RNA–Protein interactions for RNA: ENST00000556422.5

TMEM260-210, Transcript of transmembrane protein 260, humanhuman

TSL 1 (best)

Gene TMEM260, Length 3,864 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-210ENST00000556422 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.5□□□□□ -1.37
TMEM260-210ENST00000556422 RRP7AQ9Y3A4 280 aaKnown RBP6.5□□□□□ -1.37
TMEM260-210ENST00000556422 ROBO2Q9HCK4 1378 aa6.5□□□□□ -1.37
TMEM260-210ENST00000556422 LRRC7Q96NW7 1537 aa6.5□□□□□ -1.37
TMEM260-210ENST00000556422 ARHGAP23Q9P227 1491 aa6.5□□□□□ -1.37
TMEM260-210ENST00000556422 MSH5O43196 834 aa6.5□□□□□ -1.37
TMEM260-210ENST00000556422 MAPK8IP2Q13387 824 aaPredicted RBP6.5□□□□□ -1.37
TMEM260-210ENST00000556422 ESF1Q9H501 851 aaKnown RBP6.5□□□□□ -1.37
TMEM260-210ENST00000556422 RNF216Q9NWF9 866 aaPredicted RBP6.5□□□□□ -1.37
TMEM260-210ENST00000556422 PPIP5K1Q6PFW1 1433 aa6.5□□□□□ -1.37
TMEM260-210ENST00000556422 FANCIQ9NVI1 1328 aa6.5□□□□□ -1.37
TMEM260-210ENST00000556422 SOX12O15370 315 aa6.5□□□□□ -1.37
TMEM260-210ENST00000556422 LTKP29376 864 aa6.5□□□□□ -1.37
TMEM260-210ENST00000556422 TXNDC2Q86VQ3 553 aa6.5□□□□□ -1.37
TMEM260-210ENST00000556422 PLEKHF1Q96S99 279 aa6.5□□□□□ -1.37
TMEM260-210ENST00000556422 RGPD8O14715 1765 aaPredicted RBP6.5□□□□□ -1.37
TMEM260-210ENST00000556422 NCKAP5LQ9HCH0 1330 aa6.5□□□□□ -1.37
TMEM260-210ENST00000556422 WASLO00401 505 aaPredicted RBP6.5□□□□□ -1.37
TMEM260-210ENST00000556422 RAD21O60216 631 aa6.5□□□□□ -1.37
TMEM260-210ENST00000556422 BCAR3O75815 825 aa6.5□□□□□ -1.37
TMEM260-210ENST00000556422 CEBPAP49715 358 aaPredicted RBP6.5□□□□□ -1.37
TMEM260-210ENST00000556422 PTPRUQ92729 1446 aa6.49□□□□□ -1.37
TMEM260-210ENST00000556422 PLEKHG1Q9ULL1 1385 aa6.49□□□□□ -1.37
TMEM260-210ENST00000556422 CCDC27Q2M243 656 aa6.49□□□□□ -1.37
TMEM260-210ENST00000556422 NALCNQ8IZF0 1738 aa6.49□□□□□ -1.37
TMEM260-210ENST00000556422 DLG5Q8TDM6 1919 aa6.49□□□□□ -1.37
TMEM260-210ENST00000556422 MCCP23508 829 aa6.49□□□□□ -1.37
TMEM260-210ENST00000556422 EDC4Q6P2E9 1401 aaKnown RBP6.49□□□□□ -1.37
TMEM260-210ENST00000556422 CFAP53Q96M91 514 aa6.49□□□□□ -1.37
TMEM260-210ENST00000556422 KDM2BQ8NHM5 1336 aa6.49□□□□□ -1.37
TMEM260-210ENST00000556422 PRR36Q9H6K5 1346 aa6.49□□□□□ -1.37
TMEM260-210ENST00000556422 FBLN1P23142 703 aa6.49□□□□□ -1.37
TMEM260-210ENST00000556422 NEUROD2Q15784 382 aa6.49□□□□□ -1.37
TMEM260-210ENST00000556422 HDGFL2Q7Z4V5 671 aaPredicted RBP6.49□□□□□ -1.37
TMEM260-210ENST00000556422 SIRT1Q96EB6 747 aa6.49□□□□□ -1.37
TMEM260-210ENST00000556422 IRX3P78415 501 aaPredicted RBP6.48□□□□□ -1.37
TMEM260-210ENST00000556422 XRN1Q8IZH2 1706 aaKnown RBP6.48□□□□□ -1.37
TMEM260-210ENST00000556422 U2AF1L5P0DN76 240 aaPredicted RBP6.48□□□□□ -1.37
TMEM260-210ENST00000556422 U2AF1Q01081 240 aaKnown RBP eCLIP6.48□□□□□ -1.37
TMEM260-210ENST00000556422 CHRM1P11229 460 aaPredicted RBP6.48□□□□□ -1.37
TMEM260-210ENST00000556422 SKAP1Q86WV1 359 aa6.48□□□□□ -1.37
TMEM260-210ENST00000556422 HDAC5Q9UQL6 1122 aa6.48□□□□□ -1.37
TMEM260-210ENST00000556422 WDR63Q8IWG1 891 aa6.47□□□□□ -1.37
TMEM260-210ENST00000556422 SUGP2Q8IX01 1082 aaKnown RBP eCLIP6.47□□□□□ -1.37
TMEM260-210ENST00000556422 RIMS1Q86UR5 1692 aaKnown RBP6.47□□□□□ -1.37
TMEM260-210ENST00000556422 SETQ01105 290 aaPredicted RBP6.47□□□□□ -1.37
TMEM260-210ENST00000556422 POLKQ9UBT6 870 aa6.47□□□□□ -1.37
TMEM260-210ENST00000556422 CDK12Q9NYV4 1490 aaPredicted RBP6.47□□□□□ -1.37
TMEM260-210ENST00000556422 NUDT16Q96DE0 195 aaKnown RBP6.47□□□□□ -1.37
TMEM260-210ENST00000556422 TRIM35Q9UPQ4 493 aa6.47□□□□□ -1.37
TMEM260-210ENST00000556422 KDM4FA0A1W2PPD8 638 aa6.46□□□□□ -1.37
TMEM260-210ENST00000556422 NME9Q86XW9 330 aa6.46□□□□□ -1.37
TMEM260-210ENST00000556422 NECTIN2Q92692 538 aa6.46□□□□□ -1.37
TMEM260-210ENST00000556422 ZNF692Q9BU19 519 aaPredicted RBP6.46□□□□□ -1.37
TMEM260-210ENST00000556422 ZRANB1Q9UGI0 708 aa6.46□□□□□ -1.37
TMEM260-210ENST00000556422 PEAK1Q9H792 1746 aa6.46□□□□□ -1.38
TMEM260-210ENST00000556422 DIP2AQ14689 1571 aa6.46□□□□□ -1.38
TMEM260-210ENST00000556422 VGLL3A8MV65 326 aa6.46□□□□□ -1.38
TMEM260-210ENST00000556422 KDM4AO75164 1064 aa6.46□□□□□ -1.38
TMEM260-210ENST00000556422 HDGFP51858 240 aaKnown RBP6.46□□□□□ -1.38
TMEM260-210ENST00000556422 ZNF622Q969S3 477 aaKnown RBP eCLIP6.46□□□□□ -1.38
TMEM260-210ENST00000556422 CCDC61Q9Y6R9 512 aa6.46□□□□□ -1.38
TMEM260-210ENST00000556422 MARF1Q9Y4F3 1742 aaKnown RBP6.45□□□□□ -1.38
TMEM260-210ENST00000556422 CEP170BQ9Y4F5 1589 aaPredicted RBP6.45□□□□□ -1.38
TMEM260-210ENST00000556422 PTCH1Q13635 1447 aa6.45□□□□□ -1.38
TMEM260-210ENST00000556422 AATKQ6ZMQ8 1374 aa6.45□□□□□ -1.38
TMEM260-210ENST00000556422 VIRMAQ69YN4 1812 aaKnown RBP6.45□□□□□ -1.38
TMEM260-210ENST00000556422 U2SURPO15042 1029 aaKnown RBP6.45□□□□□ -1.38
TMEM260-210ENST00000556422 TMPOP42166 694 aaKnown RBP6.45□□□□□ -1.38
TMEM260-210ENST00000556422 RARSP54136 660 aaKnown RBP6.45□□□□□ -1.38
TMEM260-210ENST00000556422 FOXD4L5Q5VV16 416 aaPredicted RBP6.45□□□□□ -1.38
TMEM260-210ENST00000556422 FOXD4L4Q8WXT5 416 aaPredicted RBP6.45□□□□□ -1.38
TMEM260-210ENST00000556422 RGPD1P0DJD0 1748 aa6.45□□□□□ -1.38
TMEM260-210ENST00000556422 ZNF142P52746 1687 aaPredicted RBP6.45□□□□□ -1.38
TMEM260-210ENST00000556422 DIAPH1O60610 1272 aaKnown RBP6.45□□□□□ -1.38
TMEM260-210ENST00000556422 GRIPAP1Q4V328 841 aa6.45□□□□□ -1.38
TMEM260-210ENST00000556422 KCTD17Q8N5Z5 321 aa6.45□□□□□ -1.38
TMEM260-210ENST00000556422 ANP32BQ92688 251 aaKnown RBP6.45□□□□□ -1.38
TMEM260-210ENST00000556422 EMILIN1Q9Y6C2 1016 aa6.45□□□□□ -1.38
TMEM260-210ENST00000556422 FMN2Q9NZ56 1722 aa6.45□□□□□ -1.38
TMEM260-210ENST00000556422 GOLGA6L2Q8N9W4 650 aaPredicted RBP6.45□□□□□ -1.38
TMEM260-210ENST00000556422 SLC26A8Q96RN1 970 aa6.45□□□□□ -1.38
TMEM260-210ENST00000556422 OVOS2A0A0J9YW53 1432 aa6.44□□□□□ -1.38
TMEM260-210ENST00000556422 OVOS2Q6IE36 1432 aa6.44□□□□□ -1.38
TMEM260-210ENST00000556422 DNAJC2Q99543 621 aaKnown RBP6.44□□□□□ -1.38
TMEM260-210ENST00000556422 SSH2Q76I76 1423 aa6.44□□□□□ -1.38
TMEM260-210ENST00000556422 TNNQ9UQP3 1299 aa6.44□□□□□ -1.38
TMEM260-210ENST00000556422 CHD2O14647 1828 aaKnown RBP6.44□□□□□ -1.38
TMEM260-210ENST00000556422 TCERG1O14776 1098 aaKnown RBP6.44□□□□□ -1.38
TMEM260-210ENST00000556422 PDE3AQ14432 1141 aa6.44□□□□□ -1.38
TMEM260-210ENST00000556422 TSR2Q969E8 191 aaKnown RBP6.44□□□□□ -1.38
TMEM260-210ENST00000556422 USP6P35125 1406 aa6.44□□□□□ -1.38
TMEM260-210ENST00000556422 PIK3C2AO00443 1686 aa6.43□□□□□ -1.38
TMEM260-210ENST00000556422 RLBP1P12271 317 aa6.43□□□□□ -1.38
TMEM260-210ENST00000556422 IL13P35225 146 aa6.43□□□□□ -1.38
TMEM260-210ENST00000556422 FAM177A1Q8N128 213 aaPredicted RBP6.43□□□□□ -1.38
TMEM260-210ENST00000556422 PANK1Q8TE04 598 aa6.43□□□□□ -1.38
TMEM260-210ENST00000556422 ADAMTSL3P82987 1691 aa6.43□□□□□ -1.38
TMEM260-210ENST00000556422 FCHSD2O94868 740 aa6.43□□□□□ -1.38
TMEM260-210ENST00000556422 SLC4A2P04920 1241 aa6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms