RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 FHDC1Q9C0D6 1143 aaPredicted RBP15.73■□□□□ 0.11
SHMT2-216ENST00000554975 CRB1P82279 1406 aa15.73■□□□□ 0.11
SHMT2-216ENST00000554975 ABTB2Q8N961 1025 aa15.72■□□□□ 0.11
SHMT2-216ENST00000554975 BCL11BQ9C0K0 894 aaPredicted RBP15.72■□□□□ 0.11
SHMT2-216ENST00000554975 CEP350Q5VT06 3117 aa15.71■□□□□ 0.11
SHMT2-216ENST00000554975 SGIP1Q9BQI5 828 aa15.71■□□□□ 0.11
SHMT2-216ENST00000554975 CDK19Q9BWU1 502 aa15.71■□□□□ 0.11
SHMT2-216ENST00000554975 KDM2AQ9Y2K7 1162 aa15.71■□□□□ 0.11
SHMT2-216ENST00000554975 GCP02774 474 aa15.69■□□□□ 0.1
SHMT2-216ENST00000554975 MARCH10Q8NA82 808 aaPredicted RBP15.69■□□□□ 0.1
SHMT2-216ENST00000554975 GOLGB1Q14789 3259 aaKnown RBP15.69■□□□□ 0.1
SHMT2-216ENST00000554975 ZBTB7CA1YPR0 619 aa15.68■□□□□ 0.1
SHMT2-216ENST00000554975 C11orf95C9JLR9 678 aaPredicted RBP15.68■□□□□ 0.1
SHMT2-216ENST00000554975 DDB1Q16531 1140 aa15.68■□□□□ 0.1
SHMT2-216ENST00000554975 PAPPAQ13219 1627 aa15.68■□□□□ 0.1
SHMT2-216ENST00000554975 PLEKHG3A1L390 1219 aa15.67■□□□□ 0.1
SHMT2-216ENST00000554975 TXNRD1Q16881 649 aa15.67■□□□□ 0.1
SHMT2-216ENST00000554975 KAT6BQ8WYB5 2073 aa15.67■□□□□ 0.1
SHMT2-216ENST00000554975 SLIT3O75094 1523 aa15.67■□□□□ 0.1
SHMT2-216ENST00000554975 SLC15A2Q16348 729 aa15.66■□□□□ 0.1
SHMT2-216ENST00000554975 DCAF11Q8TEB1 546 aa15.66■□□□□ 0.1
SHMT2-216ENST00000554975 CCDC61Q9Y6R9 512 aa15.66■□□□□ 0.1
SHMT2-216ENST00000554975 BCL9O00512 1426 aa15.66■□□□□ 0.1
SHMT2-216ENST00000554975 PIK3C2AO00443 1686 aa15.66■□□□□ 0.1
SHMT2-216ENST00000554975 SHANK3Q9BYB0 1731 aa15.65■□□□□ 0.1
SHMT2-216ENST00000554975 NHSQ6T4R5 1651 aa15.65■□□□□ 0.1
SHMT2-216ENST00000554975 STK32BQ9NY57 414 aa15.65■□□□□ 0.1
SHMT2-216ENST00000554975 NLRP13Q86W25 1043 aa15.64■□□□□ 0.09
SHMT2-216ENST00000554975 MTFR1LQ9H019 292 aa15.64■□□□□ 0.09
SHMT2-216ENST00000554975 BTAF1O14981 1849 aa15.64■□□□□ 0.09
SHMT2-216ENST00000554975 AATKQ6ZMQ8 1374 aa15.63■□□□□ 0.09
SHMT2-216ENST00000554975 TOM1L2Q6ZVM7 507 aa15.63■□□□□ 0.09
SHMT2-216ENST00000554975 AXIN2Q9Y2T1 843 aa15.63■□□□□ 0.09
SHMT2-216ENST00000554975 TUBGCP6Q96RT7 1819 aa15.63■□□□□ 0.09
SHMT2-216ENST00000554975 TONSLQ96HA7 1378 aa15.62■□□□□ 0.09
SHMT2-216ENST00000554975 PPIP5K1Q6PFW1 1433 aa15.62■□□□□ 0.09
SHMT2-216ENST00000554975 COL24A1Q17RW2 1714 aa15.62■□□□□ 0.09
SHMT2-216ENST00000554975 ARXQ96QS3 562 aa15.61■□□□□ 0.09
SHMT2-216ENST00000554975 WDR17Q8IZU2 1322 aa15.61■□□□□ 0.09
SHMT2-216ENST00000554975 MAP3K5Q99683 1374 aa15.61■□□□□ 0.09
SHMT2-216ENST00000554975 QSER1Q2KHR3 1735 aa15.6■□□□□ 0.09
SHMT2-216ENST00000554975 KIAA1210Q9ULL0 1709 aa15.6■□□□□ 0.09
SHMT2-216ENST00000554975 GIGYF1O75420 1035 aaPredicted RBP15.59■□□□□ 0.09
SHMT2-216ENST00000554975 QRICH2Q9H0J4 1663 aa15.59■□□□□ 0.09
SHMT2-216ENST00000554975 USP6P35125 1406 aa15.59■□□□□ 0.09
SHMT2-216ENST00000554975 CPSF1Q10570 1443 aaKnown RBP15.59■□□□□ 0.09
SHMT2-216ENST00000554975 TRPM1Q7Z4N2 1603 aa15.58■□□□□ 0.09
SHMT2-216ENST00000554975 NLRP6P59044 892 aa15.58■□□□□ 0.08
SHMT2-216ENST00000554975 ZNF827Q17R98 1081 aa15.58■□□□□ 0.08
SHMT2-216ENST00000554975 CABP2Q9NPB3 220 aa15.57■□□□□ 0.08
SHMT2-216ENST00000554975 GPR162Q16538 588 aa15.56■□□□□ 0.08
SHMT2-216ENST00000554975 ACSBG1Q96GR2 724 aa15.56■□□□□ 0.08
SHMT2-216ENST00000554975 TNS2Q63HR2 1409 aa15.56■□□□□ 0.08
SHMT2-216ENST00000554975 SRPK2P78362 688 aaKnown RBP15.55■□□□□ 0.08
SHMT2-216ENST00000554975 BRD4O60885 1362 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-216ENST00000554975 CDCA7Q9BWT1 371 aaPredicted RBP15.54■□□□□ 0.08
SHMT2-216ENST00000554975 CARD10Q9BWT7 1032 aa15.54■□□□□ 0.08
SHMT2-216ENST00000554975 NFAT5O94916 1531 aa15.53■□□□□ 0.08
SHMT2-216ENST00000554975 ABCC6O95255 1503 aa15.53■□□□□ 0.08
SHMT2-216ENST00000554975 NBPF1Q3BBV0 1214 aa15.53■□□□□ 0.08
SHMT2-216ENST00000554975 ARHGEF25Q86VW2 580 aa15.53■□□□□ 0.08
SHMT2-216ENST00000554975 PELP1Q8IZL8 1130 aaKnown RBP15.53■□□□□ 0.08
SHMT2-216ENST00000554975 KLHL34Q8N239 644 aa15.53■□□□□ 0.08
SHMT2-216ENST00000554975 LRRC4BQ9NT99 713 aa15.53■□□□□ 0.08
SHMT2-216ENST00000554975 EXOC5O00471 708 aa15.52■□□□□ 0.08
SHMT2-216ENST00000554975 SOX12O15370 315 aa15.52■□□□□ 0.08
SHMT2-216ENST00000554975 NLGN2Q8NFZ4 835 aa15.52■□□□□ 0.08
SHMT2-216ENST00000554975 CABP1Q9NZU7 370 aa15.52■□□□□ 0.08
SHMT2-216ENST00000554975 CSB-PGBD3P0DP91 1061 aa15.51■□□□□ 0.07
SHMT2-216ENST00000554975 STAC3Q96MF2 364 aa15.51■□□□□ 0.07
SHMT2-216ENST00000554975 LTN1O94822 1766 aa15.5■□□□□ 0.07
SHMT2-216ENST00000554975 MIER1Q8N108 512 aa15.49■□□□□ 0.07
SHMT2-216ENST00000554975 CENPJQ9HC77 1338 aaPredicted RBP15.48■□□□□ 0.07
SHMT2-216ENST00000554975 YBX3P16989 372 aaKnown RBP eCLIP15.48■□□□□ 0.079e-9■□□□□ 9.1
SHMT2-216ENST00000554975 AKT1S1Q96B36 256 aa15.48■□□□□ 0.07
SHMT2-216ENST00000554975 CCDC7Q96M83 1385 aa15.48■□□□□ 0.07
SHMT2-216ENST00000554975 PNPLA7Q6ZV29 1317 aa15.47■□□□□ 0.07
SHMT2-216ENST00000554975 LY75O60449 1722 aa15.47■□□□□ 0.07
SHMT2-216ENST00000554975 TTC21BQ7Z4L5 1316 aa15.46■□□□□ 0.07
SHMT2-216ENST00000554975 NEUROD1Q13562 356 aa15.46■□□□□ 0.07
SHMT2-216ENST00000554975 MON2Q7Z3U7 1717 aa15.46■□□□□ 0.06
SHMT2-216ENST00000554975 ATP10DQ9P241 1426 aa15.45■□□□□ 0.06
SHMT2-216ENST00000554975 KCNQ4P56696 695 aa15.45■□□□□ 0.06
SHMT2-216ENST00000554975 SIN3AQ96ST3 1273 aa15.45■□□□□ 0.06
SHMT2-216ENST00000554975 DOT1LQ8TEK3 1739 aa15.45■□□□□ 0.06
SHMT2-216ENST00000554975 USP54Q70EL1 1684 aa15.44■□□□□ 0.06
SHMT2-216ENST00000554975 KCNH5Q8NCM2 988 aa15.43■□□□□ 0.06
SHMT2-216ENST00000554975 SLC16A10Q8TF71 515 aa15.43■□□□□ 0.06
SHMT2-216ENST00000554975 POLD1P28340 1107 aa15.42■□□□□ 0.06
SHMT2-216ENST00000554975 ERBB3P21860 1342 aa15.42■□□□□ 0.06
SHMT2-216ENST00000554975 RGPD2P0DJD1 1756 aa15.4■□□□□ 0.06
SHMT2-216ENST00000554975 IL2RBP14784 551 aa15.4■□□□□ 0.06
SHMT2-216ENST00000554975 NLRP2Q9NX02 1062 aa15.4■□□□□ 0.06
SHMT2-216ENST00000554975 ADCY9O60503 1353 aa15.38■□□□□ 0.05
SHMT2-216ENST00000554975 HSPA6P17066 643 aa15.38■□□□□ 0.05
SHMT2-216ENST00000554975 SLC27A3Q5K4L6 730 aa15.38■□□□□ 0.05
SHMT2-216ENST00000554975 TFCP2L1Q9NZI6 479 aa15.38■□□□□ 0.05
SHMT2-216ENST00000554975 TTC21AQ8NDW8 1320 aa15.38■□□□□ 0.05
SHMT2-216ENST00000554975 GRIN3BO60391 1043 aa15.37■□□□□ 0.05
SHMT2-216ENST00000554975 ZNF526Q8TF50 670 aaPredicted RBP15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms