RNA–Protein interactions for RNA: ENST00000555612.5

SYNE2-220, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 6,766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-220ENST00000555612 EPS15P42566 896 aa9.87□□□□□ -0.83
SYNE2-220ENST00000555612 CDK5RAP3Q96JB5 506 aa9.87□□□□□ -0.83
SYNE2-220ENST00000555612 CDK13Q14004 1512 aaKnown RBP9.86□□□□□ -0.83
SYNE2-220ENST00000555612 BRD4O60885 1362 aaPredicted RBP9.86□□□□□ -0.83
SYNE2-220ENST00000555612 KIAA0586Q9BVV6 1533 aa9.86□□□□□ -0.83
SYNE2-220ENST00000555612 ADGRL1O94910 1474 aa9.86□□□□□ -0.83
SYNE2-220ENST00000555612 UTP3Q9NQZ2 479 aaKnown RBP eCLIP9.86□□□□□ -0.83
SYNE2-220ENST00000555612 HMGB2P26583 209 aaKnown RBP9.86□□□□□ -0.83
SYNE2-220ENST00000555612 EPRSP07814 1512 aaKnown RBP9.86□□□□□ -0.83
SYNE2-220ENST00000555612 CCT4P50991 539 aaKnown RBP9.86□□□□□ -0.83
SYNE2-220ENST00000555612 MAP4K4O95819 1239 aaPredicted RBP9.86□□□□□ -0.83
SYNE2-220ENST00000555612 ODF2Q5BJF6 829 aa9.86□□□□□ -0.83
SYNE2-220ENST00000555612 TMOD2Q9NZR1 351 aa9.86□□□□□ -0.83
SYNE2-220ENST00000555612 KRT18P05783 430 aaKnown RBP9.85□□□□□ -0.83
SYNE2-220ENST00000555612 NAP1L1P55209 391 aaKnown RBP9.85□□□□□ -0.83
SYNE2-220ENST00000555612 DAPK1P53355 1430 aa9.85□□□□□ -0.83
SYNE2-220ENST00000555612 HIP1O00291 1037 aa9.85□□□□□ -0.83
SYNE2-220ENST00000555612 ZFYVE27Q5T4F4 411 aa9.85□□□□□ -0.83
SYNE2-220ENST00000555612 ZNF652Q9Y2D9 606 aa9.85□□□□□ -0.83
SYNE2-220ENST00000555612 URB2Q14146 1524 aaKnown RBP9.85□□□□□ -0.83
SYNE2-220ENST00000555612 GNAT3A8MTJ3 354 aa9.85□□□□□ -0.83
SYNE2-220ENST00000555612 MIS18AQ9NYP9 233 aa9.85□□□□□ -0.83
SYNE2-220ENST00000555612 UBAP1LF5GYI3 381 aa9.85□□□□□ -0.83
SYNE2-220ENST00000555612 SKOR2Q2VWA4 1001 aaPredicted RBP9.85□□□□□ -0.83
SYNE2-220ENST00000555612 CEP126Q9P2H0 1117 aa9.85□□□□□ -0.83
SYNE2-220ENST00000555612 SASS6Q6UVJ0 657 aa9.85□□□□□ -0.83
SYNE2-220ENST00000555612 PAF1Q8N7H5 531 aa9.85□□□□□ -0.83
SYNE2-220ENST00000555612 CCDC70Q6NSX1 233 aa9.84□□□□□ -0.83
SYNE2-220ENST00000555612 C22orf23Q9BZE7 217 aa9.84□□□□□ -0.83
SYNE2-220ENST00000555612 NBPF8Q3BBV2 869 aa9.84□□□□□ -0.83
SYNE2-220ENST00000555612 NUP133Q8WUM0 1156 aa9.84□□□□□ -0.83
SYNE2-220ENST00000555612 AACSQ86V21 672 aa9.84□□□□□ -0.83
SYNE2-220ENST00000555612 ZNF592Q92610 1267 aa9.84□□□□□ -0.83
SYNE2-220ENST00000555612 LRP2BPQ9P2M1 347 aa9.84□□□□□ -0.83
SYNE2-220ENST00000555612 IBSPP21815 317 aaPredicted RBP9.84□□□□□ -0.83
SYNE2-220ENST00000555612 BCL11BQ9C0K0 894 aaPredicted RBP9.84□□□□□ -0.83
SYNE2-220ENST00000555612 OFD1O75665 1012 aa9.83□□□□□ -0.84
SYNE2-220ENST00000555612 EXOC5O00471 708 aa9.83□□□□□ -0.84
SYNE2-220ENST00000555612 SRGAP3O43295 1099 aa9.83□□□□□ -0.84
SYNE2-220ENST00000555612 ABCF2Q9UG63 623 aa9.83□□□□□ -0.84
SYNE2-220ENST00000555612 TDO2P48775 406 aa9.83□□□□□ -0.84
SYNE2-220ENST00000555612 ZSCAN25Q6NSZ9 544 aa9.83□□□□□ -0.84
SYNE2-220ENST00000555612 NME9Q86XW9 330 aa9.83□□□□□ -0.84
SYNE2-220ENST00000555612 MPHOSPH10O00566 681 aaKnown RBP9.83□□□□□ -0.84
SYNE2-220ENST00000555612 TTLL12Q14166 644 aaPredicted RBP9.83□□□□□ -0.84
SYNE2-220ENST00000555612 KRT28Q7Z3Y7 464 aa9.83□□□□□ -0.84
SYNE2-220ENST00000555612 LRRCC1Q9C099 1032 aa9.83□□□□□ -0.84
SYNE2-220ENST00000555612 ANKIB1Q9P2G1 1089 aa9.83□□□□□ -0.84
SYNE2-220ENST00000555612 MAGI1Q96QZ7 1491 aaPredicted RBP9.82□□□□□ -0.84
SYNE2-220ENST00000555612 AAMPQ13685 434 aa9.82□□□□□ -0.84
SYNE2-220ENST00000555612 MCM10Q7L590 875 aa9.82□□□□□ -0.84
SYNE2-220ENST00000555612 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.82□□□□□ -0.84
SYNE2-220ENST00000555612 CCDC69A6NI79 296 aa9.82□□□□□ -0.84
SYNE2-220ENST00000555612 IDH1O75874 414 aaKnown RBP9.82□□□□□ -0.84
SYNE2-220ENST00000555612 SOGA3Q5TF21 947 aa9.82□□□□□ -0.84
SYNE2-220ENST00000555612 OLFM4Q6UX06 510 aa9.82□□□□□ -0.84
SYNE2-220ENST00000555612 SDF4Q9BRK5 362 aa9.82□□□□□ -0.84
SYNE2-220ENST00000555612 AKNAQ7Z591 1439 aa9.82□□□□□ -0.84
SYNE2-220ENST00000555612 NSD3Q9BZ95 1437 aa9.82□□□□□ -0.84
SYNE2-220ENST00000555612 PLB1Q6P1J6 1458 aa9.82□□□□□ -0.84
SYNE2-220ENST00000555612 METTL24Q5JXM2 366 aa9.81□□□□□ -0.84
SYNE2-220ENST00000555612 CCDC141Q6ZP82 1450 aa9.81□□□□□ -0.84
SYNE2-220ENST00000555612 STK3Q13188 491 aa9.81□□□□□ -0.84
SYNE2-220ENST00000555612 HOMER1Q86YM7 354 aa9.81□□□□□ -0.84
SYNE2-220ENST00000555612 ZHX3Q9H4I2 956 aa9.81□□□□□ -0.84
SYNE2-220ENST00000555612 BCAR3O75815 825 aa9.81□□□□□ -0.84
SYNE2-220ENST00000555612 TXLNAP40222 546 aa9.81□□□□□ -0.84
SYNE2-220ENST00000555612 NEK4P51957 841 aa9.81□□□□□ -0.84
SYNE2-220ENST00000555612 NUCB2P80303 420 aa9.81□□□□□ -0.84
SYNE2-220ENST00000555612 RPGRQ92834 1020 aaKnown RBP9.81□□□□□ -0.84
SYNE2-220ENST00000555612 AK7Q96M32 723 aa9.81□□□□□ -0.84
SYNE2-220ENST00000555612 CHMP5Q9NZZ3 219 aa9.8□□□□□ -0.84
SYNE2-220ENST00000555612 FCHSD2O94868 740 aa9.8□□□□□ -0.84
SYNE2-220ENST00000555612 THUMPD2Q9BTF0 503 aaKnown RBP9.8□□□□□ -0.84
SYNE2-220ENST00000555612 LRPPRCP42704 1394 aaKnown RBP9.8□□□□□ -0.84
SYNE2-220ENST00000555612 TRIM22Q8IYM9 498 aa9.8□□□□□ -0.84
SYNE2-220ENST00000555612 PIBF1Q8WXW3 757 aa9.8□□□□□ -0.84
SYNE2-220ENST00000555612 TOM1O60784 492 aa9.8□□□□□ -0.84
SYNE2-220ENST00000555612 CEBPZQ03701 1054 aaKnown RBP9.8□□□□□ -0.84
SYNE2-220ENST00000555612 IL1RAPL2Q9NP60 686 aa9.8□□□□□ -0.84
SYNE2-220ENST00000555612 IDI1Q13907 227 aa9.8□□□□□ -0.84
SYNE2-220ENST00000555612 NFE2L2Q16236 605 aa9.8□□□□□ -0.84
SYNE2-220ENST00000555612 GCC1Q96CN9 775 aa9.8□□□□□ -0.84
SYNE2-220ENST00000555612 MYD88Q99836 296 aa9.8□□□□□ -0.84
SYNE2-220ENST00000555612 PDZRN3Q9UPQ7 1066 aa9.8□□□□□ -0.84
SYNE2-220ENST00000555612 DENND4BO75064 1496 aaPredicted RBP9.8□□□□□ -0.84
SYNE2-220ENST00000555612 WDHD1O75717 1129 aaPredicted RBP9.8□□□□□ -0.84
SYNE2-220ENST00000555612 CHMP4BP1P59074 171 aa9.8□□□□□ -0.84
SYNE2-220ENST00000555612 DCTN1Q14203 1278 aa9.8□□□□□ -0.84
SYNE2-220ENST00000555612 CHRNA2Q15822 529 aa9.8□□□□□ -0.84
SYNE2-220ENST00000555612 CRACR2BQ8N4Y2 399 aaPredicted RBP9.8□□□□□ -0.84
SYNE2-220ENST00000555612 IQGAP2Q13576 1575 aa9.79□□□□□ -0.84
SYNE2-220ENST00000555612 UBAC1Q9BSL1 405 aa9.79□□□□□ -0.84
SYNE2-220ENST00000555612 PDILTQ8N807 584 aa9.79□□□□□ -0.84
SYNE2-220ENST00000555612 TRMT112Q9UI30 125 aaKnown RBP9.79□□□□□ -0.84
SYNE2-220ENST00000555612 USP5P45974 858 aa9.79□□□□□ -0.84
SYNE2-220ENST00000555612 CAVIN4Q5BKX8 364 aa9.79□□□□□ -0.84
SYNE2-220ENST00000555612 AMOTQ4VCS5 1084 aa9.78□□□□□ -0.84
SYNE2-220ENST00000555612 WDR62O43379 1518 aa9.78□□□□□ -0.84
SYNE2-220ENST00000555612 WASLO00401 505 aaPredicted RBP9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms