RNA–Protein interactions for RNA: ENST00000557275.5

SYNE3-205, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene SYNE3, Length 13,488 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-205ENST00000557275 CLUAP1Q96AJ1 413 aa10.35□□□□□ -0.75
SYNE3-205ENST00000557275 TTC14Q96N46 770 aa10.35□□□□□ -0.75
SYNE3-205ENST00000557275 NOL7Q9UMY1 257 aaKnown RBP10.35□□□□□ -0.75
SYNE3-205ENST00000557275 CCDC150Q8NCX0 1101 aa10.34□□□□□ -0.75
SYNE3-205ENST00000557275 MCM5P33992 734 aa10.34□□□□□ -0.75
SYNE3-205ENST00000557275 STK38Q15208 465 aa10.34□□□□□ -0.75
SYNE3-205ENST00000557275 WASF1Q92558 559 aa10.34□□□□□ -0.75
SYNE3-205ENST00000557275 CNGA1P29973 690 aa10.34□□□□□ -0.75
SYNE3-205ENST00000557275 FSD2A1L4K1 749 aa10.34□□□□□ -0.75
SYNE3-205ENST00000557275 CIZ1Q9ULV3 898 aaPredicted RBP10.34□□□□□ -0.75
SYNE3-205ENST00000557275 CCDC110Q8TBZ0 833 aa10.34□□□□□ -0.75
SYNE3-205ENST00000557275 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.34□□□□□ -0.75
SYNE3-205ENST00000557275 SKIDA1Q1XH10 827 aa10.34□□□□□ -0.75
SYNE3-205ENST00000557275 PLEKHH1Q9ULM0 1364 aa10.34□□□□□ -0.75
SYNE3-205ENST00000557275 KIF20AO95235 890 aa10.34□□□□□ -0.75
SYNE3-205ENST00000557275 HOMER2Q9NSB8 354 aa10.34□□□□□ -0.75
SYNE3-205ENST00000557275 NFKBIBQ15653 356 aa10.33□□□□□ -0.76
SYNE3-205ENST00000557275 ALS2CR12Q96Q35 445 aa10.33□□□□□ -0.76
SYNE3-205ENST00000557275 SFPQP23246 707 aaKnown RBP eCLIP10.33□□□□□ -0.76
SYNE3-205ENST00000557275 TTC12Q9H892 705 aaPredicted RBP10.33□□□□□ -0.76
SYNE3-205ENST00000557275 GSTTP1A0A1W2PQM5 241 aa10.33□□□□□ -0.76
SYNE3-205ENST00000557275 PRKCSHP14314 528 aaPredicted RBP10.33□□□□□ -0.76
SYNE3-205ENST00000557275 CEP83Q9Y592 693 aa10.33□□□□□ -0.76
SYNE3-205ENST00000557275 RAB3IL1Q8TBN0 382 aa10.33□□□□□ -0.76
SYNE3-205ENST00000557275 TICAM2Q86XR7 235 aa10.32□□□□□ -0.76
SYNE3-205ENST00000557275 GNL3LQ9NVN8 582 aaKnown RBP10.32□□□□□ -0.76
SYNE3-205ENST00000557275 CLGNO14967 610 aa10.32□□□□□ -0.76
SYNE3-205ENST00000557275 AIMP1Q12904 312 aaKnown RBP10.32□□□□□ -0.76
SYNE3-205ENST00000557275 SOGA3Q5TF21 947 aa10.32□□□□□ -0.76
SYNE3-205ENST00000557275 CEP112Q8N8E3 955 aa10.32□□□□□ -0.76
SYNE3-205ENST00000557275 NGDNQ8NEJ9 315 aaKnown RBP10.32□□□□□ -0.76
SYNE3-205ENST00000557275 CCDC158Q5M9N0 1113 aa10.32□□□□□ -0.76
SYNE3-205ENST00000557275 SMARCA2P51531 1590 aa10.32□□□□□ -0.76
SYNE3-205ENST00000557275 SH2D4BQ5SQS7 431 aa10.32□□□□□ -0.76
SYNE3-205ENST00000557275 ANAPC4Q9UJX5 808 aa10.32□□□□□ -0.76
SYNE3-205ENST00000557275 IKBKGQ9Y6K9 419 aa10.32□□□□□ -0.76
SYNE3-205ENST00000557275 EVC2Q86UK5 1308 aa10.32□□□□□ -0.76
SYNE3-205ENST00000557275 SLU7O95391 586 aaKnown RBP10.32□□□□□ -0.76
SYNE3-205ENST00000557275 MNAT1P51948 309 aa10.32□□□□□ -0.76
SYNE3-205ENST00000557275 SSX2IPQ9Y2D8 614 aa10.32□□□□□ -0.76
SYNE3-205ENST00000557275 VPS8Q8N3P4 1428 aa10.32□□□□□ -0.76
SYNE3-205ENST00000557275 MLECQ14165 292 aa10.32□□□□□ -0.76
SYNE3-205ENST00000557275 COG3Q96JB2 828 aa10.31□□□□□ -0.76
SYNE3-205ENST00000557275 CCDC144AA2RUR9 1427 aa10.31□□□□□ -0.76
SYNE3-205ENST00000557275 MAP4K4O95819 1239 aaPredicted RBP10.31□□□□□ -0.76
SYNE3-205ENST00000557275 USO1O60763 962 aaKnown RBP10.31□□□□□ -0.76
SYNE3-205ENST00000557275 EIF4G1Q04637 1599 aaKnown RBP10.31□□□□□ -0.76
SYNE3-205ENST00000557275 NACAP1Q9BZK3 213 aa10.31□□□□□ -0.76
SYNE3-205ENST00000557275 BRPF1P55201 1214 aaPredicted RBP10.31□□□□□ -0.76
SYNE3-205ENST00000557275 IFI16Q16666 785 aaKnown RBP10.31□□□□□ -0.76
SYNE3-205ENST00000557275 PAFAH1B1P43034 410 aa10.31□□□□□ -0.76
SYNE3-205ENST00000557275 ZSCAN30Q86W11 494 aa10.31□□□□□ -0.76
SYNE3-205ENST00000557275 GSDMDP57764 484 aa10.31□□□□□ -0.76
SYNE3-205ENST00000557275 CEP135Q66GS9 1140 aa10.31□□□□□ -0.76
SYNE3-205ENST00000557275 IKQ13123 557 aaPredicted RBP10.31□□□□□ -0.76
SYNE3-205ENST00000557275 BCL2L13Q9BXK5 485 aa10.31□□□□□ -0.76
SYNE3-205ENST00000557275 TANGO6Q9C0B7 1094 aa10.31□□□□□ -0.76
SYNE3-205ENST00000557275 STMN1P16949 149 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 TACC1O75410 805 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 KIF4AO95239 1232 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 TUBB4AP04350 444 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 CETN1Q12798 172 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 PHAXQ9H814 394 aaKnown RBP10.3□□□□□ -0.76
SYNE3-205ENST00000557275 FAM193AP78312 1265 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 FBF1Q8TES7 1133 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 A6NNZ2 444 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 TUBB8Q3ZCM7 444 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 ME1P48163 572 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 STAC3Q96MF2 364 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 PYM1Q9BRP8 204 aaKnown RBP10.3□□□□□ -0.76
SYNE3-205ENST00000557275 ESPNB1AK53 854 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 ZBTB17Q13105 803 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 GNAI1P63096 354 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 PTPN14Q15678 1187 aa10.3□□□□□ -0.76
SYNE3-205ENST00000557275 MAP3K9P80192 1104 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 PIBF1Q8WXW3 757 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 SRCIN1Q9C0H9 1055 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 ZNF287Q9HBT7 754 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 RBM28Q9NW13 759 aaKnown RBP10.29□□□□□ -0.76
SYNE3-205ENST00000557275 SMC6Q96SB8 1091 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 SMARCC1Q92922 1105 aaPredicted RBP10.29□□□□□ -0.76
SYNE3-205ENST00000557275 UPF3BQ9BZI7 483 aaKnown RBP10.29□□□□□ -0.76
SYNE3-205ENST00000557275 STIM2Q9P246 746 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 CASQ1P31415 396 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 ERICH4A6NGS2 130 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 FKBP15Q5T1M5 1219 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 CCDC172P0C7W6 258 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 EIF5P55010 431 aaKnown RBP10.29□□□□□ -0.76
SYNE3-205ENST00000557275 TUBBP07437 444 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 KRT32Q14532 448 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 SENP3-EIF4A1A0A087X0R7 540 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 RSRC1Q96IZ7 334 aaKnown RBP10.29□□□□□ -0.76
SYNE3-205ENST00000557275 NUP155O75694 1391 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 PPP4R3AQ6IN85 833 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 CTAGE5O15320 804 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 RAB34Q9BZG1 259 aa10.29□□□□□ -0.76
SYNE3-205ENST00000557275 GNAI3P08754 354 aa10.28□□□□□ -0.76
SYNE3-205ENST00000557275 GTF2A1P52655 376 aaPredicted RBP10.28□□□□□ -0.76
SYNE3-205ENST00000557275 SPECC1Q5M775 1068 aa10.28□□□□□ -0.76
SYNE3-205ENST00000557275 ZSCAN25Q6NSZ9 544 aa10.28□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms