RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SLC10A4Q96EP9 437 aa11.36□□□□□ -0.59
VPS13C-208ENST00000559119 PTK2Q05397 1052 aa11.35□□□□□ -0.59
VPS13C-208ENST00000559119 MEIOBQ8N635 442 aa11.35□□□□□ -0.59
VPS13C-208ENST00000559119 PNMA1Q8ND90 353 aa11.35□□□□□ -0.59
VPS13C-208ENST00000559119 IRF7Q92985 503 aa11.35□□□□□ -0.59
VPS13C-208ENST00000559119 CDV3Q9UKY7 258 aaKnown RBP11.35□□□□□ -0.59
VPS13C-208ENST00000559119 SOBPA7XYQ1 873 aa11.34□□□□□ -0.59
VPS13C-208ENST00000559119 MAN1A2O60476 641 aa11.34□□□□□ -0.59
VPS13C-208ENST00000559119 LINC00528Q8N1L1 170 aa11.34□□□□□ -0.59
VPS13C-208ENST00000559119 H3BM21 787 aa11.33□□□□□ -0.6
VPS13C-208ENST00000559119 USP17L8P0C7I0 530 aa11.32□□□□□ -0.6
VPS13C-208ENST00000559119 PCMTD1Q96MG8 357 aaPredicted RBP11.32□□□□□ -0.6
VPS13C-208ENST00000559119 KCTD15Q96SI1 283 aaPredicted RBP11.32□□□□□ -0.6
VPS13C-208ENST00000559119 PGPEP1Q9NXJ5 209 aa11.32□□□□□ -0.6
VPS13C-208ENST00000559119 RFC5P40937 340 aa11.31□□□□□ -0.6
VPS13C-208ENST00000559119 NEUROD2Q15784 382 aa11.31□□□□□ -0.6
VPS13C-208ENST00000559119 PPP1R26Q5T8A7 1209 aaPredicted RBP11.31□□□□□ -0.6
VPS13C-208ENST00000559119 TSEN34Q9BSV6 310 aaKnown RBP11.31□□□□□ -0.6
VPS13C-208ENST00000559119 STK17AQ9UEE5 414 aa11.31□□□□□ -0.6
VPS13C-208ENST00000559119 GPSM3Q9Y4H4 160 aa11.31□□□□□ -0.6
VPS13C-208ENST00000559119 GMPRP36959 345 aa11.29□□□□□ -0.6
VPS13C-208ENST00000559119 DHX9Q08211 1270 aaKnown RBP11.29□□□□□ -0.6
VPS13C-208ENST00000559119 EPS8L1Q8TE68 723 aa11.29□□□□□ -0.6
VPS13C-208ENST00000559119 GOPCQ9HD26 462 aa11.29□□□□□ -0.6
VPS13C-208ENST00000559119 HMX1Q9NP08 348 aaPredicted RBP11.29□□□□□ -0.6
VPS13C-208ENST00000559119 ADAM32Q8TC27 787 aa11.28□□□□□ -0.6
VPS13C-208ENST00000559119 IL27Q8NEV9 243 aa11.27□□□□□ -0.61
VPS13C-208ENST00000559119 OCSTAMPQ9BR26 566 aa11.26□□□□□ -0.61
VPS13C-208ENST00000559119 SOS2Q07890 1332 aaPredicted RBP11.26□□□□□ -0.61
VPS13C-208ENST00000559119 CBLBQ13191 982 aa11.25□□□□□ -0.61
VPS13C-208ENST00000559119 NBPF20Q3BBV1 942 aa11.25□□□□□ -0.61
VPS13C-208ENST00000559119 TMEM259Q4ZIN3 620 aa11.25□□□□□ -0.61
VPS13C-208ENST00000559119 ERBB4Q15303 1308 aa11.25□□□□□ -0.61
VPS13C-208ENST00000559119 INTS6LQ5JSJ4 861 aaKnown RBP11.24□□□□□ -0.61
VPS13C-208ENST00000559119 DZIP3Q86Y13 1208 aaKnown RBP11.24□□□□□ -0.61
VPS13C-208ENST00000559119 DNMT3LQ9UJW3 386 aa11.24□□□□□ -0.61
VPS13C-208ENST00000559119 Q6ZVU0 165 aa11.23□□□□□ -0.61
VPS13C-208ENST00000559119 TTLL8A6PVC2 850 aa11.22□□□□□ -0.61
VPS13C-208ENST00000559119 FAM181BA6NEQ2 426 aa11.21□□□□□ -0.61
VPS13C-208ENST00000559119 RAB15P59190 212 aa11.21□□□□□ -0.61
VPS13C-208ENST00000559119 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.21□□□□□ -0.61
VPS13C-208ENST00000559119 PPFIA3O75145 1194 aa11.2□□□□□ -0.62
VPS13C-208ENST00000559119 ZSCAN1Q8NBB4 408 aa11.2□□□□□ -0.62
VPS13C-208ENST00000559119 SPINT1O43278 529 aa11.19□□□□□ -0.62
VPS13C-208ENST00000559119 TRIM34Q9BYJ4 488 aa11.19□□□□□ -0.62
VPS13C-208ENST00000559119 FIGNL2A6NMB9 653 aa11.18□□□□□ -0.62
VPS13C-208ENST00000559119 VSIG8P0DPA2 414 aa11.18□□□□□ -0.62
VPS13C-208ENST00000559119 RELBQ01201 579 aa11.17□□□□□ -0.62
VPS13C-208ENST00000559119 AGBL1Q96MI9 1066 aa11.17□□□□□ -0.62
VPS13C-208ENST00000559119 TMPRSS4Q9NRS4 437 aa11.17□□□□□ -0.62
VPS13C-208ENST00000559119 BRPF1P55201 1214 aaPredicted RBP11.16□□□□□ -0.62
VPS13C-208ENST00000559119 ZNF784Q8NCA9 323 aaPredicted RBP11.15□□□□□ -0.62
VPS13C-208ENST00000559119 ERVH48-1M5A8F1 160 aa11.14□□□□□ -0.63
VPS13C-208ENST00000559119 PTSQ03393 145 aa11.14□□□□□ -0.63
VPS13C-208ENST00000559119 ZBBXA8MT70 800 aa11.13□□□□□ -0.63
VPS13C-208ENST00000559119 TRIM52Q96A61 297 aa11.13□□□□□ -0.63
VPS13C-208ENST00000559119 ESPNB1AK53 854 aa11.12□□□□□ -0.63
VPS13C-208ENST00000559119 GJD4Q96KN9 370 aaPredicted RBP11.12□□□□□ -0.63
VPS13C-208ENST00000559119 INSM2Q96T92 566 aaPredicted RBP11.12□□□□□ -0.63
VPS13C-208ENST00000559119 ZNF395Q9H8N7 513 aaPredicted RBP11.12□□□□□ -0.63
VPS13C-208ENST00000559119 POLMQ9NP87 494 aaPredicted RBP11.12□□□□□ -0.63
VPS13C-208ENST00000559119 ADH1AP07327 375 aa11.11□□□□□ -0.63
VPS13C-208ENST00000559119 LORP23490 312 aaPredicted RBP11.11□□□□□ -0.63
VPS13C-208ENST00000559119 CTSOP43234 321 aaPredicted RBP11.11□□□□□ -0.63
VPS13C-208ENST00000559119 SEPT12Q8IYM1 358 aa11.11□□□□□ -0.63
VPS13C-208ENST00000559119 PCDHB9Q9Y5E1 797 aa11.11□□□□□ -0.63
VPS13C-208ENST00000559119 LILRA1O75019 489 aa11.09□□□□□ -0.63
VPS13C-208ENST00000559119 ADD1P35611 737 aaKnown RBP11.09□□□□□ -0.63
VPS13C-208ENST00000559119 CCDC155Q8N6L0 562 aa11.09□□□□□ -0.63
VPS13C-208ENST00000559119 FBXO45P0C2W1 286 aa11.08□□□□□ -0.64
VPS13C-208ENST00000559119 CYLDQ9NQC7 956 aa11.08□□□□□ -0.64
VPS13C-208ENST00000559119 GIGYF1O75420 1035 aaPredicted RBP11.07□□□□□ -0.64
VPS13C-208ENST00000559119 PTGIRP43119 386 aa11.07□□□□□ -0.64
VPS13C-208ENST00000559119 TPRNQ4KMQ1 711 aa11.07□□□□□ -0.64
VPS13C-208ENST00000559119 BANK1Q8NDB2 785 aa11.07□□□□□ -0.64
VPS13C-208ENST00000559119 RNF217Q8TC41 542 aa11.06□□□□□ -0.64
VPS13C-208ENST00000559119 SLC35F4A4IF30 521 aa11.05□□□□□ -0.64
VPS13C-208ENST00000559119 ZNF330Q9Y3S2 320 aaPredicted RBP11.05□□□□□ -0.64
VPS13C-208ENST00000559119 APBB1O00213 710 aa11.04□□□□□ -0.64
VPS13C-208ENST00000559119 NR1H3Q13133 447 aa11.04□□□□□ -0.64
VPS13C-208ENST00000559119 RNF20Q5VTR2 975 aa11.04□□□□□ -0.64
VPS13C-208ENST00000559119 CCDC125Q86Z20 511 aa11.04□□□□□ -0.64
VPS13C-208ENST00000559119 ZNF592Q92610 1267 aa11.04□□□□□ -0.64
VPS13C-208ENST00000559119 MCCD1P59942 119 aaPredicted RBP11.03□□□□□ -0.64
VPS13C-208ENST00000559119 GPR161Q8N6U8 529 aaKnown RBP11.03□□□□□ -0.64
VPS13C-208ENST00000559119 NDUFB9Q9Y6M9 179 aa11.03□□□□□ -0.64
VPS13C-208ENST00000559119 ITGA6P23229 1130 aa11.02□□□□□ -0.65
VPS13C-208ENST00000559119 KDF1Q8NAX2 398 aaPredicted RBP11.02□□□□□ -0.65
VPS13C-208ENST00000559119 NANOS1Q8WY41 292 aaKnown RBP11.02□□□□□ -0.65
VPS13C-208ENST00000559119 CDC14CA4D256 554 aa11.01□□□□□ -0.65
VPS13C-208ENST00000559119 ATP5J2-PTCD1G3V325 749 aa11.01□□□□□ -0.65
VPS13C-208ENST00000559119 SOCS7O14512 581 aa11.01□□□□□ -0.65
VPS13C-208ENST00000559119 FOXD4L5Q5VV16 416 aaPredicted RBP11.01□□□□□ -0.65
VPS13C-208ENST00000559119 LYSMD3Q7Z3D4 306 aa11.01□□□□□ -0.65
VPS13C-208ENST00000559119 MTMR14Q8NCE2 650 aa11.01□□□□□ -0.65
VPS13C-208ENST00000559119 CNTNAP3BQ96NU0 1288 aa11.01□□□□□ -0.65
VPS13C-208ENST00000559119 CNTNAP3Q9BZ76 1288 aa11.01□□□□□ -0.65
VPS13C-208ENST00000559119 SV2AQ7L0J3 742 aa10.99□□□□□ -0.65
VPS13C-208ENST00000559119 VWA5B2Q8N398 1253 aa10.99□□□□□ -0.65
VPS13C-208ENST00000559119 COL25A1Q9BXS0 654 aaPredicted RBP10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms