RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 CCDC116Q8IYX3 515 aa9.91□□□□□ -0.82
VPS13C-210ENST00000561258 EMILIN1Q9Y6C2 1016 aa9.9□□□□□ -0.82
VPS13C-210ENST00000561258 TSEN34Q9BSV6 310 aaKnown RBP9.89□□□□□ -0.83
VPS13C-210ENST00000561258 RSPH6AQ9H0K4 717 aa9.89□□□□□ -0.83
VPS13C-210ENST00000561258 CBLBQ13191 982 aa9.88□□□□□ -0.83
VPS13C-210ENST00000561258 C14orf37Q86TY3 774 aa9.88□□□□□ -0.83
VPS13C-210ENST00000561258 LRRN4Q8WUT4 740 aa9.88□□□□□ -0.83
VPS13C-210ENST00000561258 PPP1R26Q5T8A7 1209 aaPredicted RBP9.87□□□□□ -0.83
VPS13C-210ENST00000561258 FBXO31Q5XUX0 539 aaPredicted RBP9.87□□□□□ -0.83
VPS13C-210ENST00000561258 GPKOWQ92917 476 aaPredicted RBP eCLIP9.87□□□□□ -0.83
VPS13C-210ENST00000561258 FIGNL2A6NMB9 653 aa9.86□□□□□ -0.83
VPS13C-210ENST00000561258 TTLL8A6PVC2 850 aa9.86□□□□□ -0.83
VPS13C-210ENST00000561258 NEUROD2Q15784 382 aa9.86□□□□□ -0.83
VPS13C-210ENST00000561258 GPR161Q8N6U8 529 aaKnown RBP9.86□□□□□ -0.83
VPS13C-210ENST00000561258 ARXQ96QS3 562 aa9.85□□□□□ -0.83
VPS13C-210ENST00000561258 ARHGAP9Q9BRR9 750 aa9.85□□□□□ -0.83
VPS13C-210ENST00000561258 PTSQ03393 145 aa9.84□□□□□ -0.83
VPS13C-210ENST00000561258 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.84□□□□□ -0.83
VPS13C-210ENST00000561258 PDXDC2PQ6P474 469 aa9.84□□□□□ -0.83
VPS13C-210ENST00000561258 KRT76Q01546 638 aa9.83□□□□□ -0.84
VPS13C-210ENST00000561258 NR6A1Q15406 480 aa9.83□□□□□ -0.84
VPS13C-210ENST00000561258 KCTD15Q96SI1 283 aaPredicted RBP9.83□□□□□ -0.84
VPS13C-210ENST00000561258 PGPEP1Q9NXJ5 209 aa9.83□□□□□ -0.84
VPS13C-210ENST00000561258 FKBPLQ9UIM3 349 aa9.83□□□□□ -0.84
VPS13C-210ENST00000561258 Q6ZVU0 165 aa9.82□□□□□ -0.84
VPS13C-210ENST00000561258 PROCA1Q8NCQ7 364 aaPredicted RBP9.82□□□□□ -0.84
VPS13C-210ENST00000561258 SPINT1O43278 529 aa9.81□□□□□ -0.84
VPS13C-210ENST00000561258 ZBTB33Q86T24 672 aa9.81□□□□□ -0.84
VPS13C-210ENST00000561258 SLC10A4Q96EP9 437 aa9.81□□□□□ -0.84
VPS13C-210ENST00000561258 AGBL1Q96MI9 1066 aa9.81□□□□□ -0.84
VPS13C-210ENST00000561258 CNTNAP3BQ96NU0 1288 aa9.81□□□□□ -0.84
VPS13C-210ENST00000561258 OCSTAMPQ9BR26 566 aa9.81□□□□□ -0.84
VPS13C-210ENST00000561258 CNTNAP3Q9BZ76 1288 aa9.81□□□□□ -0.84
VPS13C-210ENST00000561258 SKIV2LQ15477 1246 aaKnown RBP9.79□□□□□ -0.84
VPS13C-210ENST00000561258 INTS6LQ5JSJ4 861 aaKnown RBP9.79□□□□□ -0.84
VPS13C-210ENST00000561258 RELBQ01201 579 aa9.78□□□□□ -0.84
VPS13C-210ENST00000561258 CCDC155Q8N6L0 562 aa9.78□□□□□ -0.84
VPS13C-210ENST00000561258 GPBP1L1Q9HC44 474 aaPredicted RBP9.78□□□□□ -0.84
VPS13C-210ENST00000561258 ATP1B4Q9UN42 357 aaPredicted RBP9.78□□□□□ -0.84
VPS13C-210ENST00000561258 CTSOP43234 321 aaPredicted RBP9.77□□□□□ -0.85
VPS13C-210ENST00000561258 EPS8L1Q8TE68 723 aa9.77□□□□□ -0.85
VPS13C-210ENST00000561258 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.77□□□□□ -0.85
VPS13C-210ENST00000561258 CDV3Q9UKY7 258 aaKnown RBP9.77□□□□□ -0.85
VPS13C-210ENST00000561258 AP1G2O75843 785 aa9.76□□□□□ -0.85
VPS13C-210ENST00000561258 SH3D19Q5HYK7 790 aa9.76□□□□□ -0.85
VPS13C-210ENST00000561258 ADAM32Q8TC27 787 aa9.76□□□□□ -0.85
VPS13C-210ENST00000561258 INSM2Q96T92 566 aaPredicted RBP9.76□□□□□ -0.85
VPS13C-210ENST00000561258 COL25A1Q9BXS0 654 aaPredicted RBP9.76□□□□□ -0.85
VPS13C-210ENST00000561258 FAM117AQ9C073 453 aa9.76□□□□□ -0.85
VPS13C-210ENST00000561258 ZC3H4Q9UPT8 1303 aaKnown RBP9.76□□□□□ -0.85
VPS13C-210ENST00000561258 SLC35F4A4IF30 521 aa9.75□□□□□ -0.85
VPS13C-210ENST00000561258 GSK3AP49840 483 aa9.75□□□□□ -0.85
VPS13C-210ENST00000561258 PTK2Q05397 1052 aa9.75□□□□□ -0.85
VPS13C-210ENST00000561258 DHX9Q08211 1270 aaKnown RBP9.75□□□□□ -0.85
VPS13C-210ENST00000561258 PPP2R2DQ66LE6 453 aa9.75□□□□□ -0.85
VPS13C-210ENST00000561258 KDM4CQ9H3R0 1056 aa9.75□□□□□ -0.85
VPS13C-210ENST00000561258 TMPRSS4Q9NRS4 437 aa9.75□□□□□ -0.85
VPS13C-210ENST00000561258 RAB15P59190 212 aa9.74□□□□□ -0.85
VPS13C-210ENST00000561258 KCNMA1Q12791 1236 aa9.74□□□□□ -0.85
VPS13C-210ENST00000561258 RNFT1Q5M7Z0 435 aa9.74□□□□□ -0.85
VPS13C-210ENST00000561258 NANOS1Q8WY41 292 aaKnown RBP9.74□□□□□ -0.85
VPS13C-210ENST00000561258 ZNF395Q9H8N7 513 aaPredicted RBP9.74□□□□□ -0.85
VPS13C-210ENST00000561258 VWA5B2Q8N398 1253 aa9.73□□□□□ -0.85
VPS13C-210ENST00000561258 HMX1Q9NP08 348 aaPredicted RBP9.73□□□□□ -0.85
VPS13C-210ENST00000561258 POLMQ9NP87 494 aaPredicted RBP9.72□□□□□ -0.85
VPS13C-210ENST00000561258 ADAMTS8Q9UP79 889 aa9.72□□□□□ -0.85
VPS13C-210ENST00000561258 CDC14CA4D256 554 aa9.71□□□□□ -0.86
VPS13C-210ENST00000561258 ITGA6P23229 1130 aa9.71□□□□□ -0.86
VPS13C-210ENST00000561258 KCTD17Q8N5Z5 321 aa9.71□□□□□ -0.86
VPS13C-210ENST00000561258 ZNF784Q8NCA9 323 aaPredicted RBP9.71□□□□□ -0.86
VPS13C-210ENST00000561258 GPSM3Q9Y4H4 160 aa9.71□□□□□ -0.86
VPS13C-210ENST00000561258 ZNF385CQ66K41 422 aaPredicted RBP9.7□□□□□ -0.86
VPS13C-210ENST00000561258 RNF217Q8TC41 542 aa9.7□□□□□ -0.86
VPS13C-210ENST00000561258 DDRGK1Q96HY6 314 aa9.7□□□□□ -0.86
VPS13C-210ENST00000561258 USP17L8P0C7I0 530 aa9.69□□□□□ -0.86
VPS13C-210ENST00000561258 ADD1P35611 737 aaKnown RBP9.69□□□□□ -0.86
VPS13C-210ENST00000561258 WHAMMQ8TF30 809 aa9.69□□□□□ -0.86
VPS13C-210ENST00000561258 SENP3-EIF4A1A0A087X0R7 540 aa9.68□□□□□ -0.86
VPS13C-210ENST00000561258 ERVH48-1M5A8F1 160 aa9.68□□□□□ -0.86
VPS13C-210ENST00000561258 LILRA1O75019 489 aa9.68□□□□□ -0.86
VPS13C-210ENST00000561258 NBPF20Q3BBV1 942 aa9.68□□□□□ -0.86
VPS13C-210ENST00000561258 DZIP3Q86Y13 1208 aaKnown RBP9.68□□□□□ -0.86
VPS13C-210ENST00000561258 ADH1AP07327 375 aa9.67□□□□□ -0.86
VPS13C-210ENST00000561258 FOXD4L5Q5VV16 416 aaPredicted RBP9.67□□□□□ -0.86
VPS13C-210ENST00000561258 SV2AQ7L0J3 742 aa9.67□□□□□ -0.86
VPS13C-210ENST00000561258 KDF1Q8NAX2 398 aaPredicted RBP9.67□□□□□ -0.86
VPS13C-210ENST00000561258 RASSF7Q02833 373 aa9.66□□□□□ -0.86
VPS13C-210ENST00000561258 HOMEZQ8IX15 550 aa9.66□□□□□ -0.86
VPS13C-210ENST00000561258 TMEM151AQ8N4L1 468 aa9.66□□□□□ -0.86
VPS13C-210ENST00000561258 SVOPQ8N4V2 548 aa9.66□□□□□ -0.86
VPS13C-210ENST00000561258 GDF11O95390 407 aa9.65□□□□□ -0.86
VPS13C-210ENST00000561258 PTGIRP43119 386 aa9.65□□□□□ -0.86
VPS13C-210ENST00000561258 ESPNB1AK53 854 aa9.64□□□□□ -0.87
VPS13C-210ENST00000561258 PNMA1Q8ND90 353 aa9.64□□□□□ -0.87
VPS13C-210ENST00000561258 LOC100996750A0A140TA64 210 aa9.63□□□□□ -0.87
VPS13C-210ENST00000561258 SLURP2P0DP57 97 aa9.63□□□□□ -0.87
VPS13C-210ENST00000561258 RFC5P40937 340 aa9.63□□□□□ -0.87
VPS13C-210ENST00000561258 KRTAP4-6Q9BYQ5 205 aa9.63□□□□□ -0.87
VPS13C-210ENST00000561258 CYLDQ9NQC7 956 aa9.63□□□□□ -0.87
VPS13C-210ENST00000561258 CUEDC1Q9NWM3 386 aaPredicted RBP9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms