RNA–Protein interactions for RNA: ENST00000560715.5

TSPAN3-209, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 2,892 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-209ENST00000560715 CHPF2Q9P2E5 772 aa8.64□□□□□ -1.03
TSPAN3-209ENST00000560715 H3BRB1 525 aa8.64□□□□□ -1.03
TSPAN3-209ENST00000560715 HSP90AB4PQ58FF6 505 aa8.64□□□□□ -1.03
TSPAN3-209ENST00000560715 DCAF11Q8TEB1 546 aa8.64□□□□□ -1.03
TSPAN3-209ENST00000560715 SPOCK3Q9BQ16 436 aa8.64□□□□□ -1.03
TSPAN3-209ENST00000560715 TRIM34Q9BYJ4 488 aa8.64□□□□□ -1.03
TSPAN3-209ENST00000560715 TUT1Q9H6E5 874 aaKnown RBP8.64□□□□□ -1.03
TSPAN3-209ENST00000560715 CAPN10Q9HC96 672 aa8.64□□□□□ -1.03
TSPAN3-209ENST00000560715 FAN1Q9Y2M0 1017 aa8.64□□□□□ -1.03
TSPAN3-209ENST00000560715 CCDC61Q9Y6R9 512 aa8.64□□□□□ -1.03
TSPAN3-209ENST00000560715 SPTY2D1Q68D10 685 aaPredicted RBP8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 NDUFB9Q9Y6M9 179 aa8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 UGGT2Q9NYU1 1516 aa8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 PHLDB1Q86UU1 1377 aa8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 NFKBIBQ15653 356 aa8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 LDLRAD1Q5T700 205 aa8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 RBM33Q96EV2 1170 aaKnown RBP8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 ACBD3Q9H3P7 528 aa8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 TBX22Q9Y458 520 aa8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 NUTM2BA6NNL0 878 aaPredicted RBP8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 NUTM2EB1AL46 878 aaPredicted RBP8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 ARID4AP29374 1257 aaPredicted RBP8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 NUTM2DQ5VT03 806 aaPredicted RBP8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 NUTM2AQ8IVF1 878 aaPredicted RBP8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 TMTC2Q8N394 836 aa8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 LRRN4Q8WUT4 740 aa8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 RRAGDQ9NQL2 400 aaPredicted RBP8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 PNMA2Q9UL42 364 aa8.63□□□□□ -1.03
TSPAN3-209ENST00000560715 CCDC194A0A1B0GVG4 234 aa8.62□□□□□ -1.03
TSPAN3-209ENST00000560715 CTDSPL2Q05D32 466 aa8.62□□□□□ -1.03
TSPAN3-209ENST00000560715 ZNF579Q8NAF0 562 aaKnown RBP8.62□□□□□ -1.03
TSPAN3-209ENST00000560715 SPIRE2Q8WWL2 714 aa8.62□□□□□ -1.03
TSPAN3-209ENST00000560715 MAGI1Q96QZ7 1491 aaPredicted RBP8.62□□□□□ -1.03
TSPAN3-209ENST00000560715 ERCC3P19447 782 aa8.62□□□□□ -1.03
TSPAN3-209ENST00000560715 PLPP6Q8IY26 295 aa8.62□□□□□ -1.03
TSPAN3-209ENST00000560715 PRM3Q9NNZ6 103 aa8.62□□□□□ -1.03
TSPAN3-209ENST00000560715 PRR12Q9ULL5 1215 aa8.62□□□□□ -1.03
TSPAN3-209ENST00000560715 MAPK1P28482 360 aa8.61□□□□□ -1.03
TSPAN3-209ENST00000560715 TINF2Q9BSI4 451 aa8.61□□□□□ -1.03
TSPAN3-209ENST00000560715 CCDC18Q5T9S5 1454 aa8.61□□□□□ -1.03
TSPAN3-209ENST00000560715 KIAA0586Q9BVV6 1533 aa8.61□□□□□ -1.03
TSPAN3-209ENST00000560715 HECW1Q76N89 1606 aa8.61□□□□□ -1.03
TSPAN3-209ENST00000560715 PPP1R3GB7ZBB8 358 aa8.6□□□□□ -1.03
TSPAN3-209ENST00000560715 FOXD4Q12950 439 aaPredicted RBP8.6□□□□□ -1.03
TSPAN3-209ENST00000560715 RALBP1Q15311 655 aa8.6□□□□□ -1.03
TSPAN3-209ENST00000560715 GRIN2AQ12879 1464 aa8.6□□□□□ -1.03
TSPAN3-209ENST00000560715 SUPT6HQ7KZ85 1726 aaKnown RBP8.6□□□□□ -1.03
TSPAN3-209ENST00000560715 CALD1Q05682 793 aaKnown RBP8.6□□□□□ -1.03
TSPAN3-209ENST00000560715 KCNB2Q92953 911 aa8.6□□□□□ -1.03
TSPAN3-209ENST00000560715 PRDM4Q9UKN5 801 aa8.6□□□□□ -1.03
TSPAN3-209ENST00000560715 MAPKBP1O60336 1514 aa8.6□□□□□ -1.03
TSPAN3-209ENST00000560715 EHBP1L1Q8N3D4 1523 aa8.6□□□□□ -1.03
TSPAN3-209ENST00000560715 CENPJQ9HC77 1338 aaPredicted RBP8.59□□□□□ -1.03
TSPAN3-209ENST00000560715 U2SURPO15042 1029 aaKnown RBP8.59□□□□□ -1.03
TSPAN3-209ENST00000560715 PPFIA4O75335 1185 aa8.59□□□□□ -1.03
TSPAN3-209ENST00000560715 FAM43BQ6ZT52 329 aaPredicted RBP8.59□□□□□ -1.03
TSPAN3-209ENST00000560715 MORC4Q8TE76 937 aa8.59□□□□□ -1.03
TSPAN3-209ENST00000560715 HELBQ8NG08 1087 aaPredicted RBP8.59□□□□□ -1.03
TSPAN3-209ENST00000560715 MTUS2Q5JR59 1369 aa8.59□□□□□ -1.03
TSPAN3-209ENST00000560715 CREB3O43889 395 aa8.59□□□□□ -1.04
TSPAN3-209ENST00000560715 DPY19L2Q6NUT2 758 aa8.59□□□□□ -1.04
TSPAN3-209ENST00000560715 TERF2IPQ9NYB0 399 aa8.59□□□□□ -1.04
TSPAN3-209ENST00000560715 ATP2B1P20020 1258 aa8.58□□□□□ -1.04
TSPAN3-209ENST00000560715 NOP9Q86U38 636 aaKnown RBP8.58□□□□□ -1.04
TSPAN3-209ENST00000560715 SYNJ2O15056 1496 aa8.58□□□□□ -1.04
TSPAN3-209ENST00000560715 KIAA0556O60303 1618 aa8.58□□□□□ -1.04
TSPAN3-209ENST00000560715 MAP3K7O43318 606 aa8.58□□□□□ -1.04
TSPAN3-209ENST00000560715 PPP1R18Q6NYC8 613 aa8.58□□□□□ -1.04
TSPAN3-209ENST00000560715 RNF39Q9H2S5 420 aa8.58□□□□□ -1.04
TSPAN3-209ENST00000560715 ZBED9Q6R2W3 1325 aa8.57□□□□□ -1.04
TSPAN3-209ENST00000560715 TCERG1O14776 1098 aaKnown RBP8.57□□□□□ -1.04
TSPAN3-209ENST00000560715 FAM69CQ0P6D2 419 aa8.57□□□□□ -1.04
TSPAN3-209ENST00000560715 SPDYE1Q8NFV5 336 aaPredicted RBP8.57□□□□□ -1.04
TSPAN3-209ENST00000560715 GAS2L2Q8NHY3 880 aa8.57□□□□□ -1.04
TSPAN3-209ENST00000560715 SIN3AQ96ST3 1273 aa8.57□□□□□ -1.04
TSPAN3-209ENST00000560715 PNNQ9H307 717 aaKnown RBP8.57□□□□□ -1.04
TSPAN3-209ENST00000560715 SETD5Q9C0A6 1442 aa8.57□□□□□ -1.04
TSPAN3-209ENST00000560715 GPATCH11Q8N954 259 aa8.57□□□□□ -1.04
TSPAN3-209ENST00000560715 STAG1Q8WVM7 1258 aa8.57□□□□□ -1.04
TSPAN3-209ENST00000560715 FGD6Q6ZV73 1430 aa8.57□□□□□ -1.04
TSPAN3-209ENST00000560715 ATP2B4P23634 1241 aa8.56□□□□□ -1.04
TSPAN3-209ENST00000560715 WASHC4Q2M389 1173 aa8.56□□□□□ -1.04
TSPAN3-209ENST00000560715 RSBN1LQ6PCB5 846 aaPredicted RBP8.56□□□□□ -1.04
TSPAN3-209ENST00000560715 TMEM87AQ8NBN3 555 aa8.56□□□□□ -1.04
TSPAN3-209ENST00000560715 PCDHGB7Q9Y5F8 929 aa8.56□□□□□ -1.04
TSPAN3-209ENST00000560715 ARHGEF11O15085 1522 aa8.56□□□□□ -1.04
TSPAN3-209ENST00000560715 DISP1Q96F81 1524 aa8.56□□□□□ -1.04
TSPAN3-209ENST00000560715 NCOA2Q15596 1464 aa8.56□□□□□ -1.04
TSPAN3-209ENST00000560715 CAPN12Q6ZSI9 719 aa8.56□□□□□ -1.04
TSPAN3-209ENST00000560715 CCDC146Q8IYE0 955 aa8.56□□□□□ -1.04
TSPAN3-209ENST00000560715 HLA-CQ95604 372 aa8.56□□□□□ -1.04
TSPAN3-209ENST00000560715 RAB3GAP2Q9H2M9 1393 aa8.56□□□□□ -1.04
TSPAN3-209ENST00000560715 RNF123Q5XPI4 1314 aa8.56□□□□□ -1.04
TSPAN3-209ENST00000560715 VAMP1P23763 118 aa8.55□□□□□ -1.04
TSPAN3-209ENST00000560715 METTL16Q86W50 562 aaKnown RBP8.55□□□□□ -1.04
TSPAN3-209ENST00000560715 ZNF594Q96JF6 807 aaPredicted RBP8.55□□□□□ -1.04
TSPAN3-209ENST00000560715 EPRSP07814 1512 aaKnown RBP8.55□□□□□ -1.04
TSPAN3-209ENST00000560715 ATP9BO43861 1147 aa8.55□□□□□ -1.04
TSPAN3-209ENST00000560715 PRMT3O60678 531 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms