RNA–Protein interactions for RNA: ENST00000557845.1

NEDD4-212, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 374 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-212ENST00000557845 FAM182BQ5T319 152 aa23.42■■□□□ 1.34
NEDD4-212ENST00000557845 SF3B2Q13435 895 aaKnown RBP23.41■■□□□ 1.34
NEDD4-212ENST00000557845 RGPD5Q99666 1765 aa23.4■■□□□ 1.34
NEDD4-212ENST00000557845 USP54Q70EL1 1684 aa23.4■■□□□ 1.34
NEDD4-212ENST00000557845 CRB1P82279 1406 aa23.4■■□□□ 1.34
NEDD4-212ENST00000557845 NFAT5O94916 1531 aa23.39■■□□□ 1.34
NEDD4-212ENST00000557845 TOM1L2Q6ZVM7 507 aa23.38■■□□□ 1.33
NEDD4-212ENST00000557845 DEFB132Q7Z7B7 95 aa23.38■■□□□ 1.33
NEDD4-212ENST00000557845 CDCA8Q53HL2 280 aa23.37■■□□□ 1.33
NEDD4-212ENST00000557845 WDR17Q8IZU2 1322 aa23.36■■□□□ 1.33
NEDD4-212ENST00000557845 PDE3BQ13370 1112 aa23.36■■□□□ 1.33
NEDD4-212ENST00000557845 ANKRD36BQ8N2N9 1353 aa23.35■■□□□ 1.33
NEDD4-212ENST00000557845 FAM196AQ6ZSG2 479 aa23.34■■□□□ 1.33
NEDD4-212ENST00000557845 CSB-PGBD3P0DP91 1061 aa23.32■■□□□ 1.32
NEDD4-212ENST00000557845 OVOS2A0A0J9YW53 1432 aa23.32■■□□□ 1.32
NEDD4-212ENST00000557845 OVOS2Q6IE36 1432 aa23.32■■□□□ 1.32
NEDD4-212ENST00000557845 LTN1O94822 1766 aa23.32■■□□□ 1.32
NEDD4-212ENST00000557845 PARP4Q9UKK3 1724 aaKnown RBP23.31■■□□□ 1.32
NEDD4-212ENST00000557845 ABCC6O95255 1503 aa23.31■■□□□ 1.32
NEDD4-212ENST00000557845 BAG6P46379 1132 aa23.3■■□□□ 1.32
NEDD4-212ENST00000557845 COG3Q96JB2 828 aa23.3■■□□□ 1.32
NEDD4-212ENST00000557845 CARD10Q9BWT7 1032 aa23.3■■□□□ 1.32
NEDD4-212ENST00000557845 RGPD1P0DJD0 1748 aa23.3■■□□□ 1.32
NEDD4-212ENST00000557845 FYB1O15117 783 aa23.27■■□□□ 1.32
NEDD4-212ENST00000557845 TRIM37O94972 964 aa23.27■■□□□ 1.32
NEDD4-212ENST00000557845 CDCA7Q9BWT1 371 aaPredicted RBP23.27■■□□□ 1.32
NEDD4-212ENST00000557845 DDB1Q16531 1140 aa23.26■■□□□ 1.31
NEDD4-212ENST00000557845 EIF4G2P78344 907 aaKnown RBP eCLIP23.25■■□□□ 1.31
NEDD4-212ENST00000557845 EN1Q05925 392 aaPredicted RBP23.25■■□□□ 1.31
NEDD4-212ENST00000557845 WNK3Q9BYP7 1800 aa23.24■■□□□ 1.31
NEDD4-212ENST00000557845 IP6K1Q92551 441 aa23.24■■□□□ 1.31
NEDD4-212ENST00000557845 ERBB3P21860 1342 aa23.24■■□□□ 1.31
NEDD4-212ENST00000557845 TNS1Q9HBL0 1735 aaKnown RBP23.24■■□□□ 1.31
NEDD4-212ENST00000557845 CCDC7Q96M83 1385 aa23.24■■□□□ 1.31
NEDD4-212ENST00000557845 HSPA5P11021 654 aaKnown RBP23.23■■□□□ 1.31
NEDD4-212ENST00000557845 FBLN1P23142 703 aa23.23■■□□□ 1.31
NEDD4-212ENST00000557845 ANKRD24Q8TF21 1146 aa23.23■■□□□ 1.31
NEDD4-212ENST00000557845 GGNBP2Q9H3C7 697 aa23.23■■□□□ 1.31
NEDD4-212ENST00000557845 LRRC37A3O60309 1634 aa23.22■■□□□ 1.31
NEDD4-212ENST00000557845 MYOM1P52179 1685 aa23.22■■□□□ 1.31
NEDD4-212ENST00000557845 C11orf95C9JLR9 678 aaPredicted RBP23.22■■□□□ 1.31
NEDD4-212ENST00000557845 CARD14Q9BXL6 1004 aa23.22■■□□□ 1.31
NEDD4-212ENST00000557845 NLRP2Q9NX02 1062 aa23.22■■□□□ 1.31
NEDD4-212ENST00000557845 APBA3O96018 575 aa23.21■■□□□ 1.31
NEDD4-212ENST00000557845 DISP2A7MBM2 1401 aa23.2■■□□□ 1.3
NEDD4-212ENST00000557845 MAP3K19Q56UN5 1328 aa23.2■■□□□ 1.3
NEDD4-212ENST00000557845 EXOC5O00471 708 aa23.2■■□□□ 1.3
NEDD4-212ENST00000557845 HOXC9P31274 260 aa23.18■■□□□ 1.3
NEDD4-212ENST00000557845 AMPHP49418 695 aa23.18■■□□□ 1.3
NEDD4-212ENST00000557845 EZH2Q15910 746 aaKnown RBP23.18■■□□□ 1.3
NEDD4-212ENST00000557845 MARCH10Q8NA82 808 aaPredicted RBP23.18■■□□□ 1.3
NEDD4-212ENST00000557845 CAMKK2Q96RR4 588 aa23.18■■□□□ 1.3
NEDD4-212ENST00000557845 POLR3GLQ9BT43 218 aa23.18■■□□□ 1.3
NEDD4-212ENST00000557845 PEAK1Q9H792 1746 aa23.18■■□□□ 1.3
NEDD4-212ENST00000557845 OVOS2A0A0G2JMS6 1433 aa23.17■■□□□ 1.3
NEDD4-212ENST00000557845 KIF20BQ96Q89 1820 aa23.17■■□□□ 1.3
NEDD4-212ENST00000557845 LTV1Q96GA3 475 aaPredicted RBP23.16■■□□□ 1.3
NEDD4-212ENST00000557845 SBF2Q86WG5 1849 aa23.16■■□□□ 1.3
NEDD4-212ENST00000557845 IL2RBP14784 551 aa23.15■■□□□ 1.3
NEDD4-212ENST00000557845 RRS1Q15050 365 aaKnown RBP23.15■■□□□ 1.3
NEDD4-212ENST00000557845 NSD3Q9BZ95 1437 aa23.15■■□□□ 1.3
NEDD4-212ENST00000557845 BCL9O00512 1426 aa23.11■■□□□ 1.29
NEDD4-212ENST00000557845 FAM208AQ9UK61 1670 aaKnown RBP23.11■■□□□ 1.29
NEDD4-212ENST00000557845 PARD3Q8TEW0 1356 aa23.11■■□□□ 1.29
NEDD4-212ENST00000557845 BCL11BQ9C0K0 894 aaPredicted RBP23.1■■□□□ 1.29
NEDD4-212ENST00000557845 RTL1A6NKG5 1358 aa23.1■■□□□ 1.29
NEDD4-212ENST00000557845 TNS2Q63HR2 1409 aa23.09■■□□□ 1.29
NEDD4-212ENST00000557845 CGNL1Q0VF96 1302 aa23.08■■□□□ 1.29
NEDD4-212ENST00000557845 PSDA5PKW4 1024 aaPredicted RBP23.08■■□□□ 1.29
NEDD4-212ENST00000557845 PTF1AQ7RTS3 328 aa23.08■■□□□ 1.29
NEDD4-212ENST00000557845 RGPD2P0DJD1 1756 aa23.08■■□□□ 1.29
NEDD4-212ENST00000557845 PLSCR1O15162 318 aa23.07■■□□□ 1.28
NEDD4-212ENST00000557845 HSP90AB2PQ58FF8 381 aa23.06■■□□□ 1.28
NEDD4-212ENST00000557845 PANK3Q9H999 370 aa23.06■■□□□ 1.28
NEDD4-212ENST00000557845 RREB1Q92766 1687 aa23.05■■□□□ 1.28
NEDD4-212ENST00000557845 KIF24Q5T7B8 1368 aa23.04■■□□□ 1.28
NEDD4-212ENST00000557845 R3HDM1Q15032 1099 aaKnown RBP23.04■■□□□ 1.28
NEDD4-212ENST00000557845 NBPF6Q5VWK0 638 aa23.04■■□□□ 1.28
NEDD4-212ENST00000557845 NBPF4Q96M43 638 aa23.04■■□□□ 1.28
NEDD4-212ENST00000557845 INSRP06213 1382 aa23.03■■□□□ 1.28
NEDD4-212ENST00000557845 FLT4P35916 1363 aa23.03■■□□□ 1.28
NEDD4-212ENST00000557845 MAP2P11137 1827 aaKnown RBP23.03■■□□□ 1.28
NEDD4-212ENST00000557845 EMILIN1Q9Y6C2 1016 aa23.02■■□□□ 1.28
NEDD4-212ENST00000557845 KCNQ2O43526 872 aa23.01■■□□□ 1.27
NEDD4-212ENST00000557845 NBPF14Q5TI25 921 aa23.01■■□□□ 1.27
NEDD4-212ENST00000557845 NUP188Q5SRE5 1749 aa23.01■■□□□ 1.27
NEDD4-212ENST00000557845 SMG6Q86US8 1419 aaKnown RBP23■■□□□ 1.27
NEDD4-212ENST00000557845 RGPD3A6NKT7 1758 aaPredicted RBP23■■□□□ 1.27
NEDD4-212ENST00000557845 RGPD4Q7Z3J3 1758 aa23■■□□□ 1.27
NEDD4-212ENST00000557845 DDX54Q8TDD1 881 aaKnown RBP23■■□□□ 1.27
NEDD4-212ENST00000557845 ACSBG1Q96GR2 724 aa23■■□□□ 1.27
NEDD4-212ENST00000557845 PPM1GO15355 546 aaPredicted RBP22.99■■□□□ 1.27
NEDD4-212ENST00000557845 PROM2Q8N271 834 aa22.98■■□□□ 1.27
NEDD4-212ENST00000557845 USHBP1Q8N6Y0 703 aa22.98■■□□□ 1.27
NEDD4-212ENST00000557845 ANKRD26Q9UPS8 1709 aa22.98■■□□□ 1.27
NEDD4-212ENST00000557845 KAT6BQ8WYB5 2073 aa22.97■■□□□ 1.27
NEDD4-212ENST00000557845 ZCRB1Q8TBF4 217 aaKnown RBP22.97■■□□□ 1.27
NEDD4-212ENST00000557845 POLKQ9UBT6 870 aa22.97■■□□□ 1.27
NEDD4-212ENST00000557845 NHSQ6T4R5 1651 aa22.97■■□□□ 1.27
NEDD4-212ENST00000557845 WASHC2AQ641Q2 1341 aa22.96■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms