RNA–Protein interactions for RNA: ENST00000555557.5

SRP54-208, Transcript of signal recognition particle 54, humanhuman

TSL 2 BASIC

Gene SRP54, Length 1,949 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-208ENST00000555557 SLIT3O75094 1523 aa13.57□□□□□ -0.24
SRP54-208ENST00000555557 LRRC59Q96AG4 307 aaKnown RBP13.57□□□□□ -0.24
SRP54-208ENST00000555557 LTV1Q96GA3 475 aaPredicted RBP13.57□□□□□ -0.24
SRP54-208ENST00000555557 HSPA1LP34931 641 aa13.56□□□□□ -0.24
SRP54-208ENST00000555557 BLMP54132 1417 aaPredicted RBP13.56□□□□□ -0.24
SRP54-208ENST00000555557 HMOX1P09601 288 aa13.56□□□□□ -0.24
SRP54-208ENST00000555557 IP6K1Q92551 441 aa13.56□□□□□ -0.24
SRP54-208ENST00000555557 AXIN2Q9Y2T1 843 aa13.55□□□□□ -0.24
SRP54-208ENST00000555557 APAF1O14727 1248 aa13.54□□□□□ -0.24
SRP54-208ENST00000555557 HAP1P54257 671 aaPredicted RBP13.54□□□□□ -0.24
SRP54-208ENST00000555557 CHRNA2Q15822 529 aa13.54□□□□□ -0.24
SRP54-208ENST00000555557 AHDC1Q5TGY3 1603 aaPredicted RBP13.54□□□□□ -0.24
SRP54-208ENST00000555557 KIF24Q5T7B8 1368 aa13.53□□□□□ -0.24
SRP54-208ENST00000555557 CENPBP07199 599 aaPredicted RBP13.52□□□□□ -0.24
SRP54-208ENST00000555557 ILDR2Q71H61 639 aa13.52□□□□□ -0.24
SRP54-208ENST00000555557 AEBP1Q8IUX7 1158 aa13.52□□□□□ -0.24
SRP54-208ENST00000555557 RUNDC1Q96C34 613 aa13.52□□□□□ -0.24
SRP54-208ENST00000555557 PLEKHF1Q96S99 279 aa13.52□□□□□ -0.24
SRP54-208ENST00000555557 EYA1Q99502 592 aa13.52□□□□□ -0.24
SRP54-208ENST00000555557 KIAA0232Q92628 1395 aa13.52□□□□□ -0.24
SRP54-208ENST00000555557 SULT6B1Q6IMI4 303 aa13.52□□□□□ -0.25
SRP54-208ENST00000555557 RSPH6AQ9H0K4 717 aa13.52□□□□□ -0.25
SRP54-208ENST00000555557 RRP7AQ9Y3A4 280 aaKnown RBP13.52□□□□□ -0.25
SRP54-208ENST00000555557 ZBED9Q6R2W3 1325 aa13.52□□□□□ -0.25
SRP54-208ENST00000555557 RTL1A6NKG5 1358 aa13.52□□□□□ -0.25
SRP54-208ENST00000555557 LTN1O94822 1766 aa13.52□□□□□ -0.25
SRP54-208ENST00000555557 FCHSD2O94868 740 aa13.51□□□□□ -0.25
SRP54-208ENST00000555557 PRKAR2BP31323 418 aa13.51□□□□□ -0.25
SRP54-208ENST00000555557 NEUROD2Q15784 382 aa13.51□□□□□ -0.25
SRP54-208ENST00000555557 PHRF1Q9P1Y6 1649 aaKnown RBP13.51□□□□□ -0.25
SRP54-208ENST00000555557 TCP11L2Q8N4U5 519 aa13.51□□□□□ -0.25
SRP54-208ENST00000555557 USHBP1Q8N6Y0 703 aa13.5□□□□□ -0.25
SRP54-208ENST00000555557 PHACTR3Q96KR7 559 aa13.5□□□□□ -0.25
SRP54-208ENST00000555557 PRDM11Q9NQV5 511 aa13.5□□□□□ -0.25
SRP54-208ENST00000555557 PHLPP1O60346 1717 aa13.5□□□□□ -0.25
SRP54-208ENST00000555557 ANKRD24Q8TF21 1146 aa13.49□□□□□ -0.25
SRP54-208ENST00000555557 CRYBG1Q9Y4K1 1723 aa13.49□□□□□ -0.25
SRP54-208ENST00000555557 COL16A1Q07092 1604 aaPredicted RBP13.49□□□□□ -0.25
SRP54-208ENST00000555557 NBPF6Q5VWK0 638 aa13.49□□□□□ -0.25
SRP54-208ENST00000555557 NBPF4Q96M43 638 aa13.49□□□□□ -0.25
SRP54-208ENST00000555557 CPDO75976 1380 aa13.48□□□□□ -0.25
SRP54-208ENST00000555557 MAPK8IP3Q9UPT6 1336 aa13.48□□□□□ -0.25
SRP54-208ENST00000555557 FAM83GA6ND36 823 aa13.48□□□□□ -0.25
SRP54-208ENST00000555557 IGSF1Q8N6C5 1336 aa13.47□□□□□ -0.25
SRP54-208ENST00000555557 PNNQ9H307 717 aaKnown RBP13.47□□□□□ -0.25
SRP54-208ENST00000555557 NUTM2BA6NNL0 878 aaPredicted RBP13.47□□□□□ -0.25
SRP54-208ENST00000555557 NUTM2EB1AL46 878 aaPredicted RBP13.47□□□□□ -0.25
SRP54-208ENST00000555557 NUTM2AQ8IVF1 878 aaPredicted RBP13.47□□□□□ -0.25
SRP54-208ENST00000555557 ERBB3P21860 1342 aa13.46□□□□□ -0.25
SRP54-208ENST00000555557 ADAMTS2O95450 1211 aa13.45□□□□□ -0.26
SRP54-208ENST00000555557 CSB-PGBD3P0DP91 1061 aa13.45□□□□□ -0.26
SRP54-208ENST00000555557 TMPOP42166 694 aaKnown RBP13.45□□□□□ -0.26
SRP54-208ENST00000555557 CDCA7LQ96GN5 454 aa13.45□□□□□ -0.26
SRP54-208ENST00000555557 NEFMP07197 916 aa13.45□□□□□ -0.26
SRP54-208ENST00000555557 RGPD1P0DJD0 1748 aa13.44□□□□□ -0.26
SRP54-208ENST00000555557 COL18A1P39060 1754 aa13.44□□□□□ -0.26
SRP54-208ENST00000555557 RIPK4P57078 832 aa13.44□□□□□ -0.26
SRP54-208ENST00000555557 NLRP2Q9NX02 1062 aa13.44□□□□□ -0.26
SRP54-208ENST00000555557 ABCA3Q99758 1704 aa13.44□□□□□ -0.26
SRP54-208ENST00000555557 WWC1Q8IX03 1113 aa13.43□□□□□ -0.26
SRP54-208ENST00000555557 KDRP35968 1356 aa13.43□□□□□ -0.26
SRP54-208ENST00000555557 RGPD5Q99666 1765 aa13.43□□□□□ -0.26
SRP54-208ENST00000555557 ZNF521Q96K83 1311 aa13.43□□□□□ -0.26
SRP54-208ENST00000555557 CAMTA1Q9Y6Y1 1673 aa13.43□□□□□ -0.26
SRP54-208ENST00000555557 STRN4Q9NRL3 753 aa13.43□□□□□ -0.26
SRP54-208ENST00000555557 NFE2L2Q16236 605 aa13.42□□□□□ -0.26
SRP54-208ENST00000555557 BTG4Q9NY30 223 aa13.42□□□□□ -0.26
SRP54-208ENST00000555557 TRIM35Q9UPQ4 493 aa13.42□□□□□ -0.26
SRP54-208ENST00000555557 COL22A1Q8NFW1 1626 aaPredicted RBP13.42□□□□□ -0.26
SRP54-208ENST00000555557 EVA1CP58658 441 aa13.41□□□□□ -0.26
SRP54-208ENST00000555557 SPINK5Q9NQ38 1064 aaPredicted RBP13.41□□□□□ -0.26
SRP54-208ENST00000555557 JCADQ9P266 1359 aa13.41□□□□□ -0.26
SRP54-208ENST00000555557 MTHFSDQ2M296 383 aaKnown RBP13.41□□□□□ -0.26
SRP54-208ENST00000555557 PHF23Q9BUL5 403 aaPredicted RBP13.41□□□□□ -0.26
SRP54-208ENST00000555557 RGPD2P0DJD1 1756 aa13.4□□□□□ -0.26
SRP54-208ENST00000555557 GOLGA2Q08379 1002 aa13.4□□□□□ -0.26
SRP54-208ENST00000555557 LARP1Q6PKG0 1096 aaKnown RBP13.4□□□□□ -0.26
SRP54-208ENST00000555557 TOM1L2Q6ZVM7 507 aa13.4□□□□□ -0.26
SRP54-208ENST00000555557 NGEFQ8N5V2 710 aa13.4□□□□□ -0.26
SRP54-208ENST00000555557 CCDC27Q2M243 656 aa13.39□□□□□ -0.27
SRP54-208ENST00000555557 COL5A2P05997 1499 aaPredicted RBP13.39□□□□□ -0.27
SRP54-208ENST00000555557 WDR17Q8IZU2 1322 aa13.39□□□□□ -0.27
SRP54-208ENST00000555557 PDE3BQ13370 1112 aa13.39□□□□□ -0.27
SRP54-208ENST00000555557 THUMPD2Q9BTF0 503 aaKnown RBP13.39□□□□□ -0.27
SRP54-208ENST00000555557 LMO7Q8WWI1 1683 aa13.39□□□□□ -0.27
SRP54-208ENST00000555557 ABCC6O95255 1503 aa13.38□□□□□ -0.27
SRP54-208ENST00000555557 DCTN1Q14203 1278 aa13.38□□□□□ -0.27
SRP54-208ENST00000555557 USP35Q9P2H5 1018 aa13.37□□□□□ -0.27
SRP54-208ENST00000555557 SLFN5Q08AF3 891 aa13.37□□□□□ -0.27
SRP54-208ENST00000555557 NCBP3Q53F19 620 aaKnown RBP13.37□□□□□ -0.27
SRP54-208ENST00000555557 NCAPD2Q15021 1401 aa13.36□□□□□ -0.27
SRP54-208ENST00000555557 WDR63Q8IWG1 891 aa13.36□□□□□ -0.27
SRP54-208ENST00000555557 GAS2L2Q8NHY3 880 aa13.36□□□□□ -0.27
SRP54-208ENST00000555557 RAPGEF4Q8WZA2 1011 aa13.36□□□□□ -0.27
SRP54-208ENST00000555557 MCM10Q7L590 875 aa13.35□□□□□ -0.27
SRP54-208ENST00000555557 C8orf37Q96NL8 207 aa13.35□□□□□ -0.27
SRP54-208ENST00000555557 DUSP27Q5VZP5 1158 aa13.35□□□□□ -0.27
SRP54-208ENST00000555557 CARD10Q9BWT7 1032 aa13.35□□□□□ -0.27
SRP54-208ENST00000555557 SPATA31A6Q5VVP1 1343 aa13.34□□□□□ -0.27
SRP54-208ENST00000555557 E9PSI1 815 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 68.2 ms