RNA–Protein interactions for RNA: ENST00000557285.1

VSX1-207, Transcript of visual system homeobox 1, humanhuman

TSL 3

Gene VSX1, Length 558 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1-207ENST00000557285 NINLQ9Y2I6 1382 aa23.15■■□□□ 1.3
VSX1-207ENST00000557285 TOM1L2Q6ZVM7 507 aa23.15■■□□□ 1.3
VSX1-207ENST00000557285 DEFB132Q7Z7B7 95 aa23.15■■□□□ 1.3
VSX1-207ENST00000557285 CRB1P82279 1406 aa23.15■■□□□ 1.3
VSX1-207ENST00000557285 CSB-PGBD3P0DP91 1061 aa23.14■■□□□ 1.29
VSX1-207ENST00000557285 USP31Q70CQ4 1352 aa23.14■■□□□ 1.29
VSX1-207ENST00000557285 BARGINQ6ZT62 677 aa23.13■■□□□ 1.29
VSX1-207ENST00000557285 LTN1O94822 1766 aa23.13■■□□□ 1.29
VSX1-207ENST00000557285 USP54Q70EL1 1684 aa23.13■■□□□ 1.29
VSX1-207ENST00000557285 PDE3BQ13370 1112 aa23.11■■□□□ 1.29
VSX1-207ENST00000557285 POLR3GLQ9BT43 218 aa23.1■■□□□ 1.29
VSX1-207ENST00000557285 THRAP3Q9Y2W1 955 aaKnown RBP23.1■■□□□ 1.29
VSX1-207ENST00000557285 ANKRD36BQ8N2N9 1353 aa23.1■■□□□ 1.29
VSX1-207ENST00000557285 WDR17Q8IZU2 1322 aa23.09■■□□□ 1.29
VSX1-207ENST00000557285 CDCA8Q53HL2 280 aa23.09■■□□□ 1.29
VSX1-207ENST00000557285 OVOS2A0A0J9YW53 1432 aa23.08■■□□□ 1.29
VSX1-207ENST00000557285 OVOS2Q6IE36 1432 aa23.08■■□□□ 1.29
VSX1-207ENST00000557285 RGPD1P0DJD0 1748 aa23.08■■□□□ 1.28
VSX1-207ENST00000557285 PARP4Q9UKK3 1724 aaKnown RBP23.06■■□□□ 1.28
VSX1-207ENST00000557285 COG3Q96JB2 828 aa23.06■■□□□ 1.28
VSX1-207ENST00000557285 TRIM37O94972 964 aa23.05■■□□□ 1.28
VSX1-207ENST00000557285 BAG6P46379 1132 aa23.05■■□□□ 1.28
VSX1-207ENST00000557285 FAM196AQ6ZSG2 479 aa23.05■■□□□ 1.28
VSX1-207ENST00000557285 MYOM1P52179 1685 aa23.05■■□□□ 1.28
VSX1-207ENST00000557285 WNK3Q9BYP7 1800 aa23.05■■□□□ 1.28
VSX1-207ENST00000557285 LRRC37A3O60309 1634 aa23.04■■□□□ 1.28
VSX1-207ENST00000557285 TNS1Q9HBL0 1735 aaKnown RBP23.03■■□□□ 1.28
VSX1-207ENST00000557285 FBLN1P23142 703 aa23.03■■□□□ 1.28
VSX1-207ENST00000557285 GGNBP2Q9H3C7 697 aa23.03■■□□□ 1.28
VSX1-207ENST00000557285 ABCC6O95255 1503 aa23.03■■□□□ 1.28
VSX1-207ENST00000557285 HSPA5P11021 654 aaKnown RBP23.02■■□□□ 1.28
VSX1-207ENST00000557285 CARD10Q9BWT7 1032 aa23.02■■□□□ 1.28
VSX1-207ENST00000557285 KIF20BQ96Q89 1820 aa23.01■■□□□ 1.27
VSX1-207ENST00000557285 EIF4G2P78344 907 aaKnown RBP eCLIP23.01■■□□□ 1.27
VSX1-207ENST00000557285 EN1Q05925 392 aaPredicted RBP23.01■■□□□ 1.27
VSX1-207ENST00000557285 DDB1Q16531 1140 aa23.01■■□□□ 1.27
VSX1-207ENST00000557285 ANKRD24Q8TF21 1146 aa23.01■■□□□ 1.27
VSX1-207ENST00000557285 LTV1Q96GA3 475 aaPredicted RBP23.01■■□□□ 1.27
VSX1-207ENST00000557285 NLRP2Q9NX02 1062 aa23.01■■□□□ 1.27
VSX1-207ENST00000557285 ERBB3P21860 1342 aa22.99■■□□□ 1.27
VSX1-207ENST00000557285 FYB1O15117 783 aa22.98■■□□□ 1.27
VSX1-207ENST00000557285 NSD3Q9BZ95 1437 aa22.98■■□□□ 1.27
VSX1-207ENST00000557285 MAP3K19Q56UN5 1328 aa22.97■■□□□ 1.27
VSX1-207ENST00000557285 APBA3O96018 575 aa22.96■■□□□ 1.27
VSX1-207ENST00000557285 AMPHP49418 695 aa22.96■■□□□ 1.27
VSX1-207ENST00000557285 CARD14Q9BXL6 1004 aa22.96■■□□□ 1.27
VSX1-207ENST00000557285 CCDC7Q96M83 1385 aa22.96■■□□□ 1.27
VSX1-207ENST00000557285 OVOS2A0A0G2JMS6 1433 aa22.95■■□□□ 1.26
VSX1-207ENST00000557285 RRS1Q15050 365 aaKnown RBP22.95■■□□□ 1.26
VSX1-207ENST00000557285 IP6K1Q92551 441 aa22.95■■□□□ 1.26
VSX1-207ENST00000557285 CDCA7Q9BWT1 371 aaPredicted RBP22.95■■□□□ 1.26
VSX1-207ENST00000557285 EZH2Q15910 746 aaKnown RBP22.94■■□□□ 1.26
VSX1-207ENST00000557285 DISP2A7MBM2 1401 aa22.93■■□□□ 1.26
VSX1-207ENST00000557285 PEAK1Q9H792 1746 aa22.93■■□□□ 1.26
VSX1-207ENST00000557285 HOXC9P31274 260 aa22.92■■□□□ 1.26
VSX1-207ENST00000557285 MARCH10Q8NA82 808 aaPredicted RBP22.92■■□□□ 1.26
VSX1-207ENST00000557285 PSDA5PKW4 1024 aaPredicted RBP22.91■■□□□ 1.26
VSX1-207ENST00000557285 EXOC5O00471 708 aa22.91■■□□□ 1.26
VSX1-207ENST00000557285 SRCAPQ6ZRS2 3230 aa22.9■■□□□ 1.26
VSX1-207ENST00000557285 SBF2Q86WG5 1849 aa22.9■■□□□ 1.26
VSX1-207ENST00000557285 RGPD2P0DJD1 1756 aa22.89■■□□□ 1.26
VSX1-207ENST00000557285 FAM208AQ9UK61 1670 aaKnown RBP22.88■■□□□ 1.25
VSX1-207ENST00000557285 IL2RBP14784 551 aa22.88■■□□□ 1.25
VSX1-207ENST00000557285 TNS2Q63HR2 1409 aa22.88■■□□□ 1.25
VSX1-207ENST00000557285 CAMKK2Q96RR4 588 aa22.87■■□□□ 1.25
VSX1-207ENST00000557285 PTF1AQ7RTS3 328 aa22.86■■□□□ 1.25
VSX1-207ENST00000557285 C11orf95C9JLR9 678 aaPredicted RBP22.85■■□□□ 1.25
VSX1-207ENST00000557285 RTL1A6NKG5 1358 aa22.85■■□□□ 1.25
VSX1-207ENST00000557285 CGNL1Q0VF96 1302 aa22.84■■□□□ 1.25
VSX1-207ENST00000557285 PPM1GO15355 546 aaPredicted RBP22.84■■□□□ 1.25
VSX1-207ENST00000557285 R3HDM1Q15032 1099 aaKnown RBP22.83■■□□□ 1.25
VSX1-207ENST00000557285 PANK3Q9H999 370 aa22.83■■□□□ 1.25
VSX1-207ENST00000557285 KAT6BQ8WYB5 2073 aa22.82■■□□□ 1.24
VSX1-207ENST00000557285 TNNT2P45379 298 aaPredicted RBP22.82■■□□□ 1.24
VSX1-207ENST00000557285 USHBP1Q8N6Y0 703 aa22.82■■□□□ 1.24
VSX1-207ENST00000557285 EMILIN1Q9Y6C2 1016 aa22.82■■□□□ 1.24
VSX1-207ENST00000557285 SMG6Q86US8 1419 aaKnown RBP22.82■■□□□ 1.24
VSX1-207ENST00000557285 RREB1Q92766 1687 aa22.81■■□□□ 1.24
VSX1-207ENST00000557285 HSP90AB2PQ58FF8 381 aa22.81■■□□□ 1.24
VSX1-207ENST00000557285 ACSBG1Q96GR2 724 aa22.81■■□□□ 1.24
VSX1-207ENST00000557285 BCL11BQ9C0K0 894 aaPredicted RBP22.81■■□□□ 1.24
VSX1-207ENST00000557285 NUP188Q5SRE5 1749 aa22.81■■□□□ 1.24
VSX1-207ENST00000557285 PARD3Q8TEW0 1356 aa22.8■■□□□ 1.24
VSX1-207ENST00000557285 DDX54Q8TDD1 881 aaKnown RBP22.8■■□□□ 1.24
VSX1-207ENST00000557285 FLT4P35916 1363 aa22.79■■□□□ 1.24
VSX1-207ENST00000557285 KCNQ2O43526 872 aa22.78■■□□□ 1.24
VSX1-207ENST00000557285 NBPF6Q5VWK0 638 aa22.78■■□□□ 1.24
VSX1-207ENST00000557285 NBPF4Q96M43 638 aa22.78■■□□□ 1.24
VSX1-207ENST00000557285 MAP2P11137 1827 aaKnown RBP22.78■■□□□ 1.24
VSX1-207ENST00000557285 ANKRD26Q9UPS8 1709 aa22.77■■□□□ 1.24
VSX1-207ENST00000557285 INSRP06213 1382 aa22.76■■□□□ 1.23
VSX1-207ENST00000557285 BCL9O00512 1426 aa22.76■■□□□ 1.23
VSX1-207ENST00000557285 MEGF6O75095 1541 aa22.76■■□□□ 1.23
VSX1-207ENST00000557285 NHSQ6T4R5 1651 aa22.74■■□□□ 1.23
VSX1-207ENST00000557285 KIF7Q2M1P5 1343 aa22.74■■□□□ 1.23
VSX1-207ENST00000557285 NBPF14Q5TI25 921 aa22.73■■□□□ 1.23
VSX1-207ENST00000557285 RGPD3A6NKT7 1758 aaPredicted RBP22.72■■□□□ 1.23
VSX1-207ENST00000557285 RGPD4Q7Z3J3 1758 aa22.72■■□□□ 1.23
VSX1-207ENST00000557285 PLSCR1O15162 318 aa22.72■■□□□ 1.23
VSX1-207ENST00000557285 RAPGEF4Q8WZA2 1011 aa22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms