RNA–Protein interactions for RNA: ENST00000555259.5

SCFD1-215, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,553 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-215ENST00000555259 NLRP13Q86W25 1043 aa14.23□□□□□ -0.13
SCFD1-215ENST00000555259 KDM2AQ9Y2K7 1162 aa14.23□□□□□ -0.13
SCFD1-215ENST00000555259 DCAF11Q8TEB1 546 aa14.22□□□□□ -0.13
SCFD1-215ENST00000555259 SGIP1Q9BQI5 828 aa14.22□□□□□ -0.13
SCFD1-215ENST00000555259 STK32BQ9NY57 414 aa14.22□□□□□ -0.13
SCFD1-215ENST00000555259 BCL9O00512 1426 aa14.22□□□□□ -0.13
SCFD1-215ENST00000555259 SLC15A2Q16348 729 aa14.22□□□□□ -0.13
SCFD1-215ENST00000555259 TXNRD1Q16881 649 aa14.22□□□□□ -0.13
SCFD1-215ENST00000555259 MARCH10Q8NA82 808 aaPredicted RBP14.22□□□□□ -0.13
SCFD1-215ENST00000555259 MTFR1LQ9H019 292 aa14.22□□□□□ -0.13
SCFD1-215ENST00000555259 AATKQ6ZMQ8 1374 aa14.2□□□□□ -0.14
SCFD1-215ENST00000555259 ZBTB7CA1YPR0 619 aa14.2□□□□□ -0.14
SCFD1-215ENST00000555259 TOM1L2Q6ZVM7 507 aa14.2□□□□□ -0.14
SCFD1-215ENST00000555259 STAC3Q96MF2 364 aa14.18□□□□□ -0.14
SCFD1-215ENST00000555259 ARXQ96QS3 562 aa14.17□□□□□ -0.14
SCFD1-215ENST00000555259 WNK3Q9BYP7 1800 aa14.17□□□□□ -0.14
SCFD1-215ENST00000555259 MAP3K5Q99683 1374 aa14.17□□□□□ -0.14
SCFD1-215ENST00000555259 WDR17Q8IZU2 1322 aa14.17□□□□□ -0.14
SCFD1-215ENST00000555259 CDCA7Q9BWT1 371 aaPredicted RBP14.17□□□□□ -0.14
SCFD1-215ENST00000555259 AKAP12Q02952 1782 aa14.17□□□□□ -0.14
SCFD1-215ENST00000555259 PPIP5K1Q6PFW1 1433 aa14.16□□□□□ -0.14
SCFD1-215ENST00000555259 SLIT3O75094 1523 aa14.16□□□□□ -0.14
SCFD1-215ENST00000555259 GIGYF1O75420 1035 aaPredicted RBP14.16□□□□□ -0.14
SCFD1-215ENST00000555259 NLRP6P59044 892 aa14.15□□□□□ -0.14
SCFD1-215ENST00000555259 AXIN2Q9Y2T1 843 aa14.15□□□□□ -0.14
SCFD1-215ENST00000555259 BRD4O60885 1362 aaPredicted RBP14.15□□□□□ -0.14
SCFD1-215ENST00000555259 COL18A1P39060 1754 aa14.15□□□□□ -0.14
SCFD1-215ENST00000555259 GPR162Q16538 588 aa14.13□□□□□ -0.15
SCFD1-215ENST00000555259 SRPK2P78362 688 aaKnown RBP14.13□□□□□ -0.15
SCFD1-215ENST00000555259 USP6P35125 1406 aa14.12□□□□□ -0.15
SCFD1-215ENST00000555259 EXOC5O00471 708 aa14.12□□□□□ -0.15
SCFD1-215ENST00000555259 CARD10Q9BWT7 1032 aa14.12□□□□□ -0.15
SCFD1-215ENST00000555259 PAPPAQ13219 1627 aa14.11□□□□□ -0.15
SCFD1-215ENST00000555259 CPSF1Q10570 1443 aaKnown RBP14.11□□□□□ -0.15
SCFD1-215ENST00000555259 CABP2Q9NPB3 220 aa14.1□□□□□ -0.15
SCFD1-215ENST00000555259 TNS2Q63HR2 1409 aa14.1□□□□□ -0.15
SCFD1-215ENST00000555259 CSB-PGBD3P0DP91 1061 aa14.09□□□□□ -0.15
SCFD1-215ENST00000555259 ARHGEF25Q86VW2 580 aa14.09□□□□□ -0.15
SCFD1-215ENST00000555259 PIK3C2AO00443 1686 aa14.09□□□□□ -0.15
SCFD1-215ENST00000555259 NHSQ6T4R5 1651 aa14.09□□□□□ -0.15
SCFD1-215ENST00000555259 RAB3GAP2Q9H2M9 1393 aa14.09□□□□□ -0.15
SCFD1-215ENST00000555259 ZNF827Q17R98 1081 aa14.09□□□□□ -0.15
SCFD1-215ENST00000555259 CABP1Q9NZU7 370 aa14.09□□□□□ -0.15
SCFD1-215ENST00000555259 SHANK3Q9BYB0 1731 aa14.09□□□□□ -0.15
SCFD1-215ENST00000555259 ACSBG1Q96GR2 724 aa14.08□□□□□ -0.16
SCFD1-215ENST00000555259 PELP1Q8IZL8 1130 aaKnown RBP14.07□□□□□ -0.16
SCFD1-215ENST00000555259 KLHL34Q8N239 644 aa14.07□□□□□ -0.16
SCFD1-215ENST00000555259 TRPM1Q7Z4N2 1603 aa14.07□□□□□ -0.16
SCFD1-215ENST00000555259 CCDC7Q96M83 1385 aa14.07□□□□□ -0.16
SCFD1-215ENST00000555259 RGPD5Q99666 1765 aa14.07□□□□□ -0.16
SCFD1-215ENST00000555259 KCNH5Q8NCM2 988 aa14.06□□□□□ -0.16
SCFD1-215ENST00000555259 LRRC4BQ9NT99 713 aa14.06□□□□□ -0.16
SCFD1-215ENST00000555259 KIAA1210Q9ULL0 1709 aa14.06□□□□□ -0.16
SCFD1-215ENST00000555259 CENPJQ9HC77 1338 aaPredicted RBP14.06□□□□□ -0.16
SCFD1-215ENST00000555259 SOX12O15370 315 aa14.05□□□□□ -0.16
SCFD1-215ENST00000555259 NBPF1Q3BBV0 1214 aa14.05□□□□□ -0.16
SCFD1-215ENST00000555259 ABCC6O95255 1503 aa14.05□□□□□ -0.16
SCFD1-215ENST00000555259 POLD1P28340 1107 aa14.05□□□□□ -0.16
SCFD1-215ENST00000555259 SLC16A10Q8TF71 515 aa14.05□□□□□ -0.16
SCFD1-215ENST00000555259 QRICH2Q9H0J4 1663 aa14.04□□□□□ -0.16
SCFD1-215ENST00000555259 BTAF1O14981 1849 aa14.04□□□□□ -0.16
SCFD1-215ENST00000555259 NLGN2Q8NFZ4 835 aa14.04□□□□□ -0.16
SCFD1-215ENST00000555259 AKT1S1Q96B36 256 aa14.04□□□□□ -0.16
SCFD1-215ENST00000555259 COL24A1Q17RW2 1714 aa14.03□□□□□ -0.16
SCFD1-215ENST00000555259 NFAT5O94916 1531 aa14.02□□□□□ -0.16
SCFD1-215ENST00000555259 TTC21BQ7Z4L5 1316 aa14.02□□□□□ -0.16
SCFD1-215ENST00000555259 PNPLA7Q6ZV29 1317 aa14.01□□□□□ -0.17
SCFD1-215ENST00000555259 QSER1Q2KHR3 1735 aa14.01□□□□□ -0.17
SCFD1-215ENST00000555259 GRIN3BO60391 1043 aa14□□□□□ -0.17
SCFD1-215ENST00000555259 YBX3P16989 372 aaKnown RBP eCLIP14□□□□□ -0.175e-7■■■□□ 14.6
SCFD1-215ENST00000555259 SLC27A3Q5K4L6 730 aa14□□□□□ -0.17
SCFD1-215ENST00000555259 ERBB3P21860 1342 aa13.99□□□□□ -0.17
SCFD1-215ENST00000555259 IL2RBP14784 551 aa13.99□□□□□ -0.17
SCFD1-215ENST00000555259 ZNF692Q9BU19 519 aaPredicted RBP13.99□□□□□ -0.17
SCFD1-215ENST00000555259 NLRP2Q9NX02 1062 aa13.99□□□□□ -0.17
SCFD1-215ENST00000555259 ATP10DQ9P241 1426 aa13.99□□□□□ -0.17
SCFD1-215ENST00000555259 TTC21AQ8NDW8 1320 aa13.98□□□□□ -0.17
SCFD1-215ENST00000555259 KAT6BQ8WYB5 2073 aa13.98□□□□□ -0.17
SCFD1-215ENST00000555259 TFCP2L1Q9NZI6 479 aa13.98□□□□□ -0.17
SCFD1-215ENST00000555259 EVC2Q86UK5 1308 aa13.97□□□□□ -0.17
SCFD1-215ENST00000555259 HSPA6P17066 643 aa13.96□□□□□ -0.17
SCFD1-215ENST00000555259 TUBGCP6Q96RT7 1819 aa13.96□□□□□ -0.17
SCFD1-215ENST00000555259 GPBP1L1Q9HC44 474 aaPredicted RBP13.96□□□□□ -0.18
SCFD1-215ENST00000555259 KCNQ4P56696 695 aa13.95□□□□□ -0.18
SCFD1-215ENST00000555259 KTN1Q86UP2 1357 aaKnown RBP13.93□□□□□ -0.18
SCFD1-215ENST00000555259 ADCY9O60503 1353 aa13.92□□□□□ -0.18
SCFD1-215ENST00000555259 DDX54Q8TDD1 881 aaKnown RBP13.92□□□□□ -0.18
SCFD1-215ENST00000555259 ANKRD24Q8TF21 1146 aa13.92□□□□□ -0.18
SCFD1-215ENST00000555259 USP31Q70CQ4 1352 aa13.92□□□□□ -0.18
SCFD1-215ENST00000555259 PIAS4Q8N2W9 510 aaPredicted RBP13.92□□□□□ -0.18
SCFD1-215ENST00000555259 ZNF526Q8TF50 670 aaPredicted RBP13.91□□□□□ -0.18
SCFD1-215ENST00000555259 SYTL4Q96C24 671 aaPredicted RBP13.91□□□□□ -0.18
SCFD1-215ENST00000555259 LY75O60449 1722 aa13.9□□□□□ -0.18
SCFD1-215ENST00000555259 PRIM1P49642 420 aaKnown RBP13.9□□□□□ -0.18
SCFD1-215ENST00000555259 COL23A1Q86Y22 540 aaPredicted RBP13.9□□□□□ -0.18
SCFD1-215ENST00000555259 LTN1O94822 1766 aa13.9□□□□□ -0.18
SCFD1-215ENST00000555259 NSD2O96028 1365 aa13.89□□□□□ -0.19
SCFD1-215ENST00000555259 ANKRD36BQ8N2N9 1353 aa13.89□□□□□ -0.19
SCFD1-215ENST00000555259 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.89□□□□□ -0.192e-7■■■■□ 19.6
SCFD1-215ENST00000555259 USP54Q70EL1 1684 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 125.7 ms