RNA–Protein interactions for RNA: ENST00000558218.5

USP3-207, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 717 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-207ENST00000558218 EVA1CP58658 441 aa14.29□□□□□ -0.12
USP3-207ENST00000558218 NLRP6P59044 892 aa14.29□□□□□ -0.12
USP3-207ENST00000558218 KRT27Q7Z3Y8 459 aa14.29□□□□□ -0.12
USP3-207ENST00000558218 TTC21AQ8NDW8 1320 aa14.29□□□□□ -0.12
USP3-207ENST00000558218 NRAPQ86VF7 1730 aa14.29□□□□□ -0.12
USP3-207ENST00000558218 CPSF1Q10570 1443 aaKnown RBP14.28□□□□□ -0.12
USP3-207ENST00000558218 PHRF1Q9P1Y6 1649 aaKnown RBP14.27□□□□□ -0.12
USP3-207ENST00000558218 SPATA31A1Q5TZJ5 1347 aa14.27□□□□□ -0.12
USP3-207ENST00000558218 TTC21BQ7Z4L5 1316 aa14.27□□□□□ -0.12
USP3-207ENST00000558218 MIER1Q8N108 512 aa14.27□□□□□ -0.13
USP3-207ENST00000558218 KCNH5Q8NCM2 988 aa14.27□□□□□ -0.13
USP3-207ENST00000558218 CHRNA2Q15822 529 aa14.26□□□□□ -0.13
USP3-207ENST00000558218 FAM98CQ17RN3 349 aaKnown RBP14.26□□□□□ -0.13
USP3-207ENST00000558218 BARGINQ6ZT62 677 aa14.26□□□□□ -0.13
USP3-207ENST00000558218 BLMP54132 1417 aaPredicted RBP14.25□□□□□ -0.13
USP3-207ENST00000558218 THRAP3Q9Y2W1 955 aaKnown RBP14.25□□□□□ -0.13
USP3-207ENST00000558218 BRWD3Q6RI45 1802 aa14.25□□□□□ -0.13
USP3-207ENST00000558218 AATKQ6ZMQ8 1374 aa14.24□□□□□ -0.13
USP3-207ENST00000558218 KTN1Q86UP2 1357 aaKnown RBP14.24□□□□□ -0.13
USP3-207ENST00000558218 SF3B2Q13435 895 aaKnown RBP14.24□□□□□ -0.13
USP3-207ENST00000558218 STRN4Q9NRL3 753 aa14.24□□□□□ -0.13
USP3-207ENST00000558218 TERF2IPQ9NYB0 399 aa14.24□□□□□ -0.13
USP3-207ENST00000558218 NRKQ7Z2Y5 1582 aa14.24□□□□□ -0.13
USP3-207ENST00000558218 AKAP12Q02952 1782 aa14.24□□□□□ -0.13
USP3-207ENST00000558218 ST20-MTHFSA0A0A6YYL1 179 aa14.23□□□□□ -0.13
USP3-207ENST00000558218 A0A0G2JS52 829 aa14.23□□□□□ -0.13
USP3-207ENST00000558218 MYT1Q01538 1121 aa14.23□□□□□ -0.13
USP3-207ENST00000558218 HDGFL2Q7Z4V5 671 aaPredicted RBP14.23□□□□□ -0.13
USP3-207ENST00000558218 TESK2Q96S53 571 aa14.23□□□□□ -0.13
USP3-207ENST00000558218 SLIT3O75094 1523 aa14.23□□□□□ -0.13
USP3-207ENST00000558218 CAMTA1Q9Y6Y1 1673 aa14.23□□□□□ -0.13
USP3-207ENST00000558218 NINLQ9Y2I6 1382 aa14.22□□□□□ -0.13
USP3-207ENST00000558218 TCP11L2Q8N4U5 519 aa14.22□□□□□ -0.13
USP3-207ENST00000558218 USP31Q70CQ4 1352 aa14.22□□□□□ -0.13
USP3-207ENST00000558218 C19orf67A6NJJ6 358 aa14.21□□□□□ -0.13
USP3-207ENST00000558218 C11orf95C9JLR9 678 aaPredicted RBP14.21□□□□□ -0.13
USP3-207ENST00000558218 ARHGEF25Q86VW2 580 aa14.21□□□□□ -0.13
USP3-207ENST00000558218 PLCD3Q8N3E9 789 aa14.21□□□□□ -0.13
USP3-207ENST00000558218 TMC1Q8TDI8 760 aa14.21□□□□□ -0.13
USP3-207ENST00000558218 SLC12A5Q9H2X9 1139 aa14.21□□□□□ -0.13
USP3-207ENST00000558218 LMO7Q8WWI1 1683 aa14.2□□□□□ -0.14
USP3-207ENST00000558218 CDCA8Q53HL2 280 aa14.2□□□□□ -0.14
USP3-207ENST00000558218 LARP1Q6PKG0 1096 aaKnown RBP14.2□□□□□ -0.14
USP3-207ENST00000558218 MNX1P50219 401 aaPredicted RBP14.19□□□□□ -0.14
USP3-207ENST00000558218 FAM196AQ6ZSG2 479 aa14.19□□□□□ -0.14
USP3-207ENST00000558218 PCGF6Q9BYE7 350 aa14.19□□□□□ -0.14
USP3-207ENST00000558218 ZRANB1Q9UGI0 708 aa14.19□□□□□ -0.14
USP3-207ENST00000558218 PIK3C2AO00443 1686 aa14.19□□□□□ -0.14
USP3-207ENST00000558218 THSD7AQ9UPZ6 1657 aa14.19□□□□□ -0.14
USP3-207ENST00000558218 CD163L1Q9NR16 1453 aa14.18□□□□□ -0.14
USP3-207ENST00000558218 TMF1P82094 1093 aa14.18□□□□□ -0.14
USP3-207ENST00000558218 PDE3BQ13370 1112 aa14.18□□□□□ -0.14
USP3-207ENST00000558218 MON2Q7Z3U7 1717 aa14.18□□□□□ -0.14
USP3-207ENST00000558218 COL5A2P05997 1499 aaPredicted RBP14.18□□□□□ -0.14
USP3-207ENST00000558218 CRB1P82279 1406 aa14.17□□□□□ -0.14
USP3-207ENST00000558218 EDC4Q6P2E9 1401 aaKnown RBP14.17□□□□□ -0.14
USP3-207ENST00000558218 CD44P16070 742 aaKnown RBP14.17□□□□□ -0.14
USP3-207ENST00000558218 CDCA7Q9BWT1 371 aaPredicted RBP14.17□□□□□ -0.14
USP3-207ENST00000558218 USP35Q9P2H5 1018 aa14.17□□□□□ -0.14
USP3-207ENST00000558218 BAG6P46379 1132 aa14.16□□□□□ -0.14
USP3-207ENST00000558218 SUGP2Q8IX01 1082 aaKnown RBP eCLIP14.16□□□□□ -0.14
USP3-207ENST00000558218 AXIN2Q9Y2T1 843 aa14.16□□□□□ -0.14
USP3-207ENST00000558218 USP47Q96K76 1375 aa14.16□□□□□ -0.14
USP3-207ENST00000558218 WDR17Q8IZU2 1322 aa14.15□□□□□ -0.14
USP3-207ENST00000558218 COL18A1P39060 1754 aa14.15□□□□□ -0.14
USP3-207ENST00000558218 TOM1L2Q6ZVM7 507 aa14.15□□□□□ -0.14
USP3-207ENST00000558218 ABCC6O95255 1503 aa14.15□□□□□ -0.14
USP3-207ENST00000558218 A0A1W2PP64 1363 aa14.14□□□□□ -0.15
USP3-207ENST00000558218 ZBTB7CA1YPR0 619 aa14.14□□□□□ -0.15
USP3-207ENST00000558218 NME9Q86XW9 330 aa14.14□□□□□ -0.15
USP3-207ENST00000558218 CARD10Q9BWT7 1032 aa14.14□□□□□ -0.15
USP3-207ENST00000558218 USP54Q70EL1 1684 aa14.14□□□□□ -0.15
USP3-207ENST00000558218 EP400Q96L91 3159 aa14.13□□□□□ -0.15
USP3-207ENST00000558218 DEFB132Q7Z7B7 95 aa14.13□□□□□ -0.15
USP3-207ENST00000558218 FBXO3Q9UK99 471 aa14.13□□□□□ -0.15
USP3-207ENST00000558218 NFAT5O94916 1531 aa14.12□□□□□ -0.15
USP3-207ENST00000558218 DISP2A7MBM2 1401 aa14.12□□□□□ -0.15
USP3-207ENST00000558218 ANKRD36BQ8N2N9 1353 aa14.11□□□□□ -0.15
USP3-207ENST00000558218 RGPD1P0DJD0 1748 aa14.1□□□□□ -0.15
USP3-207ENST00000558218 SOX12O15370 315 aa14.1□□□□□ -0.15
USP3-207ENST00000558218 CSB-PGBD3P0DP91 1061 aa14.1□□□□□ -0.15
USP3-207ENST00000558218 DDB1Q16531 1140 aa14.1□□□□□ -0.15
USP3-207ENST00000558218 FAM182BQ5T319 152 aa14.1□□□□□ -0.15
USP3-207ENST00000558218 CCER1Q8TC90 406 aaPredicted RBP14.1□□□□□ -0.15
USP3-207ENST00000558218 COG3Q96JB2 828 aa14.1□□□□□ -0.15
USP3-207ENST00000558218 PARP4Q9UKK3 1724 aaKnown RBP14.1□□□□□ -0.15
USP3-207ENST00000558218 CCDC7Q96M83 1385 aa14.09□□□□□ -0.15
USP3-207ENST00000558218 TRIM37O94972 964 aa14.09□□□□□ -0.15
USP3-207ENST00000558218 PARD3Q8TEW0 1356 aa14.09□□□□□ -0.15
USP3-207ENST00000558218 OVOS2A0A0J9YW53 1432 aa14.08□□□□□ -0.15
USP3-207ENST00000558218 OVOS2Q6IE36 1432 aa14.08□□□□□ -0.15
USP3-207ENST00000558218 IP6K1Q92551 441 aa14.08□□□□□ -0.16
USP3-207ENST00000558218 EXOC5O00471 708 aa14.07□□□□□ -0.16
USP3-207ENST00000558218 EN1Q05925 392 aaPredicted RBP14.07□□□□□ -0.16
USP3-207ENST00000558218 ERBB3P21860 1342 aa14.07□□□□□ -0.16
USP3-207ENST00000558218 BCL9O00512 1426 aa14.07□□□□□ -0.16
USP3-207ENST00000558218 RGPD5Q99666 1765 aa14.06□□□□□ -0.16
USP3-207ENST00000558218 FYB1O15117 783 aa14.06□□□□□ -0.16
USP3-207ENST00000558218 APBA3O96018 575 aa14.06□□□□□ -0.16
USP3-207ENST00000558218 CAMKK2Q96RR4 588 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms