RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 KIF20BQ96Q89 1820 aa28.67■■■□□ 2.18
CCDC88C-210ENST00000555995 SOX12O15370 315 aa28.67■■■□□ 2.18
CCDC88C-210ENST00000555995 HSPA5P11021 654 aaKnown RBP28.67■■■□□ 2.18
CCDC88C-210ENST00000555995 KRT27Q7Z3Y8 459 aa28.67■■■□□ 2.18
CCDC88C-210ENST00000555995 CCDC125Q86Z20 511 aa28.66■■■□□ 2.18
CCDC88C-210ENST00000555995 BARGINQ6ZT62 677 aa28.65■■■□□ 2.18
CCDC88C-210ENST00000555995 COG3Q96JB2 828 aa28.65■■■□□ 2.18
CCDC88C-210ENST00000555995 RGPD5Q99666 1765 aa28.65■■■□□ 2.18
CCDC88C-210ENST00000555995 LARP1Q6PKG0 1096 aaKnown RBP28.64■■■□□ 2.18
CCDC88C-210ENST00000555995 TCP11L2Q8N4U5 519 aa28.64■■■□□ 2.18
CCDC88C-210ENST00000555995 ZRANB1Q9UGI0 708 aa28.64■■■□□ 2.18
CCDC88C-210ENST00000555995 WDR17Q8IZU2 1322 aa28.63■■■□□ 2.17
CCDC88C-210ENST00000555995 USP35Q9P2H5 1018 aa28.61■■■□□ 2.17
CCDC88C-210ENST00000555995 PARP4Q9UKK3 1724 aaKnown RBP28.6■■■□□ 2.17
CCDC88C-210ENST00000555995 WNK3Q9BYP7 1800 aa28.59■■■□□ 2.17
CCDC88C-210ENST00000555995 TOM1L2Q6ZVM7 507 aa28.59■■■□□ 2.17
CCDC88C-210ENST00000555995 BLMP54132 1417 aaPredicted RBP28.59■■■□□ 2.17
CCDC88C-210ENST00000555995 AXIN2Q9Y2T1 843 aa28.57■■■□□ 2.16
CCDC88C-210ENST00000555995 NSD3Q9BZ95 1437 aa28.57■■■□□ 2.16
CCDC88C-210ENST00000555995 CSB-PGBD3P0DP91 1061 aa28.56■■■□□ 2.16
CCDC88C-210ENST00000555995 FAM208AQ9UK61 1670 aaKnown RBP28.56■■■□□ 2.16
CCDC88C-210ENST00000555995 POLR3GLQ9BT43 218 aa28.55■■■□□ 2.16
CCDC88C-210ENST00000555995 CCDC7Q96M83 1385 aa28.54■■■□□ 2.16
CCDC88C-210ENST00000555995 FYB1O15117 783 aa28.54■■■□□ 2.16
CCDC88C-210ENST00000555995 CDCA7Q9BWT1 371 aaPredicted RBP28.54■■■□□ 2.16
CCDC88C-210ENST00000555995 EP400Q96L91 3159 aa28.54■■■□□ 2.16
CCDC88C-210ENST00000555995 RGPD1P0DJD0 1748 aa28.53■■■□□ 2.16
CCDC88C-210ENST00000555995 SF3B2Q13435 895 aaKnown RBP28.53■■■□□ 2.16
CCDC88C-210ENST00000555995 RTL1A6NKG5 1358 aa28.52■■■□□ 2.16
CCDC88C-210ENST00000555995 ERBB3P21860 1342 aa28.52■■■□□ 2.16
CCDC88C-210ENST00000555995 CARD10Q9BWT7 1032 aa28.52■■■□□ 2.16
CCDC88C-210ENST00000555995 PDE3BQ13370 1112 aa28.51■■■□□ 2.15
CCDC88C-210ENST00000555995 CGNL1Q0VF96 1302 aa28.5■■■□□ 2.15
CCDC88C-210ENST00000555995 C11orf95C9JLR9 678 aaPredicted RBP28.5■■■□□ 2.15
CCDC88C-210ENST00000555995 GGNBP2Q9H3C7 697 aa28.5■■■□□ 2.15
CCDC88C-210ENST00000555995 LRRC37A3O60309 1634 aa28.49■■■□□ 2.15
CCDC88C-210ENST00000555995 IP6K1Q92551 441 aa28.48■■■□□ 2.15
CCDC88C-210ENST00000555995 CARD14Q9BXL6 1004 aa28.48■■■□□ 2.15
CCDC88C-210ENST00000555995 ANKRD26Q9UPS8 1709 aa28.48■■■□□ 2.15
CCDC88C-210ENST00000555995 AMPHP49418 695 aa28.46■■■□□ 2.15
CCDC88C-210ENST00000555995 FAM196AQ6ZSG2 479 aa28.46■■■□□ 2.15
CCDC88C-210ENST00000555995 KIF24Q5T7B8 1368 aa28.46■■■□□ 2.15
CCDC88C-210ENST00000555995 MAP3K19Q56UN5 1328 aa28.45■■■□□ 2.15
CCDC88C-210ENST00000555995 ANKRD24Q8TF21 1146 aa28.45■■■□□ 2.14
CCDC88C-210ENST00000555995 DDB1Q16531 1140 aa28.43■■■□□ 2.14
CCDC88C-210ENST00000555995 DISP2A7MBM2 1401 aa28.43■■■□□ 2.14
CCDC88C-210ENST00000555995 NLRP2Q9NX02 1062 aa28.42■■■□□ 2.14
CCDC88C-210ENST00000555995 SMG6Q86US8 1419 aaKnown RBP28.42■■■□□ 2.14
CCDC88C-210ENST00000555995 NSD2O96028 1365 aa28.41■■■□□ 2.14
CCDC88C-210ENST00000555995 HOXC9P31274 260 aa28.41■■■□□ 2.14
CCDC88C-210ENST00000555995 OVOS2A0A0G2JMS6 1433 aa28.41■■■□□ 2.14
CCDC88C-210ENST00000555995 TNS1Q9HBL0 1735 aaKnown RBP28.4■■■□□ 2.14
CCDC88C-210ENST00000555995 BAG6P46379 1132 aa28.39■■■□□ 2.14
CCDC88C-210ENST00000555995 FLT4P35916 1363 aa28.38■■■□□ 2.13
CCDC88C-210ENST00000555995 PANK3Q9H999 370 aa28.38■■■□□ 2.13
CCDC88C-210ENST00000555995 TNS2Q63HR2 1409 aa28.37■■■□□ 2.13
CCDC88C-210ENST00000555995 FAM182BQ5T319 152 aa28.37■■■□□ 2.13
CCDC88C-210ENST00000555995 PEAK1Q9H792 1746 aa28.37■■■□□ 2.13
CCDC88C-210ENST00000555995 KIF7Q2M1P5 1343 aa28.37■■■□□ 2.13
CCDC88C-210ENST00000555995 RRS1Q15050 365 aaKnown RBP28.36■■■□□ 2.13
CCDC88C-210ENST00000555995 IL2RBP14784 551 aa28.34■■■□□ 2.13
CCDC88C-210ENST00000555995 INSRP06213 1382 aa28.34■■■□□ 2.13
CCDC88C-210ENST00000555995 EXOC5O00471 708 aa28.33■■■□□ 2.13
CCDC88C-210ENST00000555995 MAP2P11137 1827 aaKnown RBP28.33■■■□□ 2.13
CCDC88C-210ENST00000555995 LTV1Q96GA3 475 aaPredicted RBP28.32■■■□□ 2.12
CCDC88C-210ENST00000555995 BCL9O00512 1426 aa28.32■■■□□ 2.12
CCDC88C-210ENST00000555995 FBLN1P23142 703 aa28.31■■■□□ 2.12
CCDC88C-210ENST00000555995 KNSTRNQ9Y448 316 aa28.31■■■□□ 2.12
CCDC88C-210ENST00000555995 SBF2Q86WG5 1849 aa28.31■■■□□ 2.12
CCDC88C-210ENST00000555995 PARD3Q8TEW0 1356 aa28.29■■■□□ 2.12
CCDC88C-210ENST00000555995 DEFB132Q7Z7B7 95 aa28.29■■■□□ 2.12
CCDC88C-210ENST00000555995 RGPD2P0DJD1 1756 aa28.29■■■□□ 2.12
CCDC88C-210ENST00000555995 TRIM37O94972 964 aa28.28■■■□□ 2.12
CCDC88C-210ENST00000555995 RGPD3A6NKT7 1758 aaPredicted RBP28.25■■■□□ 2.11
CCDC88C-210ENST00000555995 RGPD4Q7Z3J3 1758 aa28.25■■■□□ 2.11
CCDC88C-210ENST00000555995 EMILIN1Q9Y6C2 1016 aa28.25■■■□□ 2.11
CCDC88C-210ENST00000555995 MARCH10Q8NA82 808 aaPredicted RBP28.24■■■□□ 2.11
CCDC88C-210ENST00000555995 WASHC2AQ641Q2 1341 aa28.22■■■□□ 2.11
CCDC88C-210ENST00000555995 APBA3O96018 575 aa28.22■■■□□ 2.11
CCDC88C-210ENST00000555995 HSP90AB2PQ58FF8 381 aa28.22■■■□□ 2.11
CCDC88C-210ENST00000555995 PPM1GO15355 546 aaPredicted RBP28.21■■■□□ 2.11
CCDC88C-210ENST00000555995 MORC1Q86VD1 984 aa28.2■■■□□ 2.1
CCDC88C-210ENST00000555995 EN1Q05925 392 aaPredicted RBP28.19■■■□□ 2.1
CCDC88C-210ENST00000555995 POLKQ9UBT6 870 aa28.19■■■□□ 2.1
CCDC88C-210ENST00000555995 NHSQ6T4R5 1651 aa28.19■■■□□ 2.1
CCDC88C-210ENST00000555995 RREB1Q92766 1687 aa28.19■■■□□ 2.1
CCDC88C-210ENST00000555995 NBPF6Q5VWK0 638 aa28.18■■■□□ 2.1
CCDC88C-210ENST00000555995 RAPGEF4Q8WZA2 1011 aa28.18■■■□□ 2.1
CCDC88C-210ENST00000555995 NBPF4Q96M43 638 aa28.18■■■□□ 2.1
CCDC88C-210ENST00000555995 BCL11BQ9C0K0 894 aaPredicted RBP28.18■■■□□ 2.1
CCDC88C-210ENST00000555995 TNNT2P45379 298 aaPredicted RBP28.16■■■□□ 2.1
CCDC88C-210ENST00000555995 MEGF6O75095 1541 aa28.16■■■□□ 2.1
CCDC88C-210ENST00000555995 AMER1Q5JTC6 1135 aaPredicted RBP28.15■■■□□ 2.1
CCDC88C-210ENST00000555995 NCAPD2Q15021 1401 aa28.15■■■□□ 2.1
CCDC88C-210ENST00000555995 TATP17735 454 aaPredicted RBP28.14■■■□□ 2.1
CCDC88C-210ENST00000555995 CAMKK2Q96RR4 588 aa28.14■■■□□ 2.1
CCDC88C-210ENST00000555995 SHANK3Q9BYB0 1731 aa28.14■■■□□ 2.1
CCDC88C-210ENST00000555995 NPC1L1Q9UHC9 1359 aa28.13■■■□□ 2.09
CCDC88C-210ENST00000555995 EZH2Q15910 746 aaKnown RBP28.12■■■□□ 2.09
CCDC88C-210ENST00000555995 ZCRB1Q8TBF4 217 aaKnown RBP28.12■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms