RNA–Protein interactions for RNA: ENST00000554028.3

TMEM55B-205, humanhuman

TSL 2

Gene TMEM55B, Length 1,118 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM55B-205ENST00000554028 NEFMP07197 916 aa13.89□□□□□ -0.19
TMEM55B-205ENST00000554028 HNRNPUQ00839 825 aaKnown RBP eCLIP13.89□□□□□ -0.19
TMEM55B-205ENST00000554028 SMG6Q86US8 1419 aaKnown RBP13.89□□□□□ -0.19
TMEM55B-205ENST00000554028 CDK12Q9NYV4 1490 aaPredicted RBP13.88□□□□□ -0.19
TMEM55B-205ENST00000554028 TRPM3Q9HCF6 1732 aaPredicted RBP13.88□□□□□ -0.19
TMEM55B-205ENST00000554028 IP6K1Q92551 441 aa13.88□□□□□ -0.19
TMEM55B-205ENST00000554028 RTL1A6NKG5 1358 aa13.87□□□□□ -0.19
TMEM55B-205ENST00000554028 HOXC9P31274 260 aa13.87□□□□□ -0.19
TMEM55B-205ENST00000554028 ZC3H6P61129 1189 aaKnown RBP13.87□□□□□ -0.19
TMEM55B-205ENST00000554028 HSP90AB2PQ58FF8 381 aa13.87□□□□□ -0.19
TMEM55B-205ENST00000554028 ARHGEF25Q86VW2 580 aa13.87□□□□□ -0.19
TMEM55B-205ENST00000554028 CABLES1Q8TDN4 633 aa13.87□□□□□ -0.19
TMEM55B-205ENST00000554028 ROBO1Q9Y6N7 1651 aa13.87□□□□□ -0.19
TMEM55B-205ENST00000554028 USP54Q70EL1 1684 aa13.86□□□□□ -0.19
TMEM55B-205ENST00000554028 CENPBP07199 599 aaPredicted RBP13.86□□□□□ -0.19
TMEM55B-205ENST00000554028 IL13P35225 146 aa13.86□□□□□ -0.19
TMEM55B-205ENST00000554028 AHDC1Q5TGY3 1603 aaPredicted RBP13.86□□□□□ -0.19
TMEM55B-205ENST00000554028 SLIT3O75094 1523 aa13.85□□□□□ -0.19
TMEM55B-205ENST00000554028 NHSL1Q5SYE7 1610 aa13.85□□□□□ -0.19
TMEM55B-205ENST00000554028 FCHSD2O94868 740 aa13.84□□□□□ -0.19
TMEM55B-205ENST00000554028 EIF4A2Q14240 407 aaKnown RBP13.84□□□□□ -0.19
TMEM55B-205ENST00000554028 RUNDC1Q96C34 613 aa13.84□□□□□ -0.19
TMEM55B-205ENST00000554028 ALS2Q96Q42 1657 aa13.84□□□□□ -0.19
TMEM55B-205ENST00000554028 NGEFQ8N5V2 710 aa13.83□□□□□ -0.2
TMEM55B-205ENST00000554028 LTV1Q96GA3 475 aaPredicted RBP13.83□□□□□ -0.2
TMEM55B-205ENST00000554028 PRDM11Q9NQV5 511 aa13.83□□□□□ -0.2
TMEM55B-205ENST00000554028 MAPK8IP3Q9UPT6 1336 aa13.83□□□□□ -0.2
TMEM55B-205ENST00000554028 COL3A1P02461 1466 aaPredicted RBP13.82□□□□□ -0.2
TMEM55B-205ENST00000554028 NFAT5O94916 1531 aa13.82□□□□□ -0.2
TMEM55B-205ENST00000554028 CCDC146Q8IYE0 955 aa13.82□□□□□ -0.2
TMEM55B-205ENST00000554028 MAP2P11137 1827 aaKnown RBP13.82□□□□□ -0.2
TMEM55B-205ENST00000554028 CPDO75976 1380 aa13.82□□□□□ -0.2
TMEM55B-205ENST00000554028 MED1Q15648 1581 aaPredicted RBP13.81□□□□□ -0.2
TMEM55B-205ENST00000554028 BLMP54132 1417 aaPredicted RBP13.81□□□□□ -0.2
TMEM55B-205ENST00000554028 HMOX1P09601 288 aa13.8□□□□□ -0.2
TMEM55B-205ENST00000554028 CSB-PGBD3P0DP91 1061 aa13.8□□□□□ -0.2
TMEM55B-205ENST00000554028 SULT6B1Q6IMI4 303 aa13.8□□□□□ -0.2
TMEM55B-205ENST00000554028 ANKRD24Q8TF21 1146 aa13.8□□□□□ -0.2
TMEM55B-205ENST00000554028 KIAA0232Q92628 1395 aa13.8□□□□□ -0.2
TMEM55B-205ENST00000554028 APAF1O14727 1248 aa13.79□□□□□ -0.2
TMEM55B-205ENST00000554028 CHRNA2Q15822 529 aa13.79□□□□□ -0.2
TMEM55B-205ENST00000554028 ZBED9Q6R2W3 1325 aa13.79□□□□□ -0.2
TMEM55B-205ENST00000554028 PHLPP1O60346 1717 aa13.78□□□□□ -0.2
TMEM55B-205ENST00000554028 PRKAR2BP31323 418 aa13.78□□□□□ -0.2
TMEM55B-205ENST00000554028 EVA1CP58658 441 aa13.78□□□□□ -0.2
TMEM55B-205ENST00000554028 EYA1Q99502 592 aa13.78□□□□□ -0.2
TMEM55B-205ENST00000554028 SALL2Q9Y467 1007 aaPredicted RBP13.78□□□□□ -0.2
TMEM55B-205ENST00000554028 JCADQ9P266 1359 aa13.78□□□□□ -0.2
TMEM55B-205ENST00000554028 MARF1Q9Y4F3 1742 aaKnown RBP13.78□□□□□ -0.2
TMEM55B-205ENST00000554028 TCP11L2Q8N4U5 519 aa13.77□□□□□ -0.21
TMEM55B-205ENST00000554028 RSPH6AQ9H0K4 717 aa13.77□□□□□ -0.21
TMEM55B-205ENST00000554028 AXIN2Q9Y2T1 843 aa13.77□□□□□ -0.21
TMEM55B-205ENST00000554028 IGSF1Q8N6C5 1336 aa13.76□□□□□ -0.21
TMEM55B-205ENST00000554028 NUTM2BA6NNL0 878 aaPredicted RBP13.76□□□□□ -0.21
TMEM55B-205ENST00000554028 NUTM2EB1AL46 878 aaPredicted RBP13.76□□□□□ -0.21
TMEM55B-205ENST00000554028 NUTM2AQ8IVF1 878 aaPredicted RBP13.76□□□□□ -0.21
TMEM55B-205ENST00000554028 PLEKHF1Q96S99 279 aa13.76□□□□□ -0.21
TMEM55B-205ENST00000554028 PEAK1Q9H792 1746 aa13.76□□□□□ -0.21
TMEM55B-205ENST00000554028 PHRF1Q9P1Y6 1649 aaKnown RBP13.75□□□□□ -0.21
TMEM55B-205ENST00000554028 PDE3BQ13370 1112 aa13.75□□□□□ -0.21
TMEM55B-205ENST00000554028 NLRP2Q9NX02 1062 aa13.75□□□□□ -0.21
TMEM55B-205ENST00000554028 SHPRHQ149N8 1683 aa13.75□□□□□ -0.21
TMEM55B-205ENST00000554028 COL16A1Q07092 1604 aaPredicted RBP13.75□□□□□ -0.21
TMEM55B-205ENST00000554028 ABCC6O95255 1503 aa13.74□□□□□ -0.21
TMEM55B-205ENST00000554028 ERBB3P21860 1342 aa13.74□□□□□ -0.21
TMEM55B-205ENST00000554028 SPATA31A6Q5VVP1 1343 aa13.74□□□□□ -0.21
TMEM55B-205ENST00000554028 FAM83GA6ND36 823 aa13.74□□□□□ -0.21
TMEM55B-205ENST00000554028 ADAMTS2O95450 1211 aa13.74□□□□□ -0.21
TMEM55B-205ENST00000554028 NEUROD2Q15784 382 aa13.74□□□□□ -0.21
TMEM55B-205ENST00000554028 NBPF6Q5VWK0 638 aa13.74□□□□□ -0.21
TMEM55B-205ENST00000554028 NBPF4Q96M43 638 aa13.74□□□□□ -0.21
TMEM55B-205ENST00000554028 SENP3-EIF4A1A0A087X0R7 540 aa13.73□□□□□ -0.21
TMEM55B-205ENST00000554028 HSPA1LP34931 641 aa13.73□□□□□ -0.21
TMEM55B-205ENST00000554028 TMPOP42166 694 aaKnown RBP13.73□□□□□ -0.21
TMEM55B-205ENST00000554028 LMOD3Q0VAK6 560 aa13.73□□□□□ -0.21
TMEM55B-205ENST00000554028 AEBP1Q8IUX7 1158 aa13.73□□□□□ -0.21
TMEM55B-205ENST00000554028 LTN1O94822 1766 aa13.73□□□□□ -0.21
TMEM55B-205ENST00000554028 RIPK4P57078 832 aa13.72□□□□□ -0.21
TMEM55B-205ENST00000554028 NFE2L2Q16236 605 aa13.72□□□□□ -0.21
TMEM55B-205ENST00000554028 CCDC27Q2M243 656 aa13.72□□□□□ -0.21
TMEM55B-205ENST00000554028 TOM1L2Q6ZVM7 507 aa13.72□□□□□ -0.21
TMEM55B-205ENST00000554028 RAPGEF4Q8WZA2 1011 aa13.72□□□□□ -0.21
TMEM55B-205ENST00000554028 STRN4Q9NRL3 753 aa13.72□□□□□ -0.21
TMEM55B-205ENST00000554028 RRP7AQ9Y3A4 280 aaKnown RBP13.72□□□□□ -0.21
TMEM55B-205ENST00000554028 COL22A1Q8NFW1 1626 aaPredicted RBP13.72□□□□□ -0.21
TMEM55B-205ENST00000554028 KDRP35968 1356 aa13.71□□□□□ -0.21
TMEM55B-205ENST00000554028 WDR17Q8IZU2 1322 aa13.71□□□□□ -0.21
TMEM55B-205ENST00000554028 USHBP1Q8N6Y0 703 aa13.71□□□□□ -0.21
TMEM55B-205ENST00000554028 GAS2L2Q8NHY3 880 aa13.71□□□□□ -0.21
TMEM55B-205ENST00000554028 BTG4Q9NY30 223 aa13.71□□□□□ -0.21
TMEM55B-205ENST00000554028 CALD1Q05682 793 aaKnown RBP13.7□□□□□ -0.22
TMEM55B-205ENST00000554028 GOLGA2Q08379 1002 aa13.7□□□□□ -0.22
TMEM55B-205ENST00000554028 AMOTQ4VCS5 1084 aa13.7□□□□□ -0.22
TMEM55B-205ENST00000554028 PLEKHO1Q53GL0 409 aaPredicted RBP13.7□□□□□ -0.22
TMEM55B-205ENST00000554028 PHACTR3Q96KR7 559 aa13.7□□□□□ -0.22
TMEM55B-205ENST00000554028 TATP17735 454 aaPredicted RBP13.69□□□□□ -0.22
TMEM55B-205ENST00000554028 MEX3CQ5U5Q3 659 aaKnown RBP13.69□□□□□ -0.22
TMEM55B-205ENST00000554028 WDR63Q8IWG1 891 aa13.69□□□□□ -0.22
TMEM55B-205ENST00000554028 WWC1Q8IX03 1113 aa13.69□□□□□ -0.22
TMEM55B-205ENST00000554028 RTF1Q92541 710 aaKnown RBP13.69□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms