.46
VPS39-206ENST00000562662 NCAPD2Q15021 1401 aa17.94■□□□□ 0.46
VPS39-206ENST00000562662 ZNF521Q96K83 1311 aa17.94■□□□□ 0.46
VPS39-206ENST00000562662 SULT6B1Q6IMI4 303 aa17.93■□□□□ 0.46
VPS39-206ENST00000562662 NGEFQ8N5V2 710 aa17.93■□□□□ 0.46
VPS39-206ENST00000562662 COL14A1Q05707 1796 aaKnown RBP17.93■□□□□ 0.46
VPS39-206ENST00000562662 MAPK8IP3Q9UPT6 1336 aa17.93■□□□□ 0.46
VPS39-206ENST00000562662 CHRNA2Q15822 529 aa17.92■□□□□ 0.46
VPS39-206ENST00000562662 NCBP3Q53F19 620 aaKnown RBP17.92■□□□□ 0.46
VPS39-206ENST00000562662 ANKRD24Q8TF21 1146 aa17.92■□□□□ 0.46
VPS39-206ENST00000562662 HAP1P54257 671 aaPredicted RBP17.91■□□□□ 0.46
VPS39-206ENST00000562662 ERBB3P21860 1342 aa17.91■□□□□ 0.46
VPS39-206ENST00000562662 TMPOP42166 694 aaKnown RBP17.9■□□□□ 0.46
VPS39-206ENST00000562662 NBPF6Q5VWK0 638 aa17.9■□□□□ 0.46
VPS39-206ENST00000562662 PHACTR3Q96KR7 559 aa17.9■□□□□ 0.46
VPS39-206ENST00000562662 NBPF4Q96M43 638 aa17.9■□□□□ 0.46
VPS39-206ENST00000562662 PHF23Q9BUL5 403 aaPredicted RBP17.9■□□□□ 0.46
VPS39-206ENST00000562662 PRDM11Q9NQV5 511 aa17.9■□□□□ 0.46
VPS39-206ENST00000562662 RRP7AQ9Y3A4 280 aaKnown RBP17.9■□□□□ 0.46
VPS39-206ENST00000562662 CCDC27Q2M243 656 aa17.89■□□□□ 0.45
VPS39-206ENST00000562662 PLCH1Q4KWH8 1693 aa17.89■□□□□ 0.45
VPS39-206ENST00000562662 PDE3BQ13370 1112 aa17.88■□□□□ 0.45
VPS39-206ENST00000562662 COL5A2P05997 1499 aaPredicted RBP17.88■□□□□ 0.45
VPS39-206ENST00000562662 NEFMP07197 916 aa17.87■□□□□ 0.45
VPS39-206ENST00000562662 NEUROD2Q15784 382 aa17.87■□□□□ 0.45
VPS39-206ENST00000562662 NFE2L2Q16236 605 aa17.87■□□□□ 0.45
VPS39-206ENST00000562662 USHBP1Q8N6Y0 703 aa17.87■□□□□ 0.45
VPS39-206ENST00000562662 WWC1Q8IX03 1113 aa17.86■□□□□ 0.45
VPS39-206ENST00000562662 JCADQ9P266 1359 aa17.86■□□□□ 0.45
VPS39-206ENST00000562662 FAM83GA6ND36 823 aa17.85■□□□□ 0.45
VPS39-206ENST00000562662 NRAPQ86VF7 1730 aa17.85■□□□□ 0.45
VPS39-206ENST00000562662 TRIM35Q9UPQ4 493 aa17.85■□□□□ 0.45
VPS39-206ENST00000562662 VIRMAQ69YN4 1812 aaKnown RBP17.84■□□□□ 0.45
VPS39-206ENST00000562662 RIPK4P57078 832 aa17.84■□□□□ 0.45
VPS39-206ENST00000562662 CDCA7LQ96GN5 454 aa17.84■□□□□ 0.45
VPS39-206ENST00000562662 GOLGA2Q08379 1002 aa17.83■□□□□ 0.44
VPS39-206ENST00000562662 NWD2Q9ULI1 1742 aa17.83■□□□□ 0.44
VPS39-206ENST00000562662 WDR17Q8IZU2 1322 aa17.82■□□□□ 0.44
VPS39-206ENST00000562662 PKD1L3Q7Z443 1732 aa17.81■□□□□ 0.44
VPS39-206ENST00000562662 PARP4Q9UKK3 1724 aaKnown RBP17.81■□□□□ 0.44
VPS39-206ENST00000562662 CSB-PGBD3P0DP91 1061 aa17.81■□□□□ 0.44
VPS39-206ENST00000562662 WDR63Q8IWG1 891 aa17.81■□□□□ 0.44
VPS39-206ENST00000562662 HSPA1LP34931 641 aa17.8■□□□□ 0.44
VPS39-206ENST00000562662 SLFN5Q08AF3 891 aa17.8■□□□□ 0.44
VPS39-206ENST00000562662 MTHFSDQ2M296 383 aaKnown RBP17.8■□□□□ 0.44
VPS39-206ENST00000562662 TRMT2AQ8IZ69 625 aaKnown RBP17.8■□□□□ 0.44
VPS39-206ENST00000562662 SPINK5Q9NQ38 1064 aaPredicted RBP17.8■□□□□ 0.44
VPS39-206ENST00000562662 NLRP2Q9NX02 1062 aa17.8■□□□□ 0.44
VPS39-206ENST00000562662 LRRC37A3O60309 1634 aa17.8■□□□□ 0.44
VPS39-206ENST00000562662 WNK3Q9BYP7 1800 aa17.79■□□□□ 0.44
VPS39-206ENST00000562662 PLEKHG2Q9H7P9 1386 aa17.79■□□□□ 0.44
VPS39-206ENST00000562662 MEGF6O75095 1541 aa17.78■□□□□ 0.44
VPS39-206ENST00000562662 DUSP27Q5VZP5 1158 aa17.78■□□□□ 0.44
VPS39-206ENST00000562662 GAS2L2Q8NHY3 880 aa17.78■□□□□ 0.44
VPS39-206ENST00000562662 BTG4Q9NY30 223 aa17.78■□□□□ 0.44
VPS39-206ENST00000562662 LRP6O75581 1613 aa17.77■□□□□ 0.44
VPS39-206ENST00000562662 NUTM2BA6NNL0 878 aaPredicted RBP17.77■□□□□ 0.44
VPS39-206ENST00000562662 NUTM2EB1AL46 878 aaPredicted RBP17.77■□□□□ 0.44
VPS39-206ENST00000562662 E9PSI1 815 aa17.77■□□□□ 0.44
VPS39-206ENST00000562662 ADAMTS2O95450 1211 aa17.77■□□□□ 0.44
VPS39-206ENST00000562662 LMOD3Q0VAK6 560 aa17.77■□□□□ 0.44
VPS39-206ENST00000562662 NUTM2AQ8IVF1 878 aaPredicted RBP17.77■□□□□ 0.44
VPS39-206ENST00000562662 SLIT2O94813 1529 aa17.77■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms