RNA–Protein interactions for RNA: ENST00000560131.1

TPM1-222, Transcript of tropomyosin 1, human

TSL 2

Gene TPM1, Length 537 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM1-222	ENST00000560131	SENP2	Q9HC62	589 aa		7.58	□□□□□ -1.2
TPM1-222	ENST00000560131	C6orf229	H3BNL8	230 aa		7.57	□□□□□ -1.2
TPM1-222	ENST00000560131	ATG7	O95352	703 aa		7.57	□□□□□ -1.2
TPM1-222	ENST00000560131	RPIA	P49247	311 aa		7.57	□□□□□ -1.2
TPM1-222	ENST00000560131	SEMA3F	Q13275	785 aa		7.57	□□□□□ -1.2
TPM1-222	ENST00000560131	FOXD4L5	Q5VV16	416 aa	Predicted RBP	7.57	□□□□□ -1.2
TPM1-222	ENST00000560131	PRR7	Q8TB68	274 aa		7.57	□□□□□ -1.2
TPM1-222	ENST00000560131	EPS8L1	Q8TE68	723 aa		7.57	□□□□□ -1.2
TPM1-222	ENST00000560131	SLC16A10	Q8TF71	515 aa		7.57	□□□□□ -1.2
TPM1-222	ENST00000560131	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	7.57	□□□□□ -1.2
TPM1-222	ENST00000560131	VRTN	Q9H8Y1	702 aa		7.57	□□□□□ -1.2
TPM1-222	ENST00000560131	ATP13A2	Q9NQ11	1180 aa		7.57	□□□□□ -1.2
TPM1-222	ENST00000560131	NR1I2	O75469	434 aa		7.56	□□□□□ -1.2
TPM1-222	ENST00000560131	CD2BP2	O95400	341 aa	Known RBP	7.56	□□□□□ -1.2
TPM1-222	ENST00000560131	PNMA1	Q8ND90	353 aa		7.56	□□□□□ -1.2
TPM1-222	ENST00000560131	TRIM47	Q96LD4	638 aa		7.56	□□□□□ -1.2
TPM1-222	ENST00000560131	UCN2	Q96RP3	112 aa		7.56	□□□□□ -1.2
TPM1-222	ENST00000560131	ANP32E	Q9BTT0	268 aa		7.56	□□□□□ -1.2
TPM1-222	ENST00000560131	CARNS1	A5YM72	827 aa		7.54	□□□□□ -1.2
TPM1-222	ENST00000560131	LOR	P23490	312 aa	Predicted RBP	7.54	□□□□□ -1.2
TPM1-222	ENST00000560131	ATP6V1A	P38606	617 aa		7.54	□□□□□ -1.2
TPM1-222	ENST00000560131	FUT2	Q10981	343 aa		7.54	□□□□□ -1.2
TPM1-222	ENST00000560131	NR6A1	Q15406	480 aa		7.54	□□□□□ -1.2
TPM1-222	ENST00000560131	TTC24	A2A3L6	582 aa	Predicted RBP	7.53	□□□□□ -1.2
TPM1-222	ENST00000560131	TMEM88B	A6NKF7	163 aa		7.53	□□□□□ -1.2
TPM1-222	ENST00000560131	RBM25	P49756	843 aa	Known RBP	7.53	□□□□□ -1.2
TPM1-222	ENST00000560131	EIF4G2	P78344	907 aa	Known RBP eCLIP	7.53	□□□□□ -1.2
TPM1-222	ENST00000560131	CDCA8	Q53HL2	280 aa		7.53	□□□□□ -1.2
TPM1-222	ENST00000560131	MAFB	Q9Y5Q3	323 aa	Predicted RBP	7.53	□□□□□ -1.2
TPM1-222	ENST00000560131	EEA1	Q15075	1411 aa		7.52	□□□□□ -1.2
TPM1-222	ENST00000560131	SYMPK	Q92797	1274 aa	Known RBP	7.52	□□□□□ -1.21
TPM1-222	ENST00000560131	KIFC2	Q96AC6	838 aa		7.52	□□□□□ -1.21
TPM1-222	ENST00000560131	IVNS1ABP	Q9Y6Y0	642 aa		7.52	□□□□□ -1.21
TPM1-222	ENST00000560131	TNIK	Q9UKE5	1360 aa		7.51	□□□□□ -1.21
TPM1-222	ENST00000560131	ATP9B	O43861	1147 aa		7.51	□□□□□ -1.21
TPM1-222	ENST00000560131	GMPR	P36959	345 aa		7.51	□□□□□ -1.21
TPM1-222	ENST00000560131	CCDC27	Q2M243	656 aa		7.51	□□□□□ -1.21
TPM1-222	ENST00000560131	TBC1D9	Q6ZT07	1266 aa		7.51	□□□□□ -1.21
TPM1-222	ENST00000560131	BCL11A	Q9H165	835 aa		7.51	□□□□□ -1.21
TPM1-222	ENST00000560131	PER1	O15534	1290 aa	Predicted RBP	7.5	□□□□□ -1.21
TPM1-222	ENST00000560131	DESI1	Q6ICB0	168 aa		7.5	□□□□□ -1.21
TPM1-222	ENST00000560131	RETREG3	Q86VR2	466 aa		7.5	□□□□□ -1.21
TPM1-222	ENST00000560131	ZNF428	Q96B54	188 aa		7.5	□□□□□ -1.21
TPM1-222	ENST00000560131	AMOTL2	Q9Y2J4	779 aa		7.5	□□□□□ -1.21
TPM1-222	ENST00000560131		E9PSI1	815 aa		7.49	□□□□□ -1.21
TPM1-222	ENST00000560131	CFH	P08603	1231 aa		7.49	□□□□□ -1.21
TPM1-222	ENST00000560131	NR1H3	Q13133	447 aa		7.49	□□□□□ -1.21
TPM1-222	ENST00000560131	SND1	Q7KZF4	910 aa	Known RBP eCLIP	7.49	□□□□□ -1.21
TPM1-222	ENST00000560131	SCUBE3	Q8IX30	993 aa		7.49	□□□□□ -1.21
TPM1-222	ENST00000560131	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	7.49	□□□□□ -1.21
TPM1-222	ENST00000560131	ELOA	Q14241	798 aa	Known RBP	7.48	□□□□□ -1.21
TPM1-222	ENST00000560131	KANK4	Q5T7N3	995 aa	Predicted RBP	7.48	□□□□□ -1.21
TPM1-222	ENST00000560131	B4GALNT3	Q6L9W6	998 aa		7.48	□□□□□ -1.21
TPM1-222	ENST00000560131	IRF7	Q92985	503 aa		7.48	□□□□□ -1.21
TPM1-222	ENST00000560131	NXF1	Q9UBU9	619 aa	Known RBP	7.48	□□□□□ -1.21
TPM1-222	ENST00000560131	CEP162	Q5TB80	1403 aa		7.47	□□□□□ -1.21
TPM1-222	ENST00000560131	SMPD1	P17405	629 aa		7.47	□□□□□ -1.21
TPM1-222	ENST00000560131	LYPD8	Q6UX82	237 aa		7.47	□□□□□ -1.21
TPM1-222	ENST00000560131	SPSB2	Q99619	263 aa		7.47	□□□□□ -1.21
TPM1-222	ENST00000560131	GNE	Q9Y223	722 aa	Known RBP	7.47	□□□□□ -1.21
TPM1-222	ENST00000560131		Q3C1V9	767 aa		7.46	□□□□□ -1.22
TPM1-222	ENST00000560131	MORN1	Q5T089	497 aa		7.46	□□□□□ -1.22
TPM1-222	ENST00000560131	NFATC2IP	Q8NCF5	419 aa		7.46	□□□□□ -1.22
TPM1-222	ENST00000560131	SNIP1	Q8TAD8	396 aa	Known RBP	7.46	□□□□□ -1.22
TPM1-222	ENST00000560131	SUPT16H	Q9Y5B9	1047 aa	Known RBP	7.46	□□□□□ -1.22
TPM1-222	ENST00000560131	ZBBX	A8MT70	800 aa		7.45	□□□□□ -1.22
TPM1-222	ENST00000560131	NPAS3	Q8IXF0	933 aa		7.45	□□□□□ -1.22
TPM1-222	ENST00000560131	FCF1	Q9Y324	198 aa	Known RBP	7.45	□□□□□ -1.22
TPM1-222	ENST00000560131	FBXO45	P0C2W1	286 aa		7.44	□□□□□ -1.22
TPM1-222	ENST00000560131	SLC27A5	Q9Y2P5	690 aa		7.44	□□□□□ -1.22
TPM1-222	ENST00000560131	FKBPL	Q9UIM3	349 aa		7.43	□□□□□ -1.22
TPM1-222	ENST00000560131	SCRIB	Q14160	1630 aa		7.42	□□□□□ -1.22
TPM1-222	ENST00000560131	WNT7A	O00755	349 aa		7.42	□□□□□ -1.22
TPM1-222	ENST00000560131	PUS10	Q3MIT2	529 aa	Known RBP	7.42	□□□□□ -1.22
TPM1-222	ENST00000560131	TMEM164	Q5U3C3	297 aa		7.42	□□□□□ -1.22
TPM1-222	ENST00000560131	PLEKHM2	Q8IWE5	1019 aa		7.42	□□□□□ -1.22
TPM1-222	ENST00000560131	FAM9A	Q8IZU1	332 aa	Predicted RBP	7.42	□□□□□ -1.22
TPM1-222	ENST00000560131	PIK3CD	O00329	1044 aa		7.41	□□□□□ -1.22
TPM1-222	ENST00000560131	ZBTB24	O43167	697 aa	Predicted RBP	7.41	□□□□□ -1.22
TPM1-222	ENST00000560131	SKI	P12755	728 aa		7.41	□□□□□ -1.22
TPM1-222	ENST00000560131	KCNMA1	Q12791	1236 aa		7.41	□□□□□ -1.22
TPM1-222	ENST00000560131	TXNDC2	Q86VQ3	553 aa		7.41	□□□□□ -1.22
TPM1-222	ENST00000560131	ZMIZ1	Q9ULJ6	1067 aa		7.41	□□□□□ -1.22
TPM1-222	ENST00000560131	NOVA2	Q9UNW9	492 aa	Known RBP	7.41	□□□□□ -1.22
TPM1-222	ENST00000560131	ZC3H4	Q9UPT8	1303 aa	Known RBP	7.41	□□□□□ -1.22
TPM1-222	ENST00000560131	USP17L3	A6NCW0	530 aa		7.4	□□□□□ -1.22
TPM1-222	ENST00000560131	USP17L4	A6NCW7	530 aa		7.4	□□□□□ -1.22
TPM1-222	ENST00000560131		J3QL48	77 aa		7.4	□□□□□ -1.22
TPM1-222	ENST00000560131	USP17L2	Q6R6M4	530 aa		7.4	□□□□□ -1.22
TPM1-222	ENST00000560131	USP17L1	Q7RTZ2	530 aa		7.4	□□□□□ -1.22
TPM1-222	ENST00000560131	USB1	Q9BQ65	265 aa	Known RBP	7.4	□□□□□ -1.22
TPM1-222	ENST00000560131	SALL2	Q9Y467	1007 aa	Predicted RBP	7.4	□□□□□ -1.22
TPM1-222	ENST00000560131	MROH2B	Q7Z745	1585 aa		7.4	□□□□□ -1.22
TPM1-222	ENST00000560131	KIF21B	O75037	1637 aa		7.39	□□□□□ -1.23
TPM1-222	ENST00000560131	NACAD	O15069	1562 aa		7.39	□□□□□ -1.23
TPM1-222	ENST00000560131	GOLGA3	Q08378	1498 aa		7.39	□□□□□ -1.23
TPM1-222	ENST00000560131	FAM196B	A6NMK8	535 aa		7.39	□□□□□ -1.23
TPM1-222	ENST00000560131	USP17L5	A8MUK1	530 aa		7.39	□□□□□ -1.23
TPM1-222	ENST00000560131	ARID4A	P29374	1257 aa	Predicted RBP	7.39	□□□□□ -1.23
TPM1-222	ENST00000560131	BRICD5	Q6PL45	260 aa		7.39	□□□□□ -1.23

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