RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 POLR3GLQ9BT43 218 aa21.23■□□□□ 0.99
SHMT2-204ENST00000553324 COL5A2P05997 1499 aaPredicted RBP21.23■□□□□ 0.99
SHMT2-204ENST00000553324 CRB1P82279 1406 aa21.22■□□□□ 0.99
SHMT2-204ENST00000553324 CSB-PGBD3P0DP91 1061 aa21.22■□□□□ 0.99
SHMT2-204ENST00000553324 WDR17Q8IZU2 1322 aa21.22■□□□□ 0.99
SHMT2-204ENST00000553324 LMO7Q8WWI1 1683 aa21.21■□□□□ 0.99
SHMT2-204ENST00000553324 OVOS2A0A0J9YW53 1432 aa21.21■□□□□ 0.99
SHMT2-204ENST00000553324 OVOS2Q6IE36 1432 aa21.21■□□□□ 0.99
SHMT2-204ENST00000553324 NFAT5O94916 1531 aa21.2■□□□□ 0.98
SHMT2-204ENST00000553324 PDE3BQ13370 1112 aa21.19■□□□□ 0.98
SHMT2-204ENST00000553324 CDCA7Q9BWT1 371 aaPredicted RBP21.19■□□□□ 0.98
SHMT2-204ENST00000553324 CARD10Q9BWT7 1032 aa21.19■□□□□ 0.98
SHMT2-204ENST00000553324 CARD14Q9BXL6 1004 aa21.19■□□□□ 0.98
SHMT2-204ENST00000553324 SF3B2Q13435 895 aaKnown RBP21.18■□□□□ 0.98
SHMT2-204ENST00000553324 GGNBP2Q9H3C7 697 aa21.18■□□□□ 0.98
SHMT2-204ENST00000553324 EP400Q96L91 3159 aa21.18■□□□□ 0.98
SHMT2-204ENST00000553324 IP6K1Q92551 441 aa21.17■□□□□ 0.98
SHMT2-204ENST00000553324 ABCC6O95255 1503 aa21.17■□□□□ 0.98
SHMT2-204ENST00000553324 USP54Q70EL1 1684 aa21.16■□□□□ 0.98
SHMT2-204ENST00000553324 CGNL1Q0VF96 1302 aa21.16■□□□□ 0.98
SHMT2-204ENST00000553324 C11orf95C9JLR9 678 aaPredicted RBP21.16■□□□□ 0.98
SHMT2-204ENST00000553324 AMPHP49418 695 aa21.15■□□□□ 0.98
SHMT2-204ENST00000553324 FAM196AQ6ZSG2 479 aa21.15■□□□□ 0.98
SHMT2-204ENST00000553324 BLMP54132 1417 aaPredicted RBP21.14■□□□□ 0.98
SHMT2-204ENST00000553324 ERBB3P21860 1342 aa21.14■□□□□ 0.97
SHMT2-204ENST00000553324 COL18A1P39060 1754 aa21.14■□□□□ 0.97
SHMT2-204ENST00000553324 NSD3Q9BZ95 1437 aa21.13■□□□□ 0.97
SHMT2-204ENST00000553324 ANKRD24Q8TF21 1146 aa21.13■□□□□ 0.97
SHMT2-204ENST00000553324 CCDC7Q96M83 1385 aa21.12■□□□□ 0.97
SHMT2-204ENST00000553324 MAP3K19Q56UN5 1328 aa21.12■□□□□ 0.97
SHMT2-204ENST00000553324 PANK3Q9H999 370 aa21.12■□□□□ 0.97
SHMT2-204ENST00000553324 DDB1Q16531 1140 aa21.11■□□□□ 0.97
SHMT2-204ENST00000553324 NLRP2Q9NX02 1062 aa21.11■□□□□ 0.97
SHMT2-204ENST00000553324 THSD7AQ9UPZ6 1657 aa21.11■□□□□ 0.97
SHMT2-204ENST00000553324 HOXC9P31274 260 aa21.1■□□□□ 0.97
SHMT2-204ENST00000553324 BRWD3Q6RI45 1802 aa21.09■□□□□ 0.97
SHMT2-204ENST00000553324 FBLN1P23142 703 aa21.09■□□□□ 0.97
SHMT2-204ENST00000553324 EXOC5O00471 708 aa21.08■□□□□ 0.97
SHMT2-204ENST00000553324 RRS1Q15050 365 aaKnown RBP21.08■□□□□ 0.97
SHMT2-204ENST00000553324 FAM182BQ5T319 152 aa21.08■□□□□ 0.97
SHMT2-204ENST00000553324 RTL1A6NKG5 1358 aa21.07■□□□□ 0.96
SHMT2-204ENST00000553324 KIF24Q5T7B8 1368 aa21.07■□□□□ 0.96
SHMT2-204ENST00000553324 BAG6P46379 1132 aa21.06■□□□□ 0.96
SHMT2-204ENST00000553324 KIF7Q2M1P5 1343 aa21.05■□□□□ 0.96
SHMT2-204ENST00000553324 LTV1Q96GA3 475 aaPredicted RBP21.05■□□□□ 0.96
SHMT2-204ENST00000553324 KNSTRNQ9Y448 316 aa21.05■□□□□ 0.96
SHMT2-204ENST00000553324 MYOM1P52179 1685 aa21.05■□□□□ 0.96
SHMT2-204ENST00000553324 IL2RBP14784 551 aa21.04■□□□□ 0.96
SHMT2-204ENST00000553324 TRIM37O94972 964 aa21.02■□□□□ 0.96
SHMT2-204ENST00000553324 NSD2O96028 1365 aa21.01■□□□□ 0.95
SHMT2-204ENST00000553324 FLT4P35916 1363 aa21.01■□□□□ 0.95
SHMT2-204ENST00000553324 LTN1O94822 1766 aa21.01■□□□□ 0.95
SHMT2-204ENST00000553324 DEFB132Q7Z7B7 95 aa21.01■□□□□ 0.95
SHMT2-204ENST00000553324 DISP2A7MBM2 1401 aa21.01■□□□□ 0.95
SHMT2-204ENST00000553324 INSRP06213 1382 aa21■□□□□ 0.95
SHMT2-204ENST00000553324 HSP90AB2PQ58FF8 381 aa21■□□□□ 0.95
SHMT2-204ENST00000553324 SMG6Q86US8 1419 aaKnown RBP21■□□□□ 0.95
SHMT2-204ENST00000553324 RGPD5Q99666 1765 aa21■□□□□ 0.95
SHMT2-204ENST00000553324 OVOS2A0A0G2JMS6 1433 aa20.99■□□□□ 0.95
SHMT2-204ENST00000553324 PARP4Q9UKK3 1724 aaKnown RBP20.98■□□□□ 0.95
SHMT2-204ENST00000553324 PPM1GO15355 546 aaPredicted RBP20.98■□□□□ 0.95
SHMT2-204ENST00000553324 APBA3O96018 575 aa20.98■□□□□ 0.95
SHMT2-204ENST00000553324 MARCH10Q8NA82 808 aaPredicted RBP20.98■□□□□ 0.95
SHMT2-204ENST00000553324 MORC1Q86VD1 984 aa20.97■□□□□ 0.95
SHMT2-204ENST00000553324 POLKQ9UBT6 870 aa20.97■□□□□ 0.95
SHMT2-204ENST00000553324 EMILIN1Q9Y6C2 1016 aa20.97■□□□□ 0.95
SHMT2-204ENST00000553324 WASHC2AQ641Q2 1341 aa20.97■□□□□ 0.95
SHMT2-204ENST00000553324 KIF20BQ96Q89 1820 aa20.97■□□□□ 0.95
SHMT2-204ENST00000553324 BCL9O00512 1426 aa20.95■□□□□ 0.95
SHMT2-204ENST00000553324 TNNT2P45379 298 aaPredicted RBP20.95■□□□□ 0.94
SHMT2-204ENST00000553324 EN1Q05925 392 aaPredicted RBP20.95■□□□□ 0.94
SHMT2-204ENST00000553324 NBPF6Q5VWK0 638 aa20.95■□□□□ 0.94
SHMT2-204ENST00000553324 NBPF4Q96M43 638 aa20.95■□□□□ 0.94
SHMT2-204ENST00000553324 BCL11BQ9C0K0 894 aaPredicted RBP20.94■□□□□ 0.94
SHMT2-204ENST00000553324 AMER1Q5JTC6 1135 aaPredicted RBP20.93■□□□□ 0.94
SHMT2-204ENST00000553324 RAPGEF4Q8WZA2 1011 aa20.93■□□□□ 0.94
SHMT2-204ENST00000553324 TNS2Q63HR2 1409 aa20.93■□□□□ 0.94
SHMT2-204ENST00000553324 PER1O15534 1290 aaPredicted RBP20.92■□□□□ 0.94
SHMT2-204ENST00000553324 PARD3Q8TEW0 1356 aa20.92■□□□□ 0.94
SHMT2-204ENST00000553324 ZCRB1Q8TBF4 217 aaKnown RBP20.91■□□□□ 0.94
SHMT2-204ENST00000553324 CAMKK2Q96RR4 588 aa20.91■□□□□ 0.94
SHMT2-204ENST00000553324 LRRC37A3O60309 1634 aa20.9■□□□□ 0.94
SHMT2-204ENST00000553324 TATP17735 454 aaPredicted RBP20.9■□□□□ 0.94
SHMT2-204ENST00000553324 RGPD1P0DJD0 1748 aa20.9■□□□□ 0.94
SHMT2-204ENST00000553324 FAM208AQ9UK61 1670 aaKnown RBP20.89■□□□□ 0.94
SHMT2-204ENST00000553324 PLSCR1O15162 318 aa20.89■□□□□ 0.93
SHMT2-204ENST00000553324 EZH2Q15910 746 aaKnown RBP20.89■□□□□ 0.93
SHMT2-204ENST00000553324 DDX54Q8TDD1 881 aaKnown RBP20.89■□□□□ 0.93
SHMT2-204ENST00000553324 USHBP1Q8N6Y0 703 aa20.87■□□□□ 0.93
SHMT2-204ENST00000553324 EYA1Q99502 592 aa20.85■□□□□ 0.93
SHMT2-204ENST00000553324 WNK3Q9BYP7 1800 aa20.85■□□□□ 0.93
SHMT2-204ENST00000553324 NPC1L1Q9UHC9 1359 aa20.85■□□□□ 0.93
SHMT2-204ENST00000553324 EIF4A2Q14240 407 aaKnown RBP20.84■□□□□ 0.93
SHMT2-204ENST00000553324 PEAK1Q9H792 1746 aa20.84■□□□□ 0.93
SHMT2-204ENST00000553324 NBPF14Q5TI25 921 aa20.83■□□□□ 0.93
SHMT2-204ENST00000553324 CC2D1BQ5T0F9 858 aaKnown RBP20.82■□□□□ 0.92
SHMT2-204ENST00000553324 ACSBG1Q96GR2 724 aa20.82■□□□□ 0.92
SHMT2-204ENST00000553324 ANKRD26Q9UPS8 1709 aa20.81■□□□□ 0.92
SHMT2-204ENST00000553324 MAP2P11137 1827 aaKnown RBP20.81■□□□□ 0.92
SHMT2-204ENST00000553324 KCNQ2O43526 872 aa20.81■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms