RNA–Protein interactions for RNA: ENST00000557466.1

VIPAS39-210, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-210ENST00000557466 GLI3P10071 1580 aa20.35■□□□□ 0.85
VIPAS39-210ENST00000557466 MAP3K19Q56UN5 1328 aa20.33■□□□□ 0.85
VIPAS39-210ENST00000557466 RRS1Q15050 365 aaKnown RBP20.32■□□□□ 0.84
VIPAS39-210ENST00000557466 QTRT2Q9H974 415 aaKnown RBP20.32■□□□□ 0.84
VIPAS39-210ENST00000557466 TRPC5Q9UL62 973 aaPredicted RBP20.32■□□□□ 0.84
VIPAS39-210ENST00000557466 NPC1L1Q9UHC9 1359 aa20.32■□□□□ 0.84
VIPAS39-210ENST00000557466 AXIN2Q9Y2T1 843 aa20.31■□□□□ 0.84
VIPAS39-210ENST00000557466 WNK3Q9BYP7 1800 aa20.3■□□□□ 0.84
VIPAS39-210ENST00000557466 FAM208AQ9UK61 1670 aaKnown RBP20.3■□□□□ 0.84
VIPAS39-210ENST00000557466 ZNF316A6NFI3 1004 aaPredicted RBP20.3■□□□□ 0.84
VIPAS39-210ENST00000557466 VPS72Q15906 364 aa20.3■□□□□ 0.84
VIPAS39-210ENST00000557466 CC2D1BQ5T0F9 858 aaKnown RBP20.3■□□□□ 0.84
VIPAS39-210ENST00000557466 STRN4Q9NRL3 753 aa20.3■□□□□ 0.84
VIPAS39-210ENST00000557466 RTL1A6NKG5 1358 aa20.3■□□□□ 0.84
VIPAS39-210ENST00000557466 BLMP54132 1417 aaPredicted RBP20.29■□□□□ 0.84
VIPAS39-210ENST00000557466 DDX10Q13206 875 aaKnown RBP20.29■□□□□ 0.84
VIPAS39-210ENST00000557466 MORC1Q86VD1 984 aa20.29■□□□□ 0.84
VIPAS39-210ENST00000557466 RGPD2P0DJD1 1756 aa20.29■□□□□ 0.84
VIPAS39-210ENST00000557466 SOCS7O14512 581 aa20.28■□□□□ 0.84
VIPAS39-210ENST00000557466 TNNT2P45379 298 aaPredicted RBP20.28■□□□□ 0.84
VIPAS39-210ENST00000557466 SMG6Q86US8 1419 aaKnown RBP20.27■□□□□ 0.84
VIPAS39-210ENST00000557466 EMILIN1Q9Y6C2 1016 aa20.27■□□□□ 0.84
VIPAS39-210ENST00000557466 KIF24Q5T7B8 1368 aa20.26■□□□□ 0.83
VIPAS39-210ENST00000557466 HOXC9P31274 260 aa20.26■□□□□ 0.83
VIPAS39-210ENST00000557466 AMPHP49418 695 aa20.26■□□□□ 0.83
VIPAS39-210ENST00000557466 EVA1CP58658 441 aa20.26■□□□□ 0.83
VIPAS39-210ENST00000557466 RBM6P78332 1123 aaKnown RBP20.26■□□□□ 0.83
VIPAS39-210ENST00000557466 CNGB1Q14028 1251 aaPredicted RBP20.26■□□□□ 0.83
VIPAS39-210ENST00000557466 LARP1Q6PKG0 1096 aaKnown RBP20.26■□□□□ 0.83
VIPAS39-210ENST00000557466 IP6K1Q92551 441 aa20.26■□□□□ 0.83
VIPAS39-210ENST00000557466 GJD4Q96KN9 370 aaPredicted RBP20.26■□□□□ 0.83
VIPAS39-210ENST00000557466 CCDC9Q9Y3X0 531 aaKnown RBP20.26■□□□□ 0.83
VIPAS39-210ENST00000557466 CRB1P82279 1406 aa20.26■□□□□ 0.83
VIPAS39-210ENST00000557466 CDK12Q9NYV4 1490 aaPredicted RBP20.25■□□□□ 0.83
VIPAS39-210ENST00000557466 FLT4P35916 1363 aa20.25■□□□□ 0.83
VIPAS39-210ENST00000557466 RXRBP28702 533 aa20.25■□□□□ 0.83
VIPAS39-210ENST00000557466 RGS12O14924 1447 aa20.25■□□□□ 0.83
VIPAS39-210ENST00000557466 ERBB3P21860 1342 aa20.25■□□□□ 0.83
VIPAS39-210ENST00000557466 SPATA31A5Q5VU36 1347 aa20.25■□□□□ 0.83
VIPAS39-210ENST00000557466 SPATA31A7Q8IWB4 1347 aa20.25■□□□□ 0.83
VIPAS39-210ENST00000557466 WDR17Q8IZU2 1322 aa20.25■□□□□ 0.83
VIPAS39-210ENST00000557466 THSD7AQ9UPZ6 1657 aa20.24■□□□□ 0.83
VIPAS39-210ENST00000557466 POLKQ9UBT6 870 aa20.24■□□□□ 0.83
VIPAS39-210ENST00000557466 SPATA31A1Q5TZJ5 1347 aa20.23■□□□□ 0.83
VIPAS39-210ENST00000557466 BRWD3Q6RI45 1802 aa20.23■□□□□ 0.83
VIPAS39-210ENST00000557466 ANKRD24Q8TF21 1146 aa20.22■□□□□ 0.83
VIPAS39-210ENST00000557466 INSRP06213 1382 aa20.21■□□□□ 0.83
VIPAS39-210ENST00000557466 CSB-PGBD3P0DP91 1061 aa20.21■□□□□ 0.83
VIPAS39-210ENST00000557466 PPM1GO15355 546 aaPredicted RBP20.2■□□□□ 0.82
VIPAS39-210ENST00000557466 HSP90AB2PQ58FF8 381 aa20.2■□□□□ 0.82
VIPAS39-210ENST00000557466 TOM1L2Q6ZVM7 507 aa20.2■□□□□ 0.82
VIPAS39-210ENST00000557466 LTV1Q96GA3 475 aaPredicted RBP20.2■□□□□ 0.82
VIPAS39-210ENST00000557466 USP35Q9P2H5 1018 aa20.19■□□□□ 0.82
VIPAS39-210ENST00000557466 PARP4Q9UKK3 1724 aaKnown RBP20.19■□□□□ 0.82
VIPAS39-210ENST00000557466 LRRC37A3O60309 1634 aa20.17■□□□□ 0.82
VIPAS39-210ENST00000557466 FAM98CQ17RN3 349 aaKnown RBP20.17■□□□□ 0.82
VIPAS39-210ENST00000557466 PARD3Q8TEW0 1356 aa20.17■□□□□ 0.82
VIPAS39-210ENST00000557466 TCP11L2Q8N4U5 519 aa20.16■□□□□ 0.82
VIPAS39-210ENST00000557466 CARD10Q9BWT7 1032 aa20.16■□□□□ 0.82
VIPAS39-210ENST00000557466 NLRP2Q9NX02 1062 aa20.15■□□□□ 0.82
VIPAS39-210ENST00000557466 RGPD1P0DJD0 1748 aa20.14■□□□□ 0.81
VIPAS39-210ENST00000557466 DISP2A7MBM2 1401 aa20.14■□□□□ 0.81
VIPAS39-210ENST00000557466 BARGINQ6ZT62 677 aa20.14■□□□□ 0.81
VIPAS39-210ENST00000557466 THRAP3Q9Y2W1 955 aaKnown RBP20.14■□□□□ 0.81
VIPAS39-210ENST00000557466 COL3A1P02461 1466 aaPredicted RBP20.13■□□□□ 0.81
VIPAS39-210ENST00000557466 ONECUT3O60422 494 aaPredicted RBP20.13■□□□□ 0.81
VIPAS39-210ENST00000557466 MTHFSP49914 203 aa20.13■□□□□ 0.81
VIPAS39-210ENST00000557466 SEPT12Q8IYM1 358 aa20.12■□□□□ 0.81
VIPAS39-210ENST00000557466 A0A0G2JS52 829 aa20.11■□□□□ 0.81
VIPAS39-210ENST00000557466 PPP2R1AP30153 589 aa20.11■□□□□ 0.81
VIPAS39-210ENST00000557466 MYT1Q01538 1121 aa20.11■□□□□ 0.81
VIPAS39-210ENST00000557466 EIF4A2Q14240 407 aaKnown RBP20.11■□□□□ 0.81
VIPAS39-210ENST00000557466 NCAPD2Q15021 1401 aa20.1■□□□□ 0.81
VIPAS39-210ENST00000557466 NBPF6Q5VWK0 638 aa20.1■□□□□ 0.81
VIPAS39-210ENST00000557466 NBPF4Q96M43 638 aa20.1■□□□□ 0.81
VIPAS39-210ENST00000557466 USHBP1Q8N6Y0 703 aa20.09■□□□□ 0.81
VIPAS39-210ENST00000557466 SHANK3Q9BYB0 1731 aa20.09■□□□□ 0.81
VIPAS39-210ENST00000557466 MEGF6O75095 1541 aa20.08■□□□□ 0.81
VIPAS39-210ENST00000557466 RALBP1Q15311 655 aa20.06■□□□□ 0.8
VIPAS39-210ENST00000557466 TNS2Q63HR2 1409 aa20.06■□□□□ 0.8
VIPAS39-210ENST00000557466 EYA1Q99502 592 aa20.06■□□□□ 0.8
VIPAS39-210ENST00000557466 PKD1L3Q7Z443 1732 aa20.05■□□□□ 0.8
VIPAS39-210ENST00000557466 IGSF1Q8N6C5 1336 aa20.04■□□□□ 0.8
VIPAS39-210ENST00000557466 IL2RBP14784 551 aa20.04■□□□□ 0.8
VIPAS39-210ENST00000557466 IL13P35225 146 aa20.04■□□□□ 0.8
VIPAS39-210ENST00000557466 CDCA7Q9BWT1 371 aaPredicted RBP20.04■□□□□ 0.8
VIPAS39-210ENST00000557466 PRKRIP1Q9H875 184 aaPredicted RBP20.03■□□□□ 0.8
VIPAS39-210ENST00000557466 OVOS2A0A0G2JMS6 1433 aa20.02■□□□□ 0.8
VIPAS39-210ENST00000557466 KRT27Q7Z3Y8 459 aa20.02■□□□□ 0.8
VIPAS39-210ENST00000557466 MYBBP1AQ9BQG0 1328 aaKnown RBP20.02■□□□□ 0.79
VIPAS39-210ENST00000557466 DIAPH1O60610 1272 aaKnown RBP20.01■□□□□ 0.79
VIPAS39-210ENST00000557466 DDB1Q16531 1140 aa20.01■□□□□ 0.79
VIPAS39-210ENST00000557466 CFAP53Q96M91 514 aa20.01■□□□□ 0.79
VIPAS39-210ENST00000557466 KDRP35968 1356 aa19.98■□□□□ 0.79
VIPAS39-210ENST00000557466 SBF2Q86WG5 1849 aa19.98■□□□□ 0.79
VIPAS39-210ENST00000557466 PDE3BQ13370 1112 aa19.98■□□□□ 0.79
VIPAS39-210ENST00000557466 FAM182BQ5T319 152 aa19.98■□□□□ 0.79
VIPAS39-210ENST00000557466 AEBP1Q8IUX7 1158 aa19.98■□□□□ 0.79
VIPAS39-210ENST00000557466 RAPGEF4Q8WZA2 1011 aa19.98■□□□□ 0.79
VIPAS39-210ENST00000557466 TATP17735 454 aaPredicted RBP19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms