RNA–Protein interactions for RNA: ENST00000560463.5

TRAF3-209, Transcript of TNF receptor associated factor 3, humanhuman

TSL 3

Gene TRAF3, Length 701 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-209ENST00000560463 U2AF1Q01081 240 aaKnown RBP eCLIP11.41□□□□□ -0.58
TRAF3-209ENST00000560463 LMOD2Q6P5Q4 547 aa11.41□□□□□ -0.58
TRAF3-209ENST00000560463 RUNDC1Q96C34 613 aa11.41□□□□□ -0.58
TRAF3-209ENST00000560463 COL16A1Q07092 1604 aaPredicted RBP11.4□□□□□ -0.58
TRAF3-209ENST00000560463 U2SURPO15042 1029 aaKnown RBP11.4□□□□□ -0.58
TRAF3-209ENST00000560463 TOM1O60784 492 aa11.4□□□□□ -0.58
TRAF3-209ENST00000560463 FCHSD2O94868 740 aa11.4□□□□□ -0.58
TRAF3-209ENST00000560463 GCP02774 474 aa11.4□□□□□ -0.58
TRAF3-209ENST00000560463 IL13P35225 146 aa11.4□□□□□ -0.58
TRAF3-209ENST00000560463 DDX17Q92841 729 aaKnown RBP11.4□□□□□ -0.58
TRAF3-209ENST00000560463 SOX12O15370 315 aa11.39□□□□□ -0.59
TRAF3-209ENST00000560463 PDE3BQ13370 1112 aa11.39□□□□□ -0.59
TRAF3-209ENST00000560463 NEFMP07197 916 aa11.38□□□□□ -0.59
TRAF3-209ENST00000560463 HOXC9P31274 260 aa11.38□□□□□ -0.59
TRAF3-209ENST00000560463 EIF4A2Q14240 407 aaKnown RBP11.38□□□□□ -0.59
TRAF3-209ENST00000560463 HSP90AB2PQ58FF8 381 aa11.38□□□□□ -0.59
TRAF3-209ENST00000560463 ARHGEF25Q86VW2 580 aa11.38□□□□□ -0.59
TRAF3-209ENST00000560463 IP6K1Q92551 441 aa11.38□□□□□ -0.59
TRAF3-209ENST00000560463 LMO7Q8WWI1 1683 aa11.37□□□□□ -0.59
TRAF3-209ENST00000560463 CCDC146Q8IYE0 955 aa11.37□□□□□ -0.59
TRAF3-209ENST00000560463 LRRC59Q96AG4 307 aaKnown RBP11.37□□□□□ -0.59
TRAF3-209ENST00000560463 CPDO75976 1380 aa11.37□□□□□ -0.59
TRAF3-209ENST00000560463 MAPK8IP3Q9UPT6 1336 aa11.36□□□□□ -0.59
TRAF3-209ENST00000560463 COL14A1Q05707 1796 aaKnown RBP11.36□□□□□ -0.59
TRAF3-209ENST00000560463 APAF1O14727 1248 aa11.36□□□□□ -0.59
TRAF3-209ENST00000560463 PLEKHF1Q96S99 279 aa11.36□□□□□ -0.59
TRAF3-209ENST00000560463 RSPH6AQ9H0K4 717 aa11.36□□□□□ -0.59
TRAF3-209ENST00000560463 CCDC27Q2M243 656 aa11.35□□□□□ -0.59
TRAF3-209ENST00000560463 TCP11L2Q8N4U5 519 aa11.35□□□□□ -0.59
TRAF3-209ENST00000560463 KDRP35968 1356 aa11.35□□□□□ -0.59
TRAF3-209ENST00000560463 PARP4Q9UKK3 1724 aaKnown RBP11.34□□□□□ -0.59
TRAF3-209ENST00000560463 NWD2Q9ULI1 1742 aa11.34□□□□□ -0.59
TRAF3-209ENST00000560463 CACNA1FO60840 1977 aa11.34□□□□□ -0.59
TRAF3-209ENST00000560463 IGSF1Q8N6C5 1336 aa11.34□□□□□ -0.59
TRAF3-209ENST00000560463 ZNF521Q96K83 1311 aa11.34□□□□□ -0.59
TRAF3-209ENST00000560463 PLCH1Q4KWH8 1693 aa11.33□□□□□ -0.6
TRAF3-209ENST00000560463 WNK3Q9BYP7 1800 aa11.32□□□□□ -0.6
TRAF3-209ENST00000560463 HMOX1P09601 288 aa11.32□□□□□ -0.6
TRAF3-209ENST00000560463 PRKAR2BP31323 418 aa11.32□□□□□ -0.6
TRAF3-209ENST00000560463 CERKQ8TCT0 537 aa11.32□□□□□ -0.6
TRAF3-209ENST00000560463 NCAPD2Q15021 1401 aa11.32□□□□□ -0.6
TRAF3-209ENST00000560463 UBAP1LF5GYI3 381 aa11.31□□□□□ -0.6
TRAF3-209ENST00000560463 TMPOP42166 694 aaKnown RBP11.31□□□□□ -0.6
TRAF3-209ENST00000560463 ZC3H6P61129 1189 aaKnown RBP11.31□□□□□ -0.6
TRAF3-209ENST00000560463 GOLGA2Q08379 1002 aa11.31□□□□□ -0.6
TRAF3-209ENST00000560463 SULT6B1Q6IMI4 303 aa11.31□□□□□ -0.6
TRAF3-209ENST00000560463 WDR63Q8IWG1 891 aa11.31□□□□□ -0.6
TRAF3-209ENST00000560463 CABLES1Q8TDN4 633 aa11.31□□□□□ -0.6
TRAF3-209ENST00000560463 EYA1Q99502 592 aa11.31□□□□□ -0.6
TRAF3-209ENST00000560463 SALL2Q9Y467 1007 aaPredicted RBP11.31□□□□□ -0.6
TRAF3-209ENST00000560463 PKD1L3Q7Z443 1732 aa11.31□□□□□ -0.6
TRAF3-209ENST00000560463 SCN11AQ9UI33 1791 aa11.31□□□□□ -0.6
TRAF3-209ENST00000560463 KIAA0232Q92628 1395 aa11.3□□□□□ -0.6
TRAF3-209ENST00000560463 PLEKHG2Q9H7P9 1386 aa11.3□□□□□ -0.6
TRAF3-209ENST00000560463 ZBTB7CA1YPR0 619 aa11.3□□□□□ -0.6
TRAF3-209ENST00000560463 HAP1P54257 671 aaPredicted RBP11.3□□□□□ -0.6
TRAF3-209ENST00000560463 NFE2L2Q16236 605 aa11.3□□□□□ -0.6
TRAF3-209ENST00000560463 WWC1Q8IX03 1113 aa11.3□□□□□ -0.6
TRAF3-209ENST00000560463 RIPK4P57078 832 aa11.29□□□□□ -0.6
TRAF3-209ENST00000560463 LMOD3Q0VAK6 560 aa11.29□□□□□ -0.6
TRAF3-209ENST00000560463 ANKRD24Q8TF21 1146 aa11.29□□□□□ -0.6
TRAF3-209ENST00000560463 ERBB3P21860 1342 aa11.29□□□□□ -0.6
TRAF3-209ENST00000560463 NRAPQ86VF7 1730 aa11.29□□□□□ -0.6
TRAF3-209ENST00000560463 SIPA1L3O60292 1781 aaPredicted RBP11.28□□□□□ -0.6
TRAF3-209ENST00000560463 LRRC37A3O60309 1634 aa11.28□□□□□ -0.6
TRAF3-209ENST00000560463 SENP3-EIF4A1A0A087X0R7 540 aa11.28□□□□□ -0.6
TRAF3-209ENST00000560463 PLEKHG5O94827 1062 aa11.28□□□□□ -0.6
TRAF3-209ENST00000560463 PIP4K2BP78356 416 aa11.28□□□□□ -0.6
TRAF3-209ENST00000560463 NEUROD2Q15784 382 aa11.28□□□□□ -0.6
TRAF3-209ENST00000560463 LTV1Q96GA3 475 aaPredicted RBP11.28□□□□□ -0.6
TRAF3-209ENST00000560463 PHACTR3Q96KR7 559 aa11.28□□□□□ -0.6
TRAF3-209ENST00000560463 PRDM11Q9NQV5 511 aa11.28□□□□□ -0.6
TRAF3-209ENST00000560463 AXIN2Q9Y2T1 843 aa11.28□□□□□ -0.6
TRAF3-209ENST00000560463 E9PSI1 815 aa11.27□□□□□ -0.61
TRAF3-209ENST00000560463 CALD1Q05682 793 aaKnown RBP11.27□□□□□ -0.61
TRAF3-209ENST00000560463 SLFN5Q08AF3 891 aa11.27□□□□□ -0.61
TRAF3-209ENST00000560463 AEBP1Q8IUX7 1158 aa11.27□□□□□ -0.61
TRAF3-209ENST00000560463 TRMT2AQ8IZ69 625 aaKnown RBP11.27□□□□□ -0.61
TRAF3-209ENST00000560463 RRP7AQ9Y3A4 280 aaKnown RBP11.27□□□□□ -0.61
TRAF3-209ENST00000560463 IL16Q14005 1332 aa11.27□□□□□ -0.61
TRAF3-209ENST00000560463 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.26□□□□□ -0.61
TRAF3-209ENST00000560463 COL5A2P05997 1499 aaPredicted RBP11.26□□□□□ -0.61
TRAF3-209ENST00000560463 NBPF6Q5VWK0 638 aa11.26□□□□□ -0.61
TRAF3-209ENST00000560463 GAS2L2Q8NHY3 880 aa11.26□□□□□ -0.61
TRAF3-209ENST00000560463 NBPF4Q96M43 638 aa11.26□□□□□ -0.61
TRAF3-209ENST00000560463 TRIM35Q9UPQ4 493 aa11.26□□□□□ -0.61
TRAF3-209ENST00000560463 ADAMTS7Q9UKP4 1686 aa11.26□□□□□ -0.61
TRAF3-209ENST00000560463 SHANK3Q9BYB0 1731 aa11.26□□□□□ -0.61
TRAF3-209ENST00000560463 KAT6BQ8WYB5 2073 aa11.26□□□□□ -0.61
TRAF3-209ENST00000560463 CDCA7LQ96GN5 454 aa11.25□□□□□ -0.61
TRAF3-209ENST00000560463 KDM3BQ7LBC6 1761 aa11.24□□□□□ -0.61
TRAF3-209ENST00000560463 HTATSF1O43719 755 aaKnown RBP11.24□□□□□ -0.61
TRAF3-209ENST00000560463 CHRNA2Q15822 529 aa11.24□□□□□ -0.61
TRAF3-209ENST00000560463 AMOTQ4VCS5 1084 aa11.24□□□□□ -0.61
TRAF3-209ENST00000560463 DUSP27Q5VZP5 1158 aa11.24□□□□□ -0.61
TRAF3-209ENST00000560463 MYH16Q9H6N6 1097 aa11.24□□□□□ -0.61
TRAF3-209ENST00000560463 WDR17Q8IZU2 1322 aa11.24□□□□□ -0.61
TRAF3-209ENST00000560463 JCADQ9P266 1359 aa11.23□□□□□ -0.61
TRAF3-209ENST00000560463 FAM83GA6ND36 823 aa11.22□□□□□ -0.61
TRAF3-209ENST00000560463 CSB-PGBD3P0DP91 1061 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms