RNA–Protein interactions for RNA: ENST00000559844.5

SNX1-208, Transcript of sorting nexin 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX1, Length 1,971 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-208ENST00000559844 RCAN3Q9UKA8 241 aa23.42■■□□□ 1.34
SNX1-208ENST00000559844 CDCA7LQ96GN5 454 aa23.4■■□□□ 1.34
SNX1-208ENST00000559844 NUTM2BA6NNL0 878 aaPredicted RBP23.4■■□□□ 1.34
SNX1-208ENST00000559844 NUTM2EB1AL46 878 aaPredicted RBP23.4■■□□□ 1.34
SNX1-208ENST00000559844 NUTM2AQ8IVF1 878 aaPredicted RBP23.4■■□□□ 1.34
SNX1-208ENST00000559844 ZNF521Q96K83 1311 aa23.39■■□□□ 1.33
SNX1-208ENST00000559844 ZC3H6P61129 1189 aaKnown RBP23.38■■□□□ 1.33
SNX1-208ENST00000559844 SPATA31A6Q5VVP1 1343 aa23.38■■□□□ 1.33
SNX1-208ENST00000559844 MTHFSP49914 203 aa23.38■■□□□ 1.33
SNX1-208ENST00000559844 AATKQ6ZMQ8 1374 aa23.38■■□□□ 1.33
SNX1-208ENST00000559844 RRS1Q15050 365 aaKnown RBP23.37■■□□□ 1.33
SNX1-208ENST00000559844 RRP1P56182 461 aaKnown RBP23.36■■□□□ 1.33
SNX1-208ENST00000559844 CCDC146Q8IYE0 955 aa23.36■■□□□ 1.33
SNX1-208ENST00000559844 ZBTB7CA1YPR0 619 aa23.36■■□□□ 1.33
SNX1-208ENST00000559844 GOLGA2Q08379 1002 aa23.36■■□□□ 1.33
SNX1-208ENST00000559844 KIAA0232Q92628 1395 aa23.35■■□□□ 1.33
SNX1-208ENST00000559844 MAP3K19Q56UN5 1328 aa23.35■■□□□ 1.33
SNX1-208ENST00000559844 APAF1O14727 1248 aa23.34■■□□□ 1.33
SNX1-208ENST00000559844 ADAMTS2O95450 1211 aa23.34■■□□□ 1.33
SNX1-208ENST00000559844 LRP6O75581 1613 aa23.34■■□□□ 1.33
SNX1-208ENST00000559844 CPDO75976 1380 aa23.33■■□□□ 1.33
SNX1-208ENST00000559844 PEAK1Q9H792 1746 aa23.33■■□□□ 1.33
SNX1-208ENST00000559844 POLKQ9UBT6 870 aa23.33■■□□□ 1.33
SNX1-208ENST00000559844 EMILIN1Q9Y6C2 1016 aa23.33■■□□□ 1.33
SNX1-208ENST00000559844 PPM1GO15355 546 aaPredicted RBP23.32■■□□□ 1.32
SNX1-208ENST00000559844 ARHGEF25Q86VW2 580 aa23.32■■□□□ 1.32
SNX1-208ENST00000559844 PRDM11Q9NQV5 511 aa23.32■■□□□ 1.32
SNX1-208ENST00000559844 RGPD5Q99666 1765 aa23.32■■□□□ 1.32
SNX1-208ENST00000559844 ILDR1Q86SU0 546 aaPredicted RBP23.31■■□□□ 1.32
SNX1-208ENST00000559844 CHRNA2Q15822 529 aa23.31■■□□□ 1.32
SNX1-208ENST00000559844 RUNDC1Q96C34 613 aa23.31■■□□□ 1.32
SNX1-208ENST00000559844 TSHZ2Q9NRE2 1034 aa23.31■■□□□ 1.32
SNX1-208ENST00000559844 COL18A1P39060 1754 aa23.3■■□□□ 1.32
SNX1-208ENST00000559844 AMPHP49418 695 aa23.3■■□□□ 1.32
SNX1-208ENST00000559844 COL14A1Q05707 1796 aaKnown RBP23.29■■□□□ 1.32
SNX1-208ENST00000559844 SLFN5Q08AF3 891 aa23.29■■□□□ 1.32
SNX1-208ENST00000559844 DUSP27Q5VZP5 1158 aa23.29■■□□□ 1.32
SNX1-208ENST00000559844 PLCH1Q4KWH8 1693 aa23.28■■□□□ 1.32
SNX1-208ENST00000559844 FAM83GA6ND36 823 aa23.27■■□□□ 1.32
SNX1-208ENST00000559844 CDK12Q9NYV4 1490 aaPredicted RBP23.27■■□□□ 1.32
SNX1-208ENST00000559844 RTL1A6NKG5 1358 aa23.27■■□□□ 1.32
SNX1-208ENST00000559844 FLT4P35916 1363 aa23.27■■□□□ 1.32
SNX1-208ENST00000559844 LMO7Q8WWI1 1683 aa23.27■■□□□ 1.32
SNX1-208ENST00000559844 NCBP3Q53F19 620 aaKnown RBP23.26■■□□□ 1.31
SNX1-208ENST00000559844 MEX3CQ5U5Q3 659 aaKnown RBP23.26■■□□□ 1.31
SNX1-208ENST00000559844 B4GALNT3Q6L9W6 998 aa23.26■■□□□ 1.31
SNX1-208ENST00000559844 TRMT2AQ8IZ69 625 aaKnown RBP23.26■■□□□ 1.31
SNX1-208ENST00000559844 ABCC6O95255 1503 aa23.26■■□□□ 1.31
SNX1-208ENST00000559844 KIF24Q5T7B8 1368 aa23.26■■□□□ 1.31
SNX1-208ENST00000559844 HOXC9P31274 260 aa23.25■■□□□ 1.31
SNX1-208ENST00000559844 E9PSI1 815 aa23.25■■□□□ 1.31
SNX1-208ENST00000559844 IP6K1Q92551 441 aa23.24■■□□□ 1.31
SNX1-208ENST00000559844 C8orf37Q96NL8 207 aa23.24■■□□□ 1.31
SNX1-208ENST00000559844 HSP90AB2PQ58FF8 381 aa23.23■■□□□ 1.31
SNX1-208ENST00000559844 AXIN2Q9Y2T1 843 aa23.23■■□□□ 1.31
SNX1-208ENST00000559844 COL3A1P02461 1466 aaPredicted RBP23.23■■□□□ 1.31
SNX1-208ENST00000559844 CAMTA1Q9Y6Y1 1673 aa23.23■■□□□ 1.31
SNX1-208ENST00000559844 NWD2Q9ULI1 1742 aa23.21■■□□□ 1.31
SNX1-208ENST00000559844 NGLY1Q96IV0 654 aa23.21■■□□□ 1.31
SNX1-208ENST00000559844 CCDC136Q96JN2 1154 aa23.21■■□□□ 1.31
SNX1-208ENST00000559844 U2AF1L5P0DN76 240 aaPredicted RBP23.2■■□□□ 1.3
SNX1-208ENST00000559844 U2AF1Q01081 240 aaKnown RBP eCLIP23.2■■□□□ 1.3
SNX1-208ENST00000559844 BTG4Q9NY30 223 aa23.2■■□□□ 1.3
SNX1-208ENST00000559844 WWC1Q8IX03 1113 aa23.2■■□□□ 1.3
SNX1-208ENST00000559844 TCP11L2Q8N4U5 519 aa23.2■■□□□ 1.3
SNX1-208ENST00000559844 CCDC27Q2M243 656 aa23.19■■□□□ 1.3
SNX1-208ENST00000559844 LTV1Q96GA3 475 aaPredicted RBP23.19■■□□□ 1.3
SNX1-208ENST00000559844 NRAPQ86VF7 1730 aa23.19■■□□□ 1.3
SNX1-208ENST00000559844 RGPD2P0DJD1 1756 aa23.18■■□□□ 1.3
SNX1-208ENST00000559844 SLIT2O94813 1529 aa23.18■■□□□ 1.3
SNX1-208ENST00000559844 COL5A2P05997 1499 aaPredicted RBP23.18■■□□□ 1.3
SNX1-208ENST00000559844 GOLGA6L2Q8N9W4 650 aaPredicted RBP23.16■■□□□ 1.3
SNX1-208ENST00000559844 ANKRD24Q8TF21 1146 aa23.16■■□□□ 1.3
SNX1-208ENST00000559844 PHF23Q9BUL5 403 aaPredicted RBP23.16■■□□□ 1.3
SNX1-208ENST00000559844 ERBB3P21860 1342 aa23.16■■□□□ 1.3
SNX1-208ENST00000559844 DIAPH1O60610 1272 aaKnown RBP23.16■■□□□ 1.3
SNX1-208ENST00000559844 WDR63Q8IWG1 891 aa23.16■■□□□ 1.3
SNX1-208ENST00000559844 PNNQ9H307 717 aaKnown RBP23.16■■□□□ 1.3
SNX1-208ENST00000559844 STRN4Q9NRL3 753 aa23.16■■□□□ 1.3
SNX1-208ENST00000559844 FAM208AQ9UK61 1670 aaKnown RBP23.15■■□□□ 1.3
SNX1-208ENST00000559844 EVA1CP58658 441 aa23.14■■□□□ 1.3
SNX1-208ENST00000559844 EIF4A2Q14240 407 aaKnown RBP23.14■■□□□ 1.3
SNX1-208ENST00000559844 EXOC6Q8TAG9 804 aa23.14■■□□□ 1.3
SNX1-208ENST00000559844 CSB-PGBD3P0DP91 1061 aa23.14■■□□□ 1.29
SNX1-208ENST00000559844 FNBP4Q8N3X1 1017 aaPredicted RBP23.14■■□□□ 1.29
SNX1-208ENST00000559844 AFF2P51816 1311 aa23.13■■□□□ 1.29
SNX1-208ENST00000559844 TNKS1BP1Q9C0C2 1729 aaKnown RBP23.13■■□□□ 1.29
SNX1-208ENST00000559844 U2SURPO15042 1029 aaKnown RBP23.13■■□□□ 1.29
SNX1-208ENST00000559844 SPINK5Q9NQ38 1064 aaPredicted RBP23.13■■□□□ 1.29
SNX1-208ENST00000559844 BCL9LQ86UU0 1499 aa23.12■■□□□ 1.29
SNX1-208ENST00000559844 IL13P35225 146 aa23.12■■□□□ 1.29
SNX1-208ENST00000559844 USP21Q9UK80 565 aa23.11■■□□□ 1.29
SNX1-208ENST00000559844 WDR17Q8IZU2 1322 aa23.11■■□□□ 1.29
SNX1-208ENST00000559844 UNC5CLQ8IV45 518 aa23.1■■□□□ 1.29
SNX1-208ENST00000559844 RGPD1P0DJD0 1748 aa23.1■■□□□ 1.29
SNX1-208ENST00000559844 NEUROD2Q15784 382 aa23.1■■□□□ 1.29
SNX1-208ENST00000559844 LARP1Q6PKG0 1096 aaKnown RBP23.1■■□□□ 1.29
SNX1-208ENST00000559844 RRP7AQ9Y3A4 280 aaKnown RBP23.1■■□□□ 1.29
SNX1-208ENST00000559844 MAPK8IP3Q9UPT6 1336 aa23.1■■□□□ 1.29
SNX1-208ENST00000559844 PLIN1O60240 522 aa23.09■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 494.4 ms