RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 NSD2O96028 1365 aa23.97■■□□□ 1.43
SHMT2-225ENST00000556798 STRN4Q9NRL3 753 aa23.97■■□□□ 1.43
SHMT2-225ENST00000556798 AMER1Q5JTC6 1135 aaPredicted RBP23.96■■□□□ 1.43
SHMT2-225ENST00000556798 RRS1Q15050 365 aaKnown RBP23.95■■□□□ 1.42
SHMT2-225ENST00000556798 AXIN2Q9Y2T1 843 aa23.95■■□□□ 1.42
SHMT2-225ENST00000556798 MAP3K19Q56UN5 1328 aa23.94■■□□□ 1.42
SHMT2-225ENST00000556798 CCDC9Q9Y3X0 531 aaKnown RBP23.94■■□□□ 1.42
SHMT2-225ENST00000556798 TNNT2P45379 298 aaPredicted RBP23.93■■□□□ 1.42
SHMT2-225ENST00000556798 VPS72Q15906 364 aa23.93■■□□□ 1.42
SHMT2-225ENST00000556798 ILDR2Q71H61 639 aa23.93■■□□□ 1.42
SHMT2-225ENST00000556798 RXRBP28702 533 aa23.92■■□□□ 1.42
SHMT2-225ENST00000556798 EVA1CP58658 441 aa23.92■■□□□ 1.42
SHMT2-225ENST00000556798 CNGB1Q14028 1251 aaPredicted RBP23.92■■□□□ 1.42
SHMT2-225ENST00000556798 RGPD2P0DJD1 1756 aa23.91■■□□□ 1.42
SHMT2-225ENST00000556798 RBM6P78332 1123 aaKnown RBP23.91■■□□□ 1.42
SHMT2-225ENST00000556798 CC2D1BQ5T0F9 858 aaKnown RBP23.91■■□□□ 1.42
SHMT2-225ENST00000556798 GJD4Q96KN9 370 aaPredicted RBP23.91■■□□□ 1.42
SHMT2-225ENST00000556798 LARP1Q6PKG0 1096 aaKnown RBP23.9■■□□□ 1.42
SHMT2-225ENST00000556798 MORC1Q86VD1 984 aa23.9■■□□□ 1.42
SHMT2-225ENST00000556798 AMPHP49418 695 aa23.89■■□□□ 1.41
SHMT2-225ENST00000556798 WNK3Q9BYP7 1800 aa23.89■■□□□ 1.41
SHMT2-225ENST00000556798 RGS12O14924 1447 aa23.88■■□□□ 1.41
SHMT2-225ENST00000556798 BLMP54132 1417 aaPredicted RBP23.88■■□□□ 1.41
SHMT2-225ENST00000556798 DDX10Q13206 875 aaKnown RBP23.88■■□□□ 1.41
SHMT2-225ENST00000556798 EMILIN1Q9Y6C2 1016 aa23.88■■□□□ 1.41
SHMT2-225ENST00000556798 FAM208AQ9UK61 1670 aaKnown RBP23.88■■□□□ 1.41
SHMT2-225ENST00000556798 RTL1A6NKG5 1358 aa23.88■■□□□ 1.41
SHMT2-225ENST00000556798 SPATA31A5Q5VU36 1347 aa23.87■■□□□ 1.41
SHMT2-225ENST00000556798 SPATA31A7Q8IWB4 1347 aa23.87■■□□□ 1.41
SHMT2-225ENST00000556798 BRWD3Q6RI45 1802 aa23.87■■□□□ 1.41
SHMT2-225ENST00000556798 HOXC9P31274 260 aa23.87■■□□□ 1.41
SHMT2-225ENST00000556798 IP6K1Q92551 441 aa23.87■■□□□ 1.41
SHMT2-225ENST00000556798 USP35Q9P2H5 1018 aa23.86■■□□□ 1.41
SHMT2-225ENST00000556798 NPC1L1Q9UHC9 1359 aa23.86■■□□□ 1.41
SHMT2-225ENST00000556798 WDR17Q8IZU2 1322 aa23.85■■□□□ 1.41
SHMT2-225ENST00000556798 CRB1P82279 1406 aa23.85■■□□□ 1.41
SHMT2-225ENST00000556798 ZNF316A6NFI3 1004 aaPredicted RBP23.85■■□□□ 1.41
SHMT2-225ENST00000556798 CSB-PGBD3P0DP91 1061 aa23.85■■□□□ 1.41
SHMT2-225ENST00000556798 CDK12Q9NYV4 1490 aaPredicted RBP23.85■■□□□ 1.41
SHMT2-225ENST00000556798 ERBB3P21860 1342 aa23.84■■□□□ 1.41
SHMT2-225ENST00000556798 SPATA31A1Q5TZJ5 1347 aa23.84■■□□□ 1.41
SHMT2-225ENST00000556798 FLT4P35916 1363 aa23.84■■□□□ 1.41
SHMT2-225ENST00000556798 PPM1GO15355 546 aaPredicted RBP23.84■■□□□ 1.41
SHMT2-225ENST00000556798 LTV1Q96GA3 475 aaPredicted RBP23.84■■□□□ 1.41
SHMT2-225ENST00000556798 TOM1L2Q6ZVM7 507 aa23.83■■□□□ 1.41
SHMT2-225ENST00000556798 ANKRD24Q8TF21 1146 aa23.83■■□□□ 1.41
SHMT2-225ENST00000556798 POLKQ9UBT6 870 aa23.83■■□□□ 1.41
SHMT2-225ENST00000556798 THSD7AQ9UPZ6 1657 aa23.83■■□□□ 1.4
SHMT2-225ENST00000556798 KIF24Q5T7B8 1368 aa23.81■■□□□ 1.4
SHMT2-225ENST00000556798 FAM98CQ17RN3 349 aaKnown RBP23.81■■□□□ 1.4
SHMT2-225ENST00000556798 HSP90AB2PQ58FF8 381 aa23.81■■□□□ 1.4
SHMT2-225ENST00000556798 SMG6Q86US8 1419 aaKnown RBP23.81■■□□□ 1.4
SHMT2-225ENST00000556798 INSRP06213 1382 aa23.78■■□□□ 1.4
SHMT2-225ENST00000556798 A0A0G2JS52 829 aa23.78■■□□□ 1.4
SHMT2-225ENST00000556798 MYT1Q01538 1121 aa23.78■■□□□ 1.4
SHMT2-225ENST00000556798 TCP11L2Q8N4U5 519 aa23.78■■□□□ 1.4
SHMT2-225ENST00000556798 PARP4Q9UKK3 1724 aaKnown RBP23.77■■□□□ 1.4
SHMT2-225ENST00000556798 NLRP2Q9NX02 1062 aa23.77■■□□□ 1.4
SHMT2-225ENST00000556798 SEPT12Q8IYM1 358 aa23.76■■□□□ 1.39
SHMT2-225ENST00000556798 CARD10Q9BWT7 1032 aa23.76■■□□□ 1.39
SHMT2-225ENST00000556798 LRRC37A3O60309 1634 aa23.75■■□□□ 1.39
SHMT2-225ENST00000556798 ONECUT3O60422 494 aaPredicted RBP23.74■■□□□ 1.39
SHMT2-225ENST00000556798 BARGINQ6ZT62 677 aa23.73■■□□□ 1.39
SHMT2-225ENST00000556798 THRAP3Q9Y2W1 955 aaKnown RBP23.72■■□□□ 1.39
SHMT2-225ENST00000556798 MTHFSP49914 203 aa23.71■■□□□ 1.39
SHMT2-225ENST00000556798 DISP2A7MBM2 1401 aa23.7■■□□□ 1.38
SHMT2-225ENST00000556798 USHBP1Q8N6Y0 703 aa23.7■■□□□ 1.38
SHMT2-225ENST00000556798 PARD3Q8TEW0 1356 aa23.69■■□□□ 1.38
SHMT2-225ENST00000556798 NBPF6Q5VWK0 638 aa23.69■■□□□ 1.38
SHMT2-225ENST00000556798 NBPF4Q96M43 638 aa23.69■■□□□ 1.38
SHMT2-225ENST00000556798 EIF4A2Q14240 407 aaKnown RBP23.68■■□□□ 1.38
SHMT2-225ENST00000556798 RGPD1P0DJD0 1748 aa23.67■■□□□ 1.38
SHMT2-225ENST00000556798 PPP2R1AP30153 589 aa23.66■■□□□ 1.38
SHMT2-225ENST00000556798 COL3A1P02461 1466 aaPredicted RBP23.65■■□□□ 1.38
SHMT2-225ENST00000556798 SHANK3Q9BYB0 1731 aa23.64■■□□□ 1.38
SHMT2-225ENST00000556798 MEGF6O75095 1541 aa23.64■■□□□ 1.38
SHMT2-225ENST00000556798 KRT27Q7Z3Y8 459 aa23.64■■□□□ 1.37
SHMT2-225ENST00000556798 IL2RBP14784 551 aa23.63■■□□□ 1.37
SHMT2-225ENST00000556798 EYA1Q99502 592 aa23.63■■□□□ 1.37
SHMT2-225ENST00000556798 EP400Q96L91 3159 aa23.62■■□□□ 1.37
SHMT2-225ENST00000556798 NCAPD2Q15021 1401 aa23.62■■□□□ 1.37
SHMT2-225ENST00000556798 CDCA7Q9BWT1 371 aaPredicted RBP23.62■■□□□ 1.37
SHMT2-225ENST00000556798 TNS2Q63HR2 1409 aa23.61■■□□□ 1.37
SHMT2-225ENST00000556798 FAM182BQ5T319 152 aa23.61■■□□□ 1.37
SHMT2-225ENST00000556798 DDB1Q16531 1140 aa23.6■■□□□ 1.37
SHMT2-225ENST00000556798 IL13P35225 146 aa23.59■■□□□ 1.37
SHMT2-225ENST00000556798 PDE3BQ13370 1112 aa23.59■■□□□ 1.37
SHMT2-225ENST00000556798 RALBP1Q15311 655 aa23.59■■□□□ 1.37
SHMT2-225ENST00000556798 PKD1L3Q7Z443 1732 aa23.59■■□□□ 1.37
SHMT2-225ENST00000556798 IGSF1Q8N6C5 1336 aa23.59■■□□□ 1.37
SHMT2-225ENST00000556798 OVOS2A0A0G2JMS6 1433 aa23.58■■□□□ 1.36
SHMT2-225ENST00000556798 DIAPH1O60610 1272 aaKnown RBP23.57■■□□□ 1.36
SHMT2-225ENST00000556798 SBF2Q86WG5 1849 aa23.56■■□□□ 1.36
SHMT2-225ENST00000556798 RAPGEF4Q8WZA2 1011 aa23.56■■□□□ 1.36
SHMT2-225ENST00000556798 EXOC5O00471 708 aa23.55■■□□□ 1.36
SHMT2-225ENST00000556798 CFAP53Q96M91 514 aa23.55■■□□□ 1.36
SHMT2-225ENST00000556798 SOCS7O14512 581 aa23.54■■□□□ 1.36
SHMT2-225ENST00000556798 AEBP1Q8IUX7 1158 aa23.54■■□□□ 1.36
SHMT2-225ENST00000556798 PRKRIP1Q9H875 184 aaPredicted RBP23.54■■□□□ 1.36
SHMT2-225ENST00000556798 TATP17735 454 aaPredicted RBP23.53■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms