RNA–Protein interactions for RNA: ENST00000554656.5

SHMT2-215, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 817 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-215ENST00000554656 AXIN2Q9Y2T1 843 aa15.13■□□□□ 0.01
SHMT2-215ENST00000554656 RGPD3A6NKT7 1758 aaPredicted RBP15.13■□□□□ 0.01
SHMT2-215ENST00000554656 RGPD4Q7Z3J3 1758 aa15.13■□□□□ 0.01
SHMT2-215ENST00000554656 PARD3Q8TEW0 1356 aa15.12■□□□□ 0.01
SHMT2-215ENST00000554656 APBA3O96018 575 aa15.12■□□□□ 0.01
SHMT2-215ENST00000554656 LTN1O94822 1766 aa15.11■□□□□ 0.01
SHMT2-215ENST00000554656 ARHGEF25Q86VW2 580 aa15.11■□□□□ 0.01
SHMT2-215ENST00000554656 OVOS2A0A0G2JMS6 1433 aa15.1■□□□□ 0.01
SHMT2-215ENST00000554656 OVOS2A0A0J9YW53 1432 aa15.1■□□□□ 0.01
SHMT2-215ENST00000554656 OVOS2Q6IE36 1432 aa15.1■□□□□ 0.01
SHMT2-215ENST00000554656 ABCC6O95255 1503 aa15.1■□□□□ 0.01
SHMT2-215ENST00000554656 WDR17Q8IZU2 1322 aa15.1■□□□□ 0.01
SHMT2-215ENST00000554656 TTC21AQ8NDW8 1320 aa15.1■□□□□ 0.01
SHMT2-215ENST00000554656 KTN1Q86UP2 1357 aaKnown RBP15.1■□□□□ 0.01
SHMT2-215ENST00000554656 ZNF692Q9BU19 519 aaPredicted RBP15.09■□□□□ 0.01
SHMT2-215ENST00000554656 SOX12O15370 315 aa15.08■□□□□ 0
SHMT2-215ENST00000554656 TOM1L2Q6ZVM7 507 aa15.08■□□□□ 0
SHMT2-215ENST00000554656 PTF1AQ7RTS3 328 aa15.07■□□□□ 0
SHMT2-215ENST00000554656 CARD11Q9BXL7 1154 aa15.06■□□□□ 0
SHMT2-215ENST00000554656 USP31Q70CQ4 1352 aa15.06■□□□□ 0
SHMT2-215ENST00000554656 DDB1Q16531 1140 aa15.05■□□□□ -0
SHMT2-215ENST00000554656 MARCH10Q8NA82 808 aaPredicted RBP15.05■□□□□ -0
SHMT2-215ENST00000554656 KCNH5Q8NCM2 988 aa15.05■□□□□ -0
SHMT2-215ENST00000554656 CASZ1Q86V15 1759 aa15.05■□□□□ -0
SHMT2-215ENST00000554656 BCL9O00512 1426 aa15.04■□□□□ -0
SHMT2-215ENST00000554656 NME9Q86XW9 330 aa15.04■□□□□ -0
SHMT2-215ENST00000554656 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.04■□□□□ -0
SHMT2-215ENST00000554656 CARD10Q9BWT7 1032 aa15.04■□□□□ -0
SHMT2-215ENST00000554656 TONSLQ96HA7 1378 aa15.03■□□□□ -0
SHMT2-215ENST00000554656 TNS2Q63HR2 1409 aa15.02■□□□□ -0
SHMT2-215ENST00000554656 EDC4Q6P2E9 1401 aaKnown RBP15.02■□□□□ -0
SHMT2-215ENST00000554656 A0A1W2PP64 1363 aa15.02■□□□□ -0
SHMT2-215ENST00000554656 SLC12A5Q9H2X9 1139 aa15.02■□□□□ -0
SHMT2-215ENST00000554656 NHSQ6T4R5 1651 aa15.02□□□□□ -0.01
SHMT2-215ENST00000554656 ZEB1P37275 1124 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-215ENST00000554656 ANO8Q9HCE9 1232 aaPredicted RBP15.01□□□□□ -0.01
SHMT2-215ENST00000554656 CCDC7Q96M83 1385 aa15□□□□□ -0.01
SHMT2-215ENST00000554656 ERBB3P21860 1342 aa15□□□□□ -0.01
SHMT2-215ENST00000554656 C11orf95C9JLR9 678 aaPredicted RBP15□□□□□ -0.01
SHMT2-215ENST00000554656 CSB-PGBD3P0DP91 1061 aa15□□□□□ -0.01
SHMT2-215ENST00000554656 CDCA7Q9BWT1 371 aaPredicted RBP15□□□□□ -0.01
SHMT2-215ENST00000554656 PLSCR1O15162 318 aa14.99□□□□□ -0.01
SHMT2-215ENST00000554656 TMC1Q8TDI8 760 aa14.99□□□□□ -0.01
SHMT2-215ENST00000554656 TESK2Q96S53 571 aa14.99□□□□□ -0.01
SHMT2-215ENST00000554656 BCL11BQ9C0K0 894 aaPredicted RBP14.99□□□□□ -0.01
SHMT2-215ENST00000554656 FAM208AQ9UK61 1670 aaKnown RBP14.98□□□□□ -0.01
SHMT2-215ENST00000554656 NBPF14Q5TI25 921 aa14.98□□□□□ -0.01
SHMT2-215ENST00000554656 PROM2Q8N271 834 aa14.98□□□□□ -0.01
SHMT2-215ENST00000554656 BTAF1O14981 1849 aa14.98□□□□□ -0.01
SHMT2-215ENST00000554656 RGPD2P0DJD1 1756 aa14.98□□□□□ -0.01
SHMT2-215ENST00000554656 HDGFL2Q7Z4V5 671 aaPredicted RBP14.97□□□□□ -0.01
SHMT2-215ENST00000554656 PAPPAQ13219 1627 aa14.96□□□□□ -0.01
SHMT2-215ENST00000554656 SHANK3Q9BYB0 1731 aa14.95□□□□□ -0.02
SHMT2-215ENST00000554656 ST20-MTHFSA0A0A6YYL1 179 aa14.95□□□□□ -0.02
SHMT2-215ENST00000554656 KCNQ2O43526 872 aa14.95□□□□□ -0.02
SHMT2-215ENST00000554656 PUS7Q96PZ0 661 aaKnown RBP14.95□□□□□ -0.02
SHMT2-215ENST00000554656 PDGFDQ9GZP0 370 aaPredicted RBP14.95□□□□□ -0.02
SHMT2-215ENST00000554656 CLSPNQ9HAW4 1339 aa14.94□□□□□ -0.02
SHMT2-215ENST00000554656 MYOM1P52179 1685 aa14.94□□□□□ -0.02
SHMT2-215ENST00000554656 EXOC5O00471 708 aa14.94□□□□□ -0.02
SHMT2-215ENST00000554656 ANKRD24Q8TF21 1146 aa14.94□□□□□ -0.02
SHMT2-215ENST00000554656 NLRP2Q9NX02 1062 aa14.94□□□□□ -0.02
SHMT2-215ENST00000554656 TERF2IPQ9NYB0 399 aa14.94□□□□□ -0.02
SHMT2-215ENST00000554656 KAT6BQ8WYB5 2073 aa14.93□□□□□ -0.02
SHMT2-215ENST00000554656 NINLQ9Y2I6 1382 aa14.93□□□□□ -0.02
SHMT2-215ENST00000554656 CCER1Q8TC90 406 aaPredicted RBP14.92□□□□□ -0.02
SHMT2-215ENST00000554656 SPON1Q9HCB6 807 aa14.92□□□□□ -0.02
SHMT2-215ENST00000554656 IL2RBP14784 551 aa14.91□□□□□ -0.02
SHMT2-215ENST00000554656 TXNRD1Q16881 649 aa14.91□□□□□ -0.02
SHMT2-215ENST00000554656 ACSBG1Q96GR2 724 aa14.91□□□□□ -0.02
SHMT2-215ENST00000554656 KIF20BQ96Q89 1820 aa14.91□□□□□ -0.02
SHMT2-215ENST00000554656 DOT1LQ8TEK3 1739 aa14.91□□□□□ -0.02
SHMT2-215ENST00000554656 ANKRD36BQ8N2N9 1353 aa14.9□□□□□ -0.02
SHMT2-215ENST00000554656 FBLN1P23142 703 aa14.9□□□□□ -0.02
SHMT2-215ENST00000554656 IP6K1Q92551 441 aa14.9□□□□□ -0.02
SHMT2-215ENST00000554656 MAP3K19Q56UN5 1328 aa14.9□□□□□ -0.02
SHMT2-215ENST00000554656 USP47Q96K76 1375 aa14.89□□□□□ -0.03
SHMT2-215ENST00000554656 TUBGCP6Q96RT7 1819 aa14.89□□□□□ -0.03
SHMT2-215ENST00000554656 MEGF6O75095 1541 aa14.87□□□□□ -0.03
SHMT2-215ENST00000554656 ZBTB7AO95365 584 aa14.87□□□□□ -0.03
SHMT2-215ENST00000554656 LTV1Q96GA3 475 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-215ENST00000554656 QSER1Q2KHR3 1735 aa14.86□□□□□ -0.03
SHMT2-215ENST00000554656 HOXC9P31274 260 aa14.86□□□□□ -0.03
SHMT2-215ENST00000554656 PTGER2P43116 358 aa14.86□□□□□ -0.03
SHMT2-215ENST00000554656 SLC15A2Q16348 729 aa14.86□□□□□ -0.03
SHMT2-215ENST00000554656 COG3Q96JB2 828 aa14.86□□□□□ -0.03
SHMT2-215ENST00000554656 PPP1R1BQ9UD71 204 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-215ENST00000554656 LY75O60449 1722 aa14.86□□□□□ -0.03
SHMT2-215ENST00000554656 STK32BQ9NY57 414 aa14.85□□□□□ -0.03
SHMT2-215ENST00000554656 LRRC4BQ9NT99 713 aa14.84□□□□□ -0.03
SHMT2-215ENST00000554656 RTL1A6NKG5 1358 aa14.84□□□□□ -0.03
SHMT2-215ENST00000554656 NSD2O96028 1365 aa14.84□□□□□ -0.03
SHMT2-215ENST00000554656 COL24A1Q17RW2 1714 aa14.83□□□□□ -0.03
SHMT2-215ENST00000554656 FYB1O15117 783 aa14.83□□□□□ -0.04
SHMT2-215ENST00000554656 RRS1Q15050 365 aaKnown RBP14.83□□□□□ -0.04
SHMT2-215ENST00000554656 ZNF827Q17R98 1081 aa14.83□□□□□ -0.04
SHMT2-215ENST00000554656 SGIP1Q9BQI5 828 aa14.83□□□□□ -0.04
SHMT2-215ENST00000554656 ATF5Q9Y2D1 282 aaPredicted RBP14.83□□□□□ -0.04
SHMT2-215ENST00000554656 DDX54Q8TDD1 881 aaKnown RBP14.82□□□□□ -0.04
SHMT2-215ENST00000554656 GGNBP2Q9H3C7 697 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms