RNA–Protein interactions for RNA: ENST00000557538.5

HIF1A-212, Transcript of hypoxia inducible factor 1 subunit alpha, humanhuman

TSL 1 (best) BASIC

Gene HIF1A, Length 3,468 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF1A-212ENST00000557538 KCNA1Q09470 495 aa3.29□□□□□ -1.88
HIF1A-212ENST00000557538 ERFEQ4G0M1 354 aa3.29□□□□□ -1.88
HIF1A-212ENST00000557538 TFIP11Q9UBB9 837 aaKnown RBP3.29□□□□□ -1.88
HIF1A-212ENST00000557538 CD2BP2O95400 341 aaKnown RBP3.29□□□□□ -1.88
HIF1A-212ENST00000557538 PLA2G2CQ5R387 149 aa3.29□□□□□ -1.88
HIF1A-212ENST00000557538 PPP1R18Q6NYC8 613 aa3.29□□□□□ -1.88
HIF1A-212ENST00000557538 TBC1D9Q6ZT07 1266 aa3.29□□□□□ -1.88
HIF1A-212ENST00000557538 TSC1Q92574 1164 aa3.29□□□□□ -1.88
HIF1A-212ENST00000557538 SIRT1Q96EB6 747 aa3.29□□□□□ -1.88
HIF1A-212ENST00000557538 TMEM88BA6NKF7 163 aa3.28□□□□□ -1.88
HIF1A-212ENST00000557538 SKOR1P84550 965 aa3.28□□□□□ -1.88
HIF1A-212ENST00000557538 TRIM32Q13049 653 aa3.28□□□□□ -1.88
HIF1A-212ENST00000557538 TRIM50Q86XT4 487 aa3.28□□□□□ -1.88
HIF1A-212ENST00000557538 LARGE2Q8N3Y3 721 aa3.28□□□□□ -1.88
HIF1A-212ENST00000557538 CDCA7Q9BWT1 371 aaPredicted RBP3.28□□□□□ -1.88
HIF1A-212ENST00000557538 VRTNQ9H8Y1 702 aa3.28□□□□□ -1.88
HIF1A-212ENST00000557538 RNF135Q8IUD6 432 aa3.28□□□□□ -1.88
HIF1A-212ENST00000557538 PRR20EP86478 221 aa3.28□□□□□ -1.88
HIF1A-212ENST00000557538 PRR20CP86479 221 aa3.28□□□□□ -1.88
HIF1A-212ENST00000557538 PRR20DP86480 221 aa3.28□□□□□ -1.88
HIF1A-212ENST00000557538 PRR20BP86481 221 aa3.28□□□□□ -1.88
HIF1A-212ENST00000557538 PRR20AP86496 221 aa3.28□□□□□ -1.88
HIF1A-212ENST00000557538 PLPP7Q8NBV4 271 aa3.28□□□□□ -1.88
HIF1A-212ENST00000557538 FOXJ1Q92949 421 aa3.28□□□□□ -1.88
HIF1A-212ENST00000557538 GNEQ9Y223 722 aaKnown RBP3.28□□□□□ -1.88
HIF1A-212ENST00000557538 USP17L3A6NCW0 530 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L4A6NCW7 530 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L5A8MUK1 530 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 BRD1O95696 1058 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 ERVK-9P63128 1117 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 NR5A1Q13285 461 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L2Q6R6M4 530 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 POTEAQ6S8J7 498 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 LIAT1Q6ZQX7 453 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L1Q7RTZ2 530 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 ZBTB33Q86T24 672 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 COL26A1Q96A83 441 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 PTK7Q13308 1070 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 NBPF20Q3BBV1 942 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 SLFNL1Q499Z3 407 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 CCDC85AQ96PX6 553 aaPredicted RBP3.27□□□□□ -1.89
HIF1A-212ENST00000557538 ZBTB7BO15156 539 aaPredicted RBP3.27□□□□□ -1.89
HIF1A-212ENST00000557538 ZBTB24O43167 697 aaPredicted RBP3.27□□□□□ -1.89
HIF1A-212ENST00000557538 DHX9Q08211 1270 aaKnown RBP3.27□□□□□ -1.89
HIF1A-212ENST00000557538 FAM69CQ0P6D2 419 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 SWI5Q1ZZU3 235 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 ZNF598Q86UK7 904 aaKnown RBP3.27□□□□□ -1.89
HIF1A-212ENST00000557538 DZIP3Q86Y13 1208 aaKnown RBP3.27□□□□□ -1.89
HIF1A-212ENST00000557538 STAG2Q8N3U4 1231 aa3.27□□□□□ -1.89
HIF1A-212ENST00000557538 CLP1Q92989 425 aaKnown RBP3.27□□□□□ -1.89
HIF1A-212ENST00000557538 GRM5P41594 1212 aa3.26□□□□□ -1.89
HIF1A-212ENST00000557538 EML3Q32P44 896 aa3.26□□□□□ -1.89
HIF1A-212ENST00000557538 PCDHGA11Q9Y5H2 935 aa3.26□□□□□ -1.89
HIF1A-212ENST00000557538 ATP1A2P50993 1020 aa3.26□□□□□ -1.89
HIF1A-212ENST00000557538 SPRYD7Q5W111 196 aa3.26□□□□□ -1.89
HIF1A-212ENST00000557538 SLC4A9Q96Q91 983 aa3.26□□□□□ -1.89
HIF1A-212ENST00000557538 PCDHB9Q9Y5E1 797 aa3.26□□□□□ -1.89
HIF1A-212ENST00000557538 HRH3Q9Y5N1 445 aa3.26□□□□□ -1.89
HIF1A-212ENST00000557538 B4GALNT3Q6L9W6 998 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 GAS2L2Q8NHY3 880 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 PKD2L1Q9P0L9 805 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 PIK3CDO00329 1044 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 GIGYF1O75420 1035 aaPredicted RBP3.25□□□□□ -1.89
HIF1A-212ENST00000557538 LMOD1P29536 600 aaPredicted RBP3.25□□□□□ -1.89
HIF1A-212ENST00000557538 USP4Q13107 963 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 RC3H1Q5TC82 1133 aaKnown RBP3.25□□□□□ -1.89
HIF1A-212ENST00000557538 CCDC24Q8N4L8 307 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 ZMIZ1Q9ULJ6 1067 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L15C9J2P7 530 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L10C9JJH3 530 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L13C9JLJ4 530 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L12C9JPN9 530 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L11C9JVI0 530 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L21D6R901 530 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L18D6R9N7 530 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L22D6RA61 530 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L17D6RBQ6 530 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L19D6RCP7 530 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L20D6RJB6 530 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 ADH1CP00326 375 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 PDIA4P13667 645 aaKnown RBP3.25□□□□□ -1.89
HIF1A-212ENST00000557538 SLC19A1P41440 591 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 USP17L24Q0WX57 530 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 RETREG2Q8NC44 543 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 SLC10A4Q96EP9 437 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 NOD1Q9Y239 953 aa3.25□□□□□ -1.89
HIF1A-212ENST00000557538 SKIP12755 728 aa3.24□□□□□ -1.89
HIF1A-212ENST00000557538 SNIP1Q8TAD8 396 aaKnown RBP3.24□□□□□ -1.89
HIF1A-212ENST00000557538 KCTD15Q96SI1 283 aaPredicted RBP3.24□□□□□ -1.89
HIF1A-212ENST00000557538 KLF16Q9BXK1 252 aaPredicted RBP3.24□□□□□ -1.89
HIF1A-212ENST00000557538 DOLKQ9UPQ8 538 aa3.24□□□□□ -1.89
HIF1A-212ENST00000557538 PPEF1O14829 653 aaPredicted RBP3.24□□□□□ -1.89
HIF1A-212ENST00000557538 CSB-PGBD3P0DP91 1061 aa3.24□□□□□ -1.89
HIF1A-212ENST00000557538 GDF9O60383 454 aa3.24□□□□□ -1.89
HIF1A-212ENST00000557538 Q6ZVU0 165 aa3.24□□□□□ -1.89
HIF1A-212ENST00000557538 TAS1R3Q7RTX0 852 aa3.24□□□□□ -1.89
HIF1A-212ENST00000557538 ANKMY2Q8IV38 441 aa3.24□□□□□ -1.89
HIF1A-212ENST00000557538 XAGE2Q96GT9 111 aa3.24□□□□□ -1.89
HIF1A-212ENST00000557538 TOR4AQ9NXH8 423 aa3.24□□□□□ -1.89
HIF1A-212ENST00000557538 LILRA1O75019 489 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms