RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PEAK1Q9H792 1746 aa16.48■□□□□ 0.23
LDLR-212ENST00000560467 KCNQ2O43526 872 aa16.48■□□□□ 0.23
LDLR-212ENST00000560467 WDR17Q8IZU2 1322 aa16.47■□□□□ 0.23
LDLR-212ENST00000560467 QRICH2Q9H0J4 1663 aa16.47■□□□□ 0.23
LDLR-212ENST00000560467 CPSF1Q10570 1443 aaKnown RBP16.47■□□□□ 0.23
LDLR-212ENST00000560467 C11orf95C9JLR9 678 aaPredicted RBP16.47■□□□□ 0.23
LDLR-212ENST00000560467 SOX12O15370 315 aa16.47■□□□□ 0.23
LDLR-212ENST00000560467 YY1P25490 414 aa16.47■□□□□ 0.23
LDLR-212ENST00000560467 MARCH10Q8NA82 808 aaPredicted RBP16.47■□□□□ 0.23
LDLR-212ENST00000560467 PIK3C2AO00443 1686 aa16.46■□□□□ 0.23
LDLR-212ENST00000560467 BCL11BQ9C0K0 894 aaPredicted RBP16.46■□□□□ 0.23
LDLR-212ENST00000560467 TTC21BQ7Z4L5 1316 aa16.45■□□□□ 0.22
LDLR-212ENST00000560467 EVC2Q86UK5 1308 aa16.45■□□□□ 0.22
LDLR-212ENST00000560467 PLSCR1O15162 318 aa16.45■□□□□ 0.22
LDLR-212ENST00000560467 ARHGEF25Q86VW2 580 aa16.45■□□□□ 0.22
LDLR-212ENST00000560467 PDGFDQ9GZP0 370 aaPredicted RBP16.45■□□□□ 0.22
LDLR-212ENST00000560467 NINLQ9Y2I6 1382 aa16.44■□□□□ 0.22
LDLR-212ENST00000560467 CSB-PGBD3P0DP91 1061 aa16.43■□□□□ 0.22
LDLR-212ENST00000560467 EIF4G2P78344 907 aaKnown RBP eCLIP16.43■□□□□ 0.22
LDLR-212ENST00000560467 PROM2Q8N271 834 aa16.43■□□□□ 0.22
LDLR-212ENST00000560467 CARD11Q9BXL7 1154 aa16.43■□□□□ 0.22
LDLR-212ENST00000560467 COL18A1P39060 1754 aa16.43■□□□□ 0.22
LDLR-212ENST00000560467 ZNF316A6NFI3 1004 aaPredicted RBP16.42■□□□□ 0.22
LDLR-212ENST00000560467 ZBTB7AO95365 584 aa16.42■□□□□ 0.22
LDLR-212ENST00000560467 CDCA7Q9BWT1 371 aaPredicted RBP16.42■□□□□ 0.22
LDLR-212ENST00000560467 BCL9O00512 1426 aa16.42■□□□□ 0.22
LDLR-212ENST00000560467 ROCK2O75116 1388 aaKnown RBP16.41■□□□□ 0.22
LDLR-212ENST00000560467 KCNH5Q8NCM2 988 aa16.41■□□□□ 0.22
LDLR-212ENST00000560467 CARD10Q9BWT7 1032 aa16.41■□□□□ 0.22
LDLR-212ENST00000560467 NFAT5O94916 1531 aa16.4■□□□□ 0.22
LDLR-212ENST00000560467 ZNF692Q9BU19 519 aaPredicted RBP16.39■□□□□ 0.21
LDLR-212ENST00000560467 TTC21AQ8NDW8 1320 aa16.39■□□□□ 0.21
LDLR-212ENST00000560467 RGPD3A6NKT7 1758 aaPredicted RBP16.38■□□□□ 0.21
LDLR-212ENST00000560467 RGPD4Q7Z3J3 1758 aa16.38■□□□□ 0.21
LDLR-212ENST00000560467 TRPM1Q7Z4N2 1603 aa16.38■□□□□ 0.21
LDLR-212ENST00000560467 TXNRD1Q16881 649 aa16.38■□□□□ 0.21
LDLR-212ENST00000560467 KTN1Q86UP2 1357 aaKnown RBP16.38■□□□□ 0.21
LDLR-212ENST00000560467 CASZ1Q86V15 1759 aa16.37■□□□□ 0.21
LDLR-212ENST00000560467 PTGER2P43116 358 aa16.37■□□□□ 0.21
LDLR-212ENST00000560467 ATF5Q9Y2D1 282 aaPredicted RBP16.37■□□□□ 0.21
LDLR-212ENST00000560467 CCDC7Q96M83 1385 aa16.37■□□□□ 0.21
LDLR-212ENST00000560467 TNS2Q63HR2 1409 aa16.36■□□□□ 0.21
LDLR-212ENST00000560467 SBF2Q86WG5 1849 aa16.36■□□□□ 0.21
LDLR-212ENST00000560467 WNK3Q9BYP7 1800 aa16.36■□□□□ 0.21
LDLR-212ENST00000560467 DCAF8L1A6NGE4 600 aa16.36■□□□□ 0.21
LDLR-212ENST00000560467 EXOC5O00471 708 aa16.36■□□□□ 0.21
LDLR-212ENST00000560467 SLC24A1O60721 1099 aa16.36■□□□□ 0.21
LDLR-212ENST00000560467 STK32BQ9NY57 414 aa16.36■□□□□ 0.21
LDLR-212ENST00000560467 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.35■□□□□ 0.21
LDLR-212ENST00000560467 SLC15A2Q16348 729 aa16.34■□□□□ 0.21
LDLR-212ENST00000560467 NME9Q86XW9 330 aa16.34■□□□□ 0.21
LDLR-212ENST00000560467 ACSBG1Q96GR2 724 aa16.34■□□□□ 0.21
LDLR-212ENST00000560467 NLRP2Q9NX02 1062 aa16.33■□□□□ 0.2
LDLR-212ENST00000560467 ABCC6O95255 1503 aa16.33■□□□□ 0.2
LDLR-212ENST00000560467 MYOM1P52179 1685 aa16.33■□□□□ 0.2
LDLR-212ENST00000560467 HSPA5P11021 654 aaKnown RBP16.32■□□□□ 0.2
LDLR-212ENST00000560467 ERBB3P21860 1342 aa16.32■□□□□ 0.2
LDLR-212ENST00000560467 AKAP12Q02952 1782 aa16.32■□□□□ 0.2
LDLR-212ENST00000560467 USP31Q70CQ4 1352 aa16.32■□□□□ 0.2
LDLR-212ENST00000560467 CD163L1Q9NR16 1453 aa16.31■□□□□ 0.2
LDLR-212ENST00000560467 SBNO2Q9Y2G9 1366 aa16.31■□□□□ 0.2
LDLR-212ENST00000560467 FHDC1Q9C0D6 1143 aaPredicted RBP16.31■□□□□ 0.2
LDLR-212ENST00000560467 USP47Q96K76 1375 aa16.3■□□□□ 0.2
LDLR-212ENST00000560467 RGPD5Q99666 1765 aa16.3■□□□□ 0.2
LDLR-212ENST00000560467 IL2RBP14784 551 aa16.29■□□□□ 0.2
LDLR-212ENST00000560467 TMC1Q8TDI8 760 aa16.29■□□□□ 0.2
LDLR-212ENST00000560467 SGIP1Q9BQI5 828 aa16.29■□□□□ 0.2
LDLR-212ENST00000560467 MTFR1LQ9H019 292 aa16.29■□□□□ 0.2
LDLR-212ENST00000560467 ZNF827Q17R98 1081 aa16.28■□□□□ 0.2
LDLR-212ENST00000560467 ANKRD24Q8TF21 1146 aa16.28■□□□□ 0.2
LDLR-212ENST00000560467 SYT17Q9BSW7 474 aa16.28■□□□□ 0.2
LDLR-212ENST00000560467 SLC12A5Q9H2X9 1139 aa16.27■□□□□ 0.2
LDLR-212ENST00000560467 MON2Q7Z3U7 1717 aa16.27■□□□□ 0.19
LDLR-212ENST00000560467 NHSQ6T4R5 1651 aa16.27■□□□□ 0.19
LDLR-212ENST00000560467 UTRNP46939 3433 aa16.26■□□□□ 0.19
LDLR-212ENST00000560467 ZNF784Q8NCA9 323 aaPredicted RBP16.26■□□□□ 0.19
LDLR-212ENST00000560467 ST20-MTHFSA0A0A6YYL1 179 aa16.25■□□□□ 0.19
LDLR-212ENST00000560467 CDCA8Q53HL2 280 aa16.25■□□□□ 0.19
LDLR-212ENST00000560467 HDGFL2Q7Z4V5 671 aaPredicted RBP16.25■□□□□ 0.19
LDLR-212ENST00000560467 LRRC4BQ9NT99 713 aa16.25■□□□□ 0.19
LDLR-212ENST00000560467 PAPPAQ13219 1627 aa16.25■□□□□ 0.19
LDLR-212ENST00000560467 EDC4Q6P2E9 1401 aaKnown RBP16.24■□□□□ 0.19
LDLR-212ENST00000560467 A0A1W2PP64 1363 aa16.24■□□□□ 0.19
LDLR-212ENST00000560467 TMF1P82094 1093 aa16.23■□□□□ 0.19
LDLR-212ENST00000560467 LTV1Q96GA3 475 aaPredicted RBP16.23■□□□□ 0.19
LDLR-212ENST00000560467 ARXQ96QS3 562 aa16.23■□□□□ 0.19
LDLR-212ENST00000560467 USP54Q70EL1 1684 aa16.23■□□□□ 0.19
LDLR-212ENST00000560467 DDX54Q8TDD1 881 aaKnown RBP16.21■□□□□ 0.19
LDLR-212ENST00000560467 TERF2IPQ9NYB0 399 aa16.21■□□□□ 0.19
LDLR-212ENST00000560467 IP6K1Q92551 441 aa16.2■□□□□ 0.18
LDLR-212ENST00000560467 AKT1S1Q96B36 256 aa16.2■□□□□ 0.18
LDLR-212ENST00000560467 MAP3K5Q99683 1374 aa16.19■□□□□ 0.18
LDLR-212ENST00000560467 KCNQ4P56696 695 aa16.19■□□□□ 0.18
LDLR-212ENST00000560467 POLR3GLQ9BT43 218 aa16.19■□□□□ 0.18
LDLR-212ENST00000560467 BTAF1O14981 1849 aa16.19■□□□□ 0.18
LDLR-212ENST00000560467 LTN1O94822 1766 aa16.18■□□□□ 0.18
LDLR-212ENST00000560467 FBLN1P23142 703 aa16.17■□□□□ 0.18
LDLR-212ENST00000560467 KLHL34Q8N239 644 aa16.17■□□□□ 0.18
LDLR-212ENST00000560467 SYTL4Q96C24 671 aaPredicted RBP16.17■□□□□ 0.18
LDLR-212ENST00000560467 MAP3K19Q56UN5 1328 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 48.8 ms