RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 KCNQ2O43526 872 aa27.15■■□□□ 1.94
VPS35-202ENST00000561713 COL18A1P39060 1754 aa27.14■■□□□ 1.94
VPS35-202ENST00000561713 PLSCR1O15162 318 aa27.14■■□□□ 1.94
VPS35-202ENST00000561713 PPP1R1BQ9UD71 204 aaPredicted RBP27.14■■□□□ 1.94
VPS35-202ENST00000561713 RGPD5Q99666 1765 aa27.14■■□□□ 1.93
VPS35-202ENST00000561713 SBF2Q86WG5 1849 aa27.13■■□□□ 1.93
VPS35-202ENST00000561713 WNK3Q9BYP7 1800 aa27.13■■□□□ 1.93
VPS35-202ENST00000561713 WDR17Q8IZU2 1322 aa27.12■■□□□ 1.93
VPS35-202ENST00000561713 TONSLQ96HA7 1378 aa27.11■■□□□ 1.93
VPS35-202ENST00000561713 MARCH10Q8NA82 808 aaPredicted RBP27.11■■□□□ 1.93
VPS35-202ENST00000561713 BCL11BQ9C0K0 894 aaPredicted RBP27.11■■□□□ 1.93
VPS35-202ENST00000561713 ANO8Q9HCE9 1232 aaPredicted RBP27.11■■□□□ 1.93
VPS35-202ENST00000561713 RGPD3A6NKT7 1758 aaPredicted RBP27.1■■□□□ 1.93
VPS35-202ENST00000561713 RGPD4Q7Z3J3 1758 aa27.1■■□□□ 1.93
VPS35-202ENST00000561713 YY1P25490 414 aa27.1■■□□□ 1.93
VPS35-202ENST00000561713 CPSF1Q10570 1443 aaKnown RBP27.09■■□□□ 1.93
VPS35-202ENST00000561713 SOX12O15370 315 aa27.09■■□□□ 1.93
VPS35-202ENST00000561713 ARHGEF25Q86VW2 580 aa27.09■■□□□ 1.93
VPS35-202ENST00000561713 TTC21BQ7Z4L5 1316 aa27.09■■□□□ 1.93
VPS35-202ENST00000561713 PROM2Q8N271 834 aa27.07■■□□□ 1.92
VPS35-202ENST00000561713 ZNF692Q9BU19 519 aaPredicted RBP27.06■■□□□ 1.92
VPS35-202ENST00000561713 CDCA7Q9BWT1 371 aaPredicted RBP27.06■■□□□ 1.92
VPS35-202ENST00000561713 PDGFDQ9GZP0 370 aaPredicted RBP27.06■■□□□ 1.92
VPS35-202ENST00000561713 KCNH5Q8NCM2 988 aa27.05■■□□□ 1.92
VPS35-202ENST00000561713 CARD11Q9BXL7 1154 aa27.05■■□□□ 1.92
VPS35-202ENST00000561713 NINLQ9Y2I6 1382 aa27.05■■□□□ 1.92
VPS35-202ENST00000561713 CSB-PGBD3P0DP91 1061 aa27.04■■□□□ 1.92
VPS35-202ENST00000561713 CARD10Q9BWT7 1032 aa27.04■■□□□ 1.92
VPS35-202ENST00000561713 BCL9O00512 1426 aa27.03■■□□□ 1.92
VPS35-202ENST00000561713 CASZ1Q86V15 1759 aa27.02■■□□□ 1.92
VPS35-202ENST00000561713 NFAT5O94916 1531 aa27.02■■□□□ 1.92
VPS35-202ENST00000561713 SBNO2Q9Y2G9 1366 aa27.02■■□□□ 1.92
VPS35-202ENST00000561713 USP54Q70EL1 1684 aa27.01■■□□□ 1.92
VPS35-202ENST00000561713 LTN1O94822 1766 aa27.01■■□□□ 1.91
VPS35-202ENST00000561713 KTN1Q86UP2 1357 aaKnown RBP27■■□□□ 1.91
VPS35-202ENST00000561713 TTC21AQ8NDW8 1320 aa27■■□□□ 1.91
VPS35-202ENST00000561713 UTRNP46939 3433 aa27■■□□□ 1.91
VPS35-202ENST00000561713 CD163L1Q9NR16 1453 aa27■■□□□ 1.91
VPS35-202ENST00000561713 DCAF8L1A6NGE4 600 aa26.99■■□□□ 1.91
VPS35-202ENST00000561713 EXOC5O00471 708 aa26.99■■□□□ 1.91
VPS35-202ENST00000561713 ZBTB7AO95365 584 aa26.99■■□□□ 1.91
VPS35-202ENST00000561713 TXNRD1Q16881 649 aa26.97■■□□□ 1.91
VPS35-202ENST00000561713 TRIM26Q12899 539 aaPredicted RBP26.95■■□□□ 1.9
VPS35-202ENST00000561713 PTGER2P43116 358 aa26.94■■□□□ 1.9
VPS35-202ENST00000561713 ATF5Q9Y2D1 282 aaPredicted RBP26.94■■□□□ 1.9
VPS35-202ENST00000561713 CCDC7Q96M83 1385 aa26.94■■□□□ 1.9
VPS35-202ENST00000561713 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.93■■□□□ 1.9
VPS35-202ENST00000561713 STK32BQ9NY57 414 aa26.93■■□□□ 1.9
VPS35-202ENST00000561713 SLC15A2Q16348 729 aa26.92■■□□□ 1.9
VPS35-202ENST00000561713 TNS2Q63HR2 1409 aa26.91■■□□□ 1.9
VPS35-202ENST00000561713 TMC1Q8TDI8 760 aa26.91■■□□□ 1.9
VPS35-202ENST00000561713 MYOM1P52179 1685 aa26.91■■□□□ 1.9
VPS35-202ENST00000561713 ABCC6O95255 1503 aa26.9■■□□□ 1.9
VPS35-202ENST00000561713 NME9Q86XW9 330 aa26.89■■□□□ 1.9
VPS35-202ENST00000561713 ACSBG1Q96GR2 724 aa26.89■■□□□ 1.9
VPS35-202ENST00000561713 A0A1W2PP64 1363 aa26.88■■□□□ 1.89
VPS35-202ENST00000561713 NLRP2Q9NX02 1062 aa26.88■■□□□ 1.89
VPS35-202ENST00000561713 USP31Q70CQ4 1352 aa26.87■■□□□ 1.89
VPS35-202ENST00000561713 SLC12A5Q9H2X9 1139 aa26.87■■□□□ 1.89
VPS35-202ENST00000561713 ERBB3P21860 1342 aa26.87■■□□□ 1.89
VPS35-202ENST00000561713 NHSQ6T4R5 1651 aa26.85■■□□□ 1.89
VPS35-202ENST00000561713 EDC4Q6P2E9 1401 aaKnown RBP26.84■■□□□ 1.89
VPS35-202ENST00000561713 FHDC1Q9C0D6 1143 aaPredicted RBP26.84■■□□□ 1.89
VPS35-202ENST00000561713 IL2RBP14784 551 aa26.83■■□□□ 1.89
VPS35-202ENST00000561713 MTFR1LQ9H019 292 aa26.83■■□□□ 1.89
VPS35-202ENST00000561713 SYT17Q9BSW7 474 aa26.82■■□□□ 1.88
VPS35-202ENST00000561713 ST20-MTHFSA0A0A6YYL1 179 aa26.81■■□□□ 1.88
VPS35-202ENST00000561713 HDGFL2Q7Z4V5 671 aaPredicted RBP26.81■■□□□ 1.88
VPS35-202ENST00000561713 ANKRD24Q8TF21 1146 aa26.81■■□□□ 1.88
VPS35-202ENST00000561713 TESK2Q96S53 571 aa26.81■■□□□ 1.88
VPS35-202ENST00000561713 SGIP1Q9BQI5 828 aa26.81■■□□□ 1.88
VPS35-202ENST00000561713 PAPPAQ13219 1627 aa26.77■■□□□ 1.88
VPS35-202ENST00000561713 USP47Q96K76 1375 aa26.77■■□□□ 1.88
VPS35-202ENST00000561713 BTAF1O14981 1849 aa26.76■■□□□ 1.88
VPS35-202ENST00000561713 ZNF827Q17R98 1081 aa26.75■■□□□ 1.87
VPS35-202ENST00000561713 LRRC4BQ9NT99 713 aa26.75■■□□□ 1.87
VPS35-202ENST00000561713 TERF2IPQ9NYB0 399 aa26.75■■□□□ 1.87
VPS35-202ENST00000561713 RGPD2P0DJD1 1756 aa26.74■■□□□ 1.87
VPS35-202ENST00000561713 ZNF784Q8NCA9 323 aaPredicted RBP26.74■■□□□ 1.87
VPS35-202ENST00000561713 ARXQ96QS3 562 aa26.74■■□□□ 1.87
VPS35-202ENST00000561713 KIF20BQ96Q89 1820 aa26.74■■□□□ 1.87
VPS35-202ENST00000561713 FAM208AQ9UK61 1670 aaKnown RBP26.73■■□□□ 1.87
VPS35-202ENST00000561713 GOLGB1Q14789 3259 aaKnown RBP26.7■■□□□ 1.87
VPS35-202ENST00000561713 DDX54Q8TDD1 881 aaKnown RBP26.7■■□□□ 1.86
VPS35-202ENST00000561713 KAT6BQ8WYB5 2073 aa26.7■■□□□ 1.86
VPS35-202ENST00000561713 IP6K1Q92551 441 aa26.69■■□□□ 1.86
VPS35-202ENST00000561713 LTV1Q96GA3 475 aaPredicted RBP26.69■■□□□ 1.86
VPS35-202ENST00000561713 PUS7Q96PZ0 661 aaKnown RBP26.68■■□□□ 1.86
VPS35-202ENST00000561713 AKT1S1Q96B36 256 aa26.67■■□□□ 1.86
VPS35-202ENST00000561713 ANKRD36BQ8N2N9 1353 aa26.66■■□□□ 1.86
VPS35-202ENST00000561713 MAP3K5Q99683 1374 aa26.65■■□□□ 1.86
VPS35-202ENST00000561713 FBLN1P23142 703 aa26.63■■□□□ 1.85
VPS35-202ENST00000561713 KCNQ4P56696 695 aa26.63■■□□□ 1.85
VPS35-202ENST00000561713 SLC27A3Q5K4L6 730 aa26.63■■□□□ 1.85
VPS35-202ENST00000561713 PCGF6Q9BYE7 350 aa26.63■■□□□ 1.85
VPS35-202ENST00000561713 SHANK3Q9BYB0 1731 aa26.62■■□□□ 1.85
VPS35-202ENST00000561713 SYTL4Q96C24 671 aaPredicted RBP26.62■■□□□ 1.85
VPS35-202ENST00000561713 CHD4Q14839 1912 aa26.61■■□□□ 1.85
VPS35-202ENST00000561713 PRIM1P49642 420 aaKnown RBP26.61■■□□□ 1.85
VPS35-202ENST00000561713 MAP3K19Q56UN5 1328 aa26.61■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms