RNA–Protein interactions for RNA: ENST00000555934.1

LINC00643-204, long intergenic non-protein coding RNA 643, humanhuman

TSL 2

Gene LINC00643, Length 1,184 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-204ENST00000555934 RNF135Q8IUD6 432 aa10.73□□□□□ -0.69
LINC00643-204ENST00000555934 DEPDC4Q8N2C3 294 aa10.73□□□□□ -0.69
LINC00643-204ENST00000555934 PBXIP1Q96AQ6 731 aa10.72□□□□□ -0.69
LINC00643-204ENST00000555934 SLC10A4Q96EP9 437 aa10.72□□□□□ -0.69
LINC00643-204ENST00000555934 GIGYF1O75420 1035 aaPredicted RBP10.7□□□□□ -0.7
LINC00643-204ENST00000555934 RAB15P59190 212 aa10.7□□□□□ -0.7
LINC00643-204ENST00000555934 TSGA10IPQ3SY00 556 aa10.7□□□□□ -0.7
LINC00643-204ENST00000555934 RC3H1Q5TC82 1133 aaKnown RBP10.7□□□□□ -0.7
LINC00643-204ENST00000555934 RETREG2Q8NC44 543 aa10.7□□□□□ -0.7
LINC00643-204ENST00000555934 ZNF592Q92610 1267 aa10.7□□□□□ -0.7
LINC00643-204ENST00000555934 ACIN1Q9UKV3 1341 aaKnown RBP10.69□□□□□ -0.7
LINC00643-204ENST00000555934 USP17L5A8MUK1 530 aa10.69□□□□□ -0.7
LINC00643-204ENST00000555934 WNT7AO00755 349 aa10.69□□□□□ -0.7
LINC00643-204ENST00000555934 PPP1R15AO75807 674 aaPredicted RBP10.69□□□□□ -0.7
LINC00643-204ENST00000555934 MCCD1P59942 119 aaPredicted RBP10.69□□□□□ -0.7
LINC00643-204ENST00000555934 EHBP1Q8NDI1 1231 aa10.69□□□□□ -0.7
LINC00643-204ENST00000555934 C1QTNF2Q9BXJ5 285 aa10.69□□□□□ -0.7
LINC00643-204ENST00000555934 USP17L3A6NCW0 530 aa10.68□□□□□ -0.7
LINC00643-204ENST00000555934 USP17L4A6NCW7 530 aa10.68□□□□□ -0.7
LINC00643-204ENST00000555934 USP17L2Q6R6M4 530 aa10.68□□□□□ -0.7
LINC00643-204ENST00000555934 USP17L1Q7RTZ2 530 aa10.68□□□□□ -0.7
LINC00643-204ENST00000555934 PLPP7Q8NBV4 271 aa10.68□□□□□ -0.7
LINC00643-204ENST00000555934 VARSP26640 1264 aaKnown RBP10.67□□□□□ -0.7
LINC00643-204ENST00000555934 SRPK2P78362 688 aaKnown RBP10.67□□□□□ -0.7
LINC00643-204ENST00000555934 ARID5BQ14865 1188 aa10.67□□□□□ -0.7
LINC00643-204ENST00000555934 PHTF2Q8N3S3 785 aa10.67□□□□□ -0.7
LINC00643-204ENST00000555934 PKD2L1Q9P0L9 805 aa10.67□□□□□ -0.7
LINC00643-204ENST00000555934 FOXC1Q12948 553 aa10.66□□□□□ -0.7
LINC00643-204ENST00000555934 NCOA4Q13772 614 aa10.66□□□□□ -0.7
LINC00643-204ENST00000555934 NFATC2IPQ8NCF5 419 aa10.66□□□□□ -0.7
LINC00643-204ENST00000555934 MRGPRX2Q96LB1 330 aa10.66□□□□□ -0.7
LINC00643-204ENST00000555934 CCDC85AQ96PX6 553 aaPredicted RBP10.66□□□□□ -0.7
LINC00643-204ENST00000555934 PDIA4P13667 645 aaKnown RBP10.65□□□□□ -0.7
LINC00643-204ENST00000555934 VRTNQ9H8Y1 702 aa10.65□□□□□ -0.7
LINC00643-204ENST00000555934 GDF9O60383 454 aa10.64□□□□□ -0.71
LINC00643-204ENST00000555934 NBPF20Q3BBV1 942 aa10.64□□□□□ -0.71
LINC00643-204ENST00000555934 OXLD1Q5BKU9 147 aa10.64□□□□□ -0.71
LINC00643-204ENST00000555934 TRIM67Q6ZTA4 783 aa10.64□□□□□ -0.71
LINC00643-204ENST00000555934 TRMT44Q8IYL2 757 aaKnown RBP10.64□□□□□ -0.71
LINC00643-204ENST00000555934 CARNS1A5YM72 827 aa10.63□□□□□ -0.71
LINC00643-204ENST00000555934 TNFRSF10AO00220 468 aa10.63□□□□□ -0.71
LINC00643-204ENST00000555934 KANK4Q5T7N3 995 aaPredicted RBP10.63□□□□□ -0.71
LINC00643-204ENST00000555934 VASH1Q7L8A9 365 aaPredicted RBP10.63□□□□□ -0.71
LINC00643-204ENST00000555934 KCTD15Q96SI1 283 aaPredicted RBP10.63□□□□□ -0.71
LINC00643-204ENST00000555934 MKRN1Q9UHC7 482 aaKnown RBP10.63□□□□□ -0.71
LINC00643-204ENST00000555934 DOLKQ9UPQ8 538 aa10.63□□□□□ -0.71
LINC00643-204ENST00000555934 TLL2Q9Y6L7 1015 aa10.63□□□□□ -0.71
LINC00643-204ENST00000555934 SIAH2O43255 324 aa10.62□□□□□ -0.71
LINC00643-204ENST00000555934 CDCA7Q9BWT1 371 aaPredicted RBP10.62□□□□□ -0.71
LINC00643-204ENST00000555934 PDZRN3Q9UPQ7 1066 aa10.62□□□□□ -0.71
LINC00643-204ENST00000555934 PCDHB11Q9Y5F2 797 aa10.62□□□□□ -0.71
LINC00643-204ENST00000555934 PRR20EP86478 221 aa10.61□□□□□ -0.71
LINC00643-204ENST00000555934 PRR20CP86479 221 aa10.61□□□□□ -0.71
LINC00643-204ENST00000555934 PRR20DP86480 221 aa10.61□□□□□ -0.71
LINC00643-204ENST00000555934 PRR20BP86481 221 aa10.61□□□□□ -0.71
LINC00643-204ENST00000555934 PRR20AP86496 221 aa10.61□□□□□ -0.71
LINC00643-204ENST00000555934 PLEKHM2Q8IWE5 1019 aa10.61□□□□□ -0.71
LINC00643-204ENST00000555934 CSB-PGBD3P0DP91 1061 aa10.6□□□□□ -0.71
LINC00643-204ENST00000555934 EML3Q32P44 896 aa10.6□□□□□ -0.71
LINC00643-204ENST00000555934 ESPNB1AK53 854 aa10.59□□□□□ -0.71
LINC00643-204ENST00000555934 MAP7D1Q3KQU3 841 aa10.59□□□□□ -0.71
LINC00643-204ENST00000555934 RNF20Q5VTR2 975 aa10.59□□□□□ -0.71
LINC00643-204ENST00000555934 MPNDQ8N594 471 aa10.59□□□□□ -0.71
LINC00643-204ENST00000555934 CHIC2Q9UKJ5 165 aa10.59□□□□□ -0.71
LINC00643-204ENST00000555934 CDV3Q9UKY7 258 aaKnown RBP10.59□□□□□ -0.71
LINC00643-204ENST00000555934 RASA1P20936 1047 aa10.58□□□□□ -0.72
LINC00643-204ENST00000555934 FSHRP23945 695 aa10.58□□□□□ -0.72
LINC00643-204ENST00000555934 INTS6LQ5JSJ4 861 aaKnown RBP10.58□□□□□ -0.72
LINC00643-204ENST00000555934 CYP4X1Q8N118 509 aa10.58□□□□□ -0.72
LINC00643-204ENST00000555934 SNIP1Q8TAD8 396 aaKnown RBP10.58□□□□□ -0.72
LINC00643-204ENST00000555934 CDK15Q96Q40 435 aa10.58□□□□□ -0.72
LINC00643-204ENST00000555934 MAP4K5Q9Y4K4 846 aa10.58□□□□□ -0.72
LINC00643-204ENST00000555934 ATG7O95352 703 aa10.57□□□□□ -0.72
LINC00643-204ENST00000555934 CRTC2Q53ET0 693 aaPredicted RBP10.57□□□□□ -0.72
LINC00643-204ENST00000555934 ZNF787Q6DD87 383 aa10.57□□□□□ -0.72
LINC00643-204ENST00000555934 TOR4AQ9NXH8 423 aa10.57□□□□□ -0.72
LINC00643-204ENST00000555934 LARP1Q6PKG0 1096 aaKnown RBP10.56□□□□□ -0.72
LINC00643-204ENST00000555934 ZNF594Q96JF6 807 aaPredicted RBP10.56□□□□□ -0.72
LINC00643-204ENST00000555934 NOD1Q9Y239 953 aa10.56□□□□□ -0.72
LINC00643-204ENST00000555934 TTC24A2A3L6 582 aaPredicted RBP10.55□□□□□ -0.72
LINC00643-204ENST00000555934 USP17L15C9J2P7 530 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 USP17L10C9JJH3 530 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 USP17L13C9JLJ4 530 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 USP17L12C9JPN9 530 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 USP17L11C9JVI0 530 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 USP17L21D6R901 530 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 USP17L18D6R9N7 530 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 USP17L22D6RA61 530 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 USP17L17D6RBQ6 530 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 USP17L19D6RCP7 530 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 USP17L20D6RJB6 530 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 ATP5J2-PTCD1G3V325 749 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 ERVH48-1M5A8F1 160 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 ALDH1A1P00352 501 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 USP17L24Q0WX57 530 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 TMPRSS4Q9NRS4 437 aa10.55□□□□□ -0.72
LINC00643-204ENST00000555934 NOVA2Q9UNW9 492 aaKnown RBP10.55□□□□□ -0.72
LINC00643-204ENST00000555934 LZTS3O60299 673 aaPredicted RBP10.54□□□□□ -0.72
LINC00643-204ENST00000555934 ADH1CP00326 375 aa10.54□□□□□ -0.72
LINC00643-204ENST00000555934 GRM5P41594 1212 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms